Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Forward (+)

20961855 .. 20966299

Gene Structure 4445 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1101500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCAAGCTTTGCAAGCACCACGCAAAAGTGTACAGCCTGCGAAAAGACTGTGTATCTGGTTGATCGGTTGGCCGCCGATTCCAGAATTTACCACAAGGCCTGCTTCCGATGCCACCACTGCAAGAGTACCCTCAAGCTCATCAACTATTGTTCATTTGAGGGGGTTCTCTACTGCAGGCCTCACTATGATCAACTCTTCAAGCGAACTGGCAGCCTGGACAAGAGTTTTGAAGGAACACCAAAAGTCGTAAAGCCAGCAAGACCTTCTACGGAAAATGAGAATGCCAAGTCAGTCTCAAACTTGTTTGCCGGTACCAGAGATAAATGTGTGGGCTGTGAGAAAACTGTTTATCCAATTGAGAAGGTTTCCGTCAACGGGACTCCATACCACAAGAGTTGCTTCAAATGCAGCCATGGAGGTTGCACCATAAGCCCATCCAATTACATTGCACATGAAGGAAAGCTCTACTGCAAACACCACCACATCCAACTCTTCAAGGAGAAAGGAAATTACAGCCAGCTCGAGAACGAACACGAAAAGCTTACAATGACTGAGCAAGCCACTCATATGGAGATTGCTGCTGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

198

Amino Acids

22.24

Weight (kDa)

8.73

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	11 - 66	5.6e-09	LIM domain
LIM	PF00412	110 - 166	3e-12	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	314
AciI	CCGC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	87
AfaI	GTAC	3 cut(s)	34, 130, 316
AfiI	CCNNNNNNNGG	1 cut(s)	378
AgsI	TTSAA	4 cut(s)	202, 233, 406, 499
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	5 cut(s)	9, 139, 466, 523, 544
AluI	AGCT	5 cut(s)	9, 139, 466, 523, 544
Alw26I	GTCTC	1 cut(s)	301
Ama87I	CYCGRG	1 cut(s)	524
AoxI	GGCC	3 cut(s)	72, 99, 179
ApeKI	GCWGC	3 cut(s)	213, 411, 581
ApoI	RAATTY	1 cut(s)	87
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
Asp718I	GGTACC	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	314
BbvI	GCAGC	3 cut(s)	225, 423, 568
BccI	CCATC	1 cut(s)	445
BciT130I	CCWGG	1 cut(s)	218
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	301
BfmI	CTRYAG	1 cut(s)	175
BisI	GCNGC	4 cut(s)	75, 214, 412, 582
BlsI	GCNGC	4 cut(s)	76, 215, 413, 583
Bme1390I	CCNGG	1 cut(s)	218
BmeT110I	CYCGRG	1 cut(s)	524
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	415
BseGI	GGATG	2 cut(s)	437, 486
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	1 cut(s)	214
BseXI	GCAGC	3 cut(s)	225, 423, 568
BshFI	GGCC	3 cut(s)	74, 101, 181
BshNI	GGYRCC	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	524
BsiSI	CCGG	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	378
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	394
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	3 cut(s)	74, 101, 181
BsoBI	CYCGRG	1 cut(s)	524
Bsp1407I	TGTACA	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	64, 190
Bsp19I	CCATGG	1 cut(s)	415
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	3 cut(s)	74, 101, 181
BspCNI	CTCAG	1 cut(s)	547
BspHI	TCATGA	1 cut(s)	590
BspLI	GGNNCC	1 cut(s)	316
BspMAI	CTGCAG	1 cut(s)	179
BspT107I	GGYRCC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	311
BsrGI	TGTACA	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	415
BssMI	GATC	2 cut(s)	64, 190
BssT1I	CCWWGG	1 cut(s)	415
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	52, 349
Bst6I	CTCTTC	2 cut(s)	203, 500
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	32
BstC8I	GCNNGC	8 cut(s)	7, 16, 40, 103, 179, 258, 521, 561
BstDEI	CTNAG	1 cut(s)	555
BstDSI	CCRYGG	1 cut(s)	415
BstF5I	GGATG	2 cut(s)	437, 486
BstKTI	GATC	2 cut(s)	67, 193
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	2 cut(s)	64, 190
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 15, 111, 120, 408, 432
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	1 cut(s)	175
BstV1I	GCAGC	3 cut(s)	225, 423, 568
BstXI	CCANNNNNNTGG	1 cut(s)	571
BsuRI	GGCC	3 cut(s)	74, 101, 181
BtgI	CCRYGG	1 cut(s)	415
BtsCI	GGATG	2 cut(s)	437, 486
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	8 cut(s)	7, 16, 40, 103, 179, 258, 521, 561
CciI	TCATGA	1 cut(s)	590
Cfr10I	RCCGGY	1 cut(s)	311
Csp6I	GTAC	3 cut(s)	33, 129, 315
CspCI	CAANNNNNGTGG	2 cut(s)	380, 415
CviAII	CATG	3 cut(s)	416, 455, 591
CviQI	GTAC	3 cut(s)	33, 129, 315
DdeI	CTNAG	1 cut(s)	555
DpnI	GATC	2 cut(s)	66, 192
DpnII	GATC	2 cut(s)	64, 190
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	2 cut(s)	203, 500
EarI	CTCTTC	2 cut(s)	203, 500
Eco130I	CCWWGG	1 cut(s)	415
Eco147I	AGGCCT	2 cut(s)	101, 181
Eco88I	CYCGRG	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	3 cut(s)	419, 458, 594
FaiI	YATR	8 cut(s)	189, 388, 417, 431, 456, 570, 572, 592
FalI	AAGNNNNNCTT	4 cut(s)	89, 121, 386, 418
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	3 cut(s)	415, 454, 590
FauNDI	CATATG	1 cut(s)	570
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	4 cut(s)	75, 214, 412, 582
FokI	GGATG	2 cut(s)	424, 473
Fsp4HI	GCNGC	4 cut(s)	75, 214, 412, 582
GluI	GCNGC	4 cut(s)	75, 214, 412, 582
HaeIII	GGCC	3 cut(s)	74, 101, 181
HapII	CCGG	1 cut(s)	312
Hin1II	CATG	3 cut(s)	419, 458, 594
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HindIII	AAGCTT	2 cut(s)	7, 542
HinfI	GANTC	3 cut(s)	80, 382, 587
HpaII	CCGG	1 cut(s)	312
Hpy166II	GTNNAC	2 cut(s)	33, 376
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	3 cut(s)	84, 526, 591
Hpy8I	GTNNAC	2 cut(s)	33, 376
HpyAV	CCTTC	4 cut(s)	227, 276, 358, 452
HpyCH4III	ACNGT	2 cut(s)	52, 349
HpyCH4V	TGCA	7 cut(s)	14, 123, 177, 411, 426, 452, 474
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 15, 111, 120, 408, 432
HpyF3I	CTNAG	1 cut(s)	555
Hsp92II	CATG	3 cut(s)	419, 458, 594
KpnI	GGTACC	1 cut(s)	318
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	64, 190
Lsp1109I	GCAGC	3 cut(s)	225, 423, 568
LweI	GCATC	1 cut(s)	101
MalI	GATC	2 cut(s)	66, 192
MboI	GATC	2 cut(s)	64, 190
MboII	GAAGA	2 cut(s)	190, 487
MfeI	CAATTG	1 cut(s)	357
MluCI	AATT	4 cut(s)	87, 357, 442, 511
MlyI	GAGTC	1 cut(s)	376
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	4 cut(s)	143, 154, 192, 413
MslI	CAYNNNNRTG	1 cut(s)	569
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	218
MunI	CAATTG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	6 cut(s)	11, 15, 111, 120, 408, 432
NcoI	CCATGG	1 cut(s)	415
NdeI	CATATG	1 cut(s)	570
NdeII	GATC	2 cut(s)	64, 190
NlaIII	CATG	3 cut(s)	419, 458, 594
NlaIV	GGNNCC	1 cut(s)	316
PaeR7I	CTCGAG	1 cut(s)	524
PagI	TCATGA	1 cut(s)	590
PceI	AGGCCT	2 cut(s)	101, 181
PctI	GAATGC	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	80, 587
PkrI	GCNGC	4 cut(s)	76, 215, 413, 583
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	316
PstI	CTGCAG	1 cut(s)	179
RsaI	GTAC	3 cut(s)	34, 130, 316
RsaNI	GTAC	3 cut(s)	33, 129, 315
RseI	CAYNNNNRTG	1 cut(s)	569
SatI	GCNGC	4 cut(s)	75, 214, 412, 582
Sau3AI	GATC	2 cut(s)	64, 190
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	218
SetI	ASST	8 cut(s)	11, 141, 268, 369, 424, 468, 525, 546
SfaNI	GCATC	1 cut(s)	101
SfcI	CTRYAG	1 cut(s)	175
Sfr274I	CTCGAG	1 cut(s)	524
SlaI	CTCGAG	1 cut(s)	524
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	2 cut(s)	134, 524
SmoI	CTYRAG	2 cut(s)	134, 524
Sse9I	AATT	4 cut(s)	87, 357, 442, 511
SseBI	AGGCCT	2 cut(s)	101, 181
SsiI	CCGC	1 cut(s)	75
StuI	AGGCCT	2 cut(s)	101, 181
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	2 cut(s)	52, 349
TaqI	TCGA	1 cut(s)	525
TasI	AATT	4 cut(s)	87, 357, 442, 511
TatI	WGTACW	1 cut(s)	32
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	80, 587
TscAI	CASTG	1 cut(s)	125
TseI	GCWGC	3 cut(s)	213, 411, 581
TspDTI	ATGAA	2 cut(s)	144, 471
TspGWI	ACGGA	2 cut(s)	287, 361
TspRI	CASTG	1 cut(s)	125
XapI	RAATTY	1 cut(s)	87
XhoI	CTCGAG	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.