Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Reverse (-)

27756305 .. 27758698

Gene Structure 2394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1185200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCAACGTTTGGAGGGACAACCCAGAAGTGCAAAGCATGTGAGAAGACAGTATACTTGGTTGATCAGCTCACTGCTGACAACAAAGTCTACCACAAGGCTTGCTTCAGATGCCACCACTGCAAGGGCACCCTCAAGCTTAGTAATTACTCCTCTTTTGAGGGTGTTTTGTATTGCAAGCCTCACTTTGATCAGCTGTTTAAGATGACTGGGAGCTTGGATAAAAGTTTTGAAGGTATACCAAAAACTGTTCGAGAAAGATCCGATCAGACCAACAGTAAAGTTTCGAGCTTATTTGCTGGGACTCAAGACAAGTGTGTTGCTTGCAAGAAAACAGTTTACCCCATCGAAAAGGTGGCAGTTGACGGCACATCATACCATAAGCCTTGTTTCCGGTGCACTCATGGAGGCTGTGTGATCAGTCCATCAAACTATGTAGCTCACGAGCATCGTCTATACTGTAGGCATCACCATAGCCAACTCTTCAAGGAGAAGGGAAACTTCAGCCAGCTTAGCAAGCACGAAGAAGTTAAAGAGGTGACTGAGAACACAGACGGAGAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

189

Amino Acids

21.25

Weight (kDa)

8.77

Isoelectric Point (pI)

27.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	11 - 66	4.5e-11	LIM domain
LIM	PF00412	106 - 162	2.6e-10	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	128
AccI	GTMKAC	3 cut(s)	54, 90, 238
AclI	AACGTT	1 cut(s)	8
AclWI	GGATC	1 cut(s)	255
AcuI	CTGAAG	2 cut(s)	91, 487
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	2 cut(s)	233, 487
AluBI	AGCT	7 cut(s)	70, 139, 196, 216, 291, 440, 511
AluI	AGCT	7 cut(s)	70, 139, 196, 216, 291, 440, 511
Alw21I	GWGCWC	1 cut(s)	401
Alw44I	GTGCAC	1 cut(s)	397
AlwI	GGATC	1 cut(s)	255
ApaLI	GTGCAC	1 cut(s)	397
AsuHPI	GGTGA	2 cut(s)	461, 550
BaeGI	GKGCMC	2 cut(s)	131, 401
BanI	GGYRCC	1 cut(s)	128
BarI	GAAGNNNNNNTAC	2 cut(s)	38, 70
BauI	CACGAG	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	401
BccI	CCATC	2 cut(s)	353, 433
BceAI	ACGGC	1 cut(s)	382
BclI	TGATCA	3 cut(s)	64, 190, 417
BfmI	CTRYAG	1 cut(s)	460
BlpI	GCTNAGC	1 cut(s)	512
BmiI	GGNNCC	1 cut(s)	130
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	3 cut(s)	101, 457, 475
BmuI	ACTGGG	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	53
Bpu1102I	GCTNAGC	1 cut(s)	512
BpuEI	CTTGAG	2 cut(s)	119, 291
BsaWI	WCCGGW	1 cut(s)	393
BsaXI	ACNNNNNCTCC	2 cut(s)	399, 429
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	142
BseSI	GKGCMC	2 cut(s)	131, 401
BseYI	CCCAGC	1 cut(s)	299
BshNI	GGYRCC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	394
BslFI	GGGAC	2 cut(s)	31, 316
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmFI	GGGAC	2 cut(s)	31, 316
Bsp1286I	GDGCHC	2 cut(s)	131, 401
Bsp143I	GATC	5 cut(s)	64, 190, 260, 265, 417
Bsp1720I	GCTNAGC	1 cut(s)	512
BspCNI	CTCAG	1 cut(s)	535
BspLI	GGNNCC	1 cut(s)	130
BspPI	GGATC	1 cut(s)	255
BspT107I	GGYRCC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	214
BssMI	GATC	5 cut(s)	64, 190, 260, 265, 417
BssNAI	GTATAC	2 cut(s)	55, 239
BssSI	CACGAG	1 cut(s)	443
Bst1107I	GTATAC	2 cut(s)	55, 239
Bst2BI	CACGAG	1 cut(s)	443
Bst4CI	ACNGT	5 cut(s)	52, 250, 278, 337, 461
Bst6I	CTCTTC	1 cut(s)	488
BstC8I	GCNNGC	5 cut(s)	103, 179, 325, 509, 518
BstDEI	CTNAG	3 cut(s)	140, 512, 543
BstKTI	GATC	5 cut(s)	67, 193, 263, 268, 420
BstMBI	GATC	5 cut(s)	64, 190, 260, 265, 417
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 120, 513, 517
BstNSI	RCATGY	1 cut(s)	42
BstSFI	CTRYAG	1 cut(s)	460
BstSLI	GKGCMC	2 cut(s)	131, 401
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BstZ17I	GTATAC	2 cut(s)	55, 239
BtsI	GCAGTG	2 cut(s)	72, 118
BtsIMutI	CAGTG	2 cut(s)	72, 118
Cac8I	GCNNGC	5 cut(s)	103, 179, 325, 509, 518
CspCI	CAANNNNNGTGG	2 cut(s)	83, 118
CviAII	CATG	2 cut(s)	39, 404
DdeI	CTNAG	3 cut(s)	140, 512, 543
DpnI	GATC	5 cut(s)	66, 192, 262, 267, 419
DpnII	GATC	5 cut(s)	64, 190, 260, 265, 417
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
Eam1104I	CTCTTC	1 cut(s)	488
EarI	CTCTTC	1 cut(s)	488
Eco57I	CTGAAG	2 cut(s)	91, 487
FaeI	CATG	2 cut(s)	42, 407
FaiI	YATR	9 cut(s)	40, 55, 239, 376, 381, 405, 435, 457, 474
FalI	AAGNNNNNCTT	6 cut(s)	89, 121, 170, 202, 485, 517
FaqI	GGGAC	2 cut(s)	31, 316
FatI	CATG	2 cut(s)	38, 403
FbaI	TGATCA	3 cut(s)	64, 190, 417
FblI	GTMKAC	3 cut(s)	54, 90, 238
GsaI	CCCAGC	1 cut(s)	303
HapII	CCGG	1 cut(s)	394
Hin1II	CATG	2 cut(s)	42, 407
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	1 cut(s)	304
HpaII	CCGG	1 cut(s)	394
HphI	GGTGA	2 cut(s)	461, 550
Hpy166II	GTNNAC	6 cut(s)	55, 91, 239, 340, 364, 399
Hpy188I	TCNGA	3 cut(s)	110, 265, 270
Hpy188III	TCNNGA	3 cut(s)	254, 308, 443
Hpy8I	GTNNAC	6 cut(s)	55, 91, 239, 340, 364, 399
HpyAV	CCTTC	2 cut(s)	227, 487
HpyCH4III	ACNGT	5 cut(s)	52, 250, 278, 337, 461
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	5 cut(s)	33, 123, 177, 327, 399
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 120, 513, 517
HpyF3I	CTNAG	3 cut(s)	140, 512, 543
HpySE526I	ACGT	1 cut(s)	8
Hsp92II	CATG	2 cut(s)	42, 407
Ksp22I	TGATCA	3 cut(s)	64, 190, 417
Kzo9I	GATC	5 cut(s)	64, 190, 260, 265, 417
LmnI	GCTCC	1 cut(s)	213
LpnPI	CCDG	5 cut(s)	38, 195, 285, 407, 521
LweI	GCATC	3 cut(s)	101, 457, 475
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	5 cut(s)	66, 192, 262, 267, 419
MboI	GATC	5 cut(s)	64, 190, 260, 265, 417
MboII	GAAGA	3 cut(s)	58, 475, 536
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	2 cut(s)	131, 401
MluCI	AATT	1 cut(s)	145
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	8 cut(s)	8, 143, 154, 163, 192, 401, 529, 553
MseI	TTAA	2 cut(s)	201, 531
MspA1I	CMGCKG	1 cut(s)	196
MspI	CCGG	1 cut(s)	394
MwoI	GCNNNNNNNGC	4 cut(s)	111, 120, 513, 517
NdeII	GATC	5 cut(s)	64, 190, 260, 265, 417
NlaIII	CATG	2 cut(s)	42, 407
NlaIV	GGNNCC	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	538
NspI	RCATGY	1 cut(s)	42
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
Psp1406I	AACGTT	1 cut(s)	8
PspFI	CCCAGC	1 cut(s)	299
PspN4I	GGNNCC	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	196
SaqAI	TTAA	2 cut(s)	201, 531
Sau3AI	GATC	5 cut(s)	64, 190, 260, 265, 417
SchI	GAGTC	1 cut(s)	298
SduI	GDGCHC	2 cut(s)	131, 401
SfaNI	GCATC	3 cut(s)	101, 457, 475
SfcI	CTRYAG	1 cut(s)	460
SmlI	CTYRAG	2 cut(s)	134, 306
SmoI	CTYRAG	2 cut(s)	134, 306
Sse9I	AATT	1 cut(s)	145
TaaI	ACNGT	5 cut(s)	52, 250, 278, 337, 461
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	3 cut(s)	253, 287, 348
TasI	AATT	1 cut(s)	145
Tru1I	TTAA	2 cut(s)	201, 531
Tru9I	TTAA	2 cut(s)	201, 531
TscAI	CASTG	2 cut(s)	79, 125
TseFI	GTSAC	1 cut(s)	538
Tsp45I	GTSAC	1 cut(s)	538
TspRI	CASTG	2 cut(s)	79, 125
VneI	GTGCAC	1 cut(s)	397
XceI	RCATGY	1 cut(s)	42
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XmiI	GTMKAC	3 cut(s)	54, 90, 238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.