Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Reverse (-)

3346383 .. 3348139

Gene Structure 1757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G10200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCGTTCGCAGGAACAACCCAGAAATGCATGGCATGTGACAAAACAGTTTATCTTGTCGACAAGTTAACCGCCGATAACCGGGTCTACCACAAAGCTTGTTTCCGATGTCACCATTGCAAAGGAACTCTCAAGCTTAGCAATTACAACTCCTTTGAAGGAGTTCTCTACTGCAGACCACATTTCGATCAAAACTTCAAGAGAACTGGAAGTCTTGAGAAAAGCTTCGAAGGGACACCAAAGATTGGGAAACCTGATAGGCCTTTGGAGGGAGAGAGACCTGCTGGAACCAAAGTTTCGAATATGTTTGGTGGAACACGAGAGAAATGCGTTGGTTGCGACAAAACCGTGTATCCAATTGAGAAGGTATCGGTGAATGGAACATTGTACCACAAGAGCTGCTTCAAGTGTACACATGGAGGCTGCACGATAAGCCCTTCGAATTACATAGCTCACGAGGGTAAGCTATATTGCAAGCATCATCATATTCAGCTGATCAAGGAGAAAGGAAACTTGAGCCAGCTCGAAGGAGGAGGAGAGAATGCCGCCAAGGACAAAGTCGTCGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044464 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0071944 GO:0097159 GO:0097435 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

190

Amino Acids

21.04

Weight (kDa)

9.1

Isoelectric Point (pI)

27.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM	PF00412	10 - 66	1.6e-10	LIM domain
LIM	PF00412	110 - 164	6.7e-12	LIM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	560
Acc36I	ACCTGC	1 cut(s)	289
AccB7I	CCANNNNNTGG	1 cut(s)	245
AccI	GTMKAC	2 cut(s)	60, 87
AciI	CCGC	2 cut(s)	72, 546
AfaI	GTAC	2 cut(s)	389, 412
AfiI	CCNNNNNNNGG	3 cut(s)	81, 245, 269
AgsI	TTSAA	3 cut(s)	158, 199, 406
AluBI	AGCT	8 cut(s)	98, 136, 225, 399, 452, 466, 493, 523
AluI	AGCT	8 cut(s)	98, 136, 225, 399, 452, 466, 493, 523
Alw26I	GTCTC	1 cut(s)	271
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	3 cut(s)	399, 423, 566
Asp700I	GAANNNNTTC	2 cut(s)	162, 224
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	104, 385
AsuII	TTCGAA	3 cut(s)	228, 299, 440
BauI	CACGAG	2 cut(s)	318, 455
BbvI	GCAGC	3 cut(s)	386, 410, 553
BcgI	CGANNNNNNTGC	2 cut(s)	309, 343
BciVI	GTATCC	1 cut(s)	363
BclI	TGATCA	1 cut(s)	495
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	271
BfmI	CTRYAG	1 cut(s)	172
BfuAI	ACCTGC	1 cut(s)	289
BfuI	GTATCC	1 cut(s)	363
BisI	GCNGC	4 cut(s)	400, 424, 546, 567
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	4 cut(s)	401, 425, 547, 568
Bme1390I	CCNGG	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	289
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	487
Bpu1102I	GCTNAGC	1 cut(s)	137
Bpu14I	TTCGAA	3 cut(s)	228, 299, 440
BpuEI	CTTGAG	3 cut(s)	116, 236, 535
BpuMI	CCSGG	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	549
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 245, 269
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	1 cut(s)	115
BseDI	CCNNGG	1 cut(s)	549
BseLI	CCNNNNNNNGG	3 cut(s)	81, 245, 269
BseMI	GCAATG	1 cut(s)	115
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	2 cut(s)	546, 549
BseXI	GCAGC	3 cut(s)	386, 410, 553
BsgI	GTGCAG	1 cut(s)	409
BshFI	GGCC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	3 cut(s)	81, 245, 269
BsmAI	GTCTC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	1 cut(s)	262
Bso31I	GGTCTC	1 cut(s)	271
Bsp119I	TTCGAA	3 cut(s)	228, 299, 440
Bsp1407I	TGTACA	1 cut(s)	410
Bsp143I	GATC	2 cut(s)	187, 495
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	2 cut(s)	72, 546
BspANI	GGCC	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	289
BspMAI	CTGCAG	1 cut(s)	176
BspMI	ACCTGC	1 cut(s)	289
BspT104I	TTCGAA	3 cut(s)	228, 299, 440
BspTNI	GGTCTC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	115
BsrGI	TGTACA	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	549
BssMI	GATC	2 cut(s)	187, 495
BssSI	CACGAG	2 cut(s)	318, 455
BssT1I	CCWWGG	1 cut(s)	549
Bst2BI	CACGAG	2 cut(s)	318, 455
Bst4CI	ACNGT	2 cut(s)	49, 349
BstAUI	TGTACA	1 cut(s)	410
BstBI	TTCGAA	3 cut(s)	228, 299, 440
BstC8I	GCNNGC	2 cut(s)	476, 521
BstDEI	CTNAG	1 cut(s)	137
BstKTI	GATC	2 cut(s)	190, 498
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	2 cut(s)	187, 495
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 432
BstNSI	RCATGY	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	172
BstV1I	GCAGC	3 cut(s)	386, 410, 553
BsuI	GTATCC	1 cut(s)	363
BsuRI	GGCC	1 cut(s)	262
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	476, 521
Csp6I	GTAC	2 cut(s)	388, 411
CspCI	CAANNNNNGTGG	2 cut(s)	80, 115
CviAII	CATG	3 cut(s)	31, 36, 416
CviQI	GTAC	2 cut(s)	388, 411
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	2 cut(s)	189, 497
DpnII	GATC	2 cut(s)	187, 495
DrdI	GACNNNNNNGTC	1 cut(s)	560
DseDI	GACNNNNNNGTC	1 cut(s)	560
Eco130I	CCWWGG	1 cut(s)	549
Eco147I	AGGCCT	1 cut(s)	262
Eco31I	GGTCTC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	549
EcoT22I	ATGCAT	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	3 cut(s)	34, 39, 419
FaiI	YATR	7 cut(s)	32, 37, 305, 417, 449, 469, 486
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	3 cut(s)	30, 35, 415
FbaI	TGATCA	1 cut(s)	495
FblI	GTMKAC	2 cut(s)	60, 87
Fnu4HI	GCNGC	4 cut(s)	400, 424, 546, 567
Fsp4HI	GCNGC	4 cut(s)	400, 424, 546, 567
GluI	GCNGC	4 cut(s)	400, 424, 546, 567
HaeIII	GGCC	1 cut(s)	262
HapII	CCGG	1 cut(s)	82
Hin1II	CATG	3 cut(s)	34, 39, 419
HincII	GTYRAC	2 cut(s)	61, 69
HindII	GTYRAC	2 cut(s)	61, 69
HindIII	AAGCTT	3 cut(s)	96, 134, 223
HpaI	GTTAAC	1 cut(s)	69
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	2 cut(s)	104, 385
Hpy166II	GTNNAC	5 cut(s)	61, 69, 88, 411, 413
Hpy188I	TCNGA	1 cut(s)	107
Hpy188III	TCNNGA	3 cut(s)	199, 215, 455
Hpy8I	GTNNAC	5 cut(s)	61, 69, 88, 411, 413
Hpy99I	CGWCG	1 cut(s)	566
HpyAV	CCTTC	5 cut(s)	152, 224, 358, 447, 521
HpyCH4III	ACNGT	2 cut(s)	49, 349
HpyCH4V	TGCA	5 cut(s)	30, 120, 174, 426, 474
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 432
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	3 cut(s)	34, 39, 419
Ksp22I	TGATCA	1 cut(s)	495
KspAI	GTTAAC	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	187, 495
LpnPI	CCDG	7 cut(s)	35, 95, 192, 267, 270, 294, 533
Lsp1109I	GCAGC	3 cut(s)	386, 410, 553
LweI	GCATC	1 cut(s)	487
MaeIII	GTNAC	2 cut(s)	38, 110
MalI	GATC	2 cut(s)	189, 497
MboI	GATC	2 cut(s)	187, 495
MfeI	CAATTG	1 cut(s)	357
MluCI	AATT	3 cut(s)	142, 357, 442
MnlI	CCTC	5 cut(s)	262, 413, 451, 524, 527
Mph1103I	ATGCAT	1 cut(s)	32
MroXI	GAANNNNTTC	2 cut(s)	162, 224
MseI	TTAA	2 cut(s)	68, 571
MspA1I	CMGCKG	1 cut(s)	493
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	83
MunI	CAATTG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	547
MwoI	GCNNNNNNNGC	2 cut(s)	336, 432
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	2 cut(s)	187, 495
NlaIII	CATG	3 cut(s)	34, 39, 419
NlaIV	GGNNCC	1 cut(s)	289
NmuCI	GTSAC	2 cut(s)	38, 110
NsiI	ATGCAT	1 cut(s)	32
NspI	RCATGY	1 cut(s)	39
NspV	TTCGAA	3 cut(s)	228, 299, 440
PceI	AGGCCT	1 cut(s)	262
PctI	GAATGC	1 cut(s)	547
PdmI	GAANNNNTTC	2 cut(s)	162, 224
PflFI	GACNNNGTC	1 cut(s)	557
PflMI	CCANNNNNTGG	1 cut(s)	245
PkrI	GCNGC	4 cut(s)	401, 425, 547, 568
PspN4I	GGNNCC	1 cut(s)	289
PstI	CTGCAG	1 cut(s)	176
PsyI	GACNNNGTC	1 cut(s)	557
PvuII	CAGCTG	1 cut(s)	493
RsaI	GTAC	2 cut(s)	389, 412
RsaNI	GTAC	2 cut(s)	388, 411
SalI	GTCGAC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	68, 571
SatI	GCNGC	4 cut(s)	400, 424, 546, 567
Sau3AI	GATC	2 cut(s)	187, 495
ScrFI	CCNGG	1 cut(s)	83
SfaNI	GCATC	1 cut(s)	487
SfcI	CTRYAG	1 cut(s)	172
SfuI	TTCGAA	3 cut(s)	228, 299, 440
SmlI	CTYRAG	3 cut(s)	131, 215, 514
SmoI	CTYRAG	3 cut(s)	131, 215, 514
Sse9I	AATT	3 cut(s)	142, 357, 442
SseBI	AGGCCT	1 cut(s)	262
SsiI	CCGC	2 cut(s)	72, 546
StuI	AGGCCT	1 cut(s)	262
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	2 cut(s)	49, 349
TaqI	TCGA	6 cut(s)	60, 186, 228, 299, 440, 525
TasI	AATT	3 cut(s)	142, 357, 442
TatI	WGTACW	1 cut(s)	410
TauI	GCSGC	1 cut(s)	548
Tru1I	TTAA	2 cut(s)	68, 571
Tru9I	TTAA	2 cut(s)	68, 571
TseFI	GTSAC	2 cut(s)	38, 110
TseI	GCWGC	3 cut(s)	399, 423, 566
Tsp45I	GTSAC	2 cut(s)	38, 110
Tth111I	GACNNNGTC	1 cut(s)	557
Van91I	CCANNNNNTGG	1 cut(s)	245
XceI	RCATGY	1 cut(s)	39
XmiI	GTMKAC	2 cut(s)	60, 87
XmnI	GAANNNNTTC	2 cut(s)	162, 224
Zsp2I	ATGCAT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.