RLG00000005341

Pollen-specific protein SF3-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
66902142 .. 66904368
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005341

Sequence Viewer

Length: 567 bp
ATGGCAACATTTGCAGGGACAACCCAGAAGTGCAAGGCATGTGAGAAGACCGTGTACTTGGTTGATCAGCTCACTGCTGACAACAAAGTCTACCACAAGGCTTGTTTCAGATGCCACCACTGCAAAGGAACCCTCAAGCTCAGTAATTATTCCTCGTTTGAGGGTGTTTTATATTGCAAGCCTCACTTTGATCAGCTATTTAAGATGACTGGCAGCTTGGATAAAAGTTTTGAAGGTAACCCAAAAACTGTGAGAGACAGGTCTGCTGATCAGGTCAATAGCAAAGTTTCCAGTATGTTTGCTGGAACTCAAGAAAAGTGTGTTGCTTGCAAGAAAACAGTTTACCCAACTGAAAAGGTGGGAGTTGATGGAACATCATACCATAAGGCTTGTTTCAGGTGCACCCATGGCGGCTGTGTGATCAGTCCATCAAACTATGTAGCTCACGAGCACCGTCTCTATTGTAAGCATCACCATAACCAGCTATTCAAGCAGAAGGGAAACTTCAGCCAACTAGACAAGCATGAAGAAGCTAAAGAGGTGACTGAGAACACAGTGGCGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

189

Amino Acids

21.2

Weight (kDa)

8.86

Isoelectric Point (pI)

28.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIM PF00412 11 - 66 4.5e-11 LIM domain
LIM PF00412 107 - 163 1.6e-10 LIM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
AccI GTMKAC 1 cut(s) 90
AciI CCGC 2 cut(s) 411, 560
AcuI CTGAAG 1 cut(s) 490
AfaI GTAC 1 cut(s) 56
AgsI TTSAA 2 cut(s) 233, 490
AluBI AGCT 7 cut(s) 70, 139, 196, 216, 443, 484, 533
AluI AGCT 7 cut(s) 70, 139, 196, 216, 443, 484, 533
Alw21I GWGCWC 2 cut(s) 404, 453
Alw26I GTCTC 2 cut(s) 249, 461
Alw44I GTGCAC 1 cut(s) 400
ApaLI GTGCAC 1 cut(s) 400
ApeKI GCWGC 1 cut(s) 213
AsuHPI GGTGA 2 cut(s) 464, 553
BaeGI GKGCMC 1 cut(s) 404
BarI GAAGNNNNNNTAC 2 cut(s) 38, 70
BauI CACGAG 1 cut(s) 446
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 2 cut(s) 404, 453
BbvI GCAGC 1 cut(s) 225
BccI CCATC 2 cut(s) 362, 436
BclI TGATCA 4 cut(s) 64, 190, 268, 420
BcoDI GTCTC 2 cut(s) 249, 461
BfaI CTAG 1 cut(s) 515
BisI GCNGC 2 cut(s) 214, 412
BlsI GCNGC 2 cut(s) 215, 413
BmiI GGNNCC 1 cut(s) 130
BmsI GCATC 2 cut(s) 101, 478
BpiI GAAGAC 1 cut(s) 53
BpuEI CTTGAG 2 cut(s) 119, 294
BsaJI CCNNGG 1 cut(s) 406
Bse1I ACTGG 2 cut(s) 214, 291
BseDI CCNNGG 1 cut(s) 406
BseMII CTCAG 2 cut(s) 154, 537
BseNI ACTGG 2 cut(s) 214, 291
BseSI GKGCMC 1 cut(s) 404
BseXI GCAGC 1 cut(s) 225
BsiHKAI GWGCWC 2 cut(s) 404, 453
BslFI GGGAC 1 cut(s) 31
BsmAI GTCTC 2 cut(s) 249, 461
BsmBI CGTCTC 1 cut(s) 461
BsmFI GGGAC 1 cut(s) 31
Bsp1286I GDGCHC 2 cut(s) 404, 453
Bsp143I GATC 4 cut(s) 64, 190, 268, 420
Bsp19I CCATGG 1 cut(s) 406
BspACI CCGC 2 cut(s) 411, 560
BspCNI CTCAG 2 cut(s) 153, 538
BspLI GGNNCC 1 cut(s) 130
BsrI ACTGG 2 cut(s) 214, 291
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 4 cut(s) 64, 190, 268, 420
BssSI CACGAG 1 cut(s) 446
BssT1I CCWWGG 1 cut(s) 406
Bst2BI CACGAG 1 cut(s) 446
Bst4CI ACNGT 5 cut(s) 52, 250, 340, 455, 556
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 179, 328
BstDEI CTNAG 2 cut(s) 140, 546
BstDSI CCRYGG 1 cut(s) 406
BstEII GGTNACC 1 cut(s) 236
BstKTI GATC 4 cut(s) 67, 193, 271, 423
BstMAI GTCTC 2 cut(s) 249, 461
BstMBI GATC 4 cut(s) 64, 190, 268, 420
BstMWI GCNNNNNNNGC 4 cut(s) 11, 120, 408, 490
BstNSI RCATGY 1 cut(s) 42
BstPI GGTNACC 1 cut(s) 236
BstSLI GKGCMC 1 cut(s) 404
BstV1I GCAGC 1 cut(s) 225
BstV2I GAAGAC 1 cut(s) 53
BtgI CCRYGG 1 cut(s) 406
BtsI GCAGTG 2 cut(s) 72, 118
BtsIMutI CAGTG 3 cut(s) 72, 118, 561
Cac8I GCNNGC 2 cut(s) 179, 328
Csp6I GTAC 1 cut(s) 55
CspCI CAANNNNNGTGG 2 cut(s) 83, 118
CviAII CATG 3 cut(s) 39, 407, 524
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 2 cut(s) 140, 546
DpnI GATC 4 cut(s) 66, 192, 270, 422
DpnII GATC 4 cut(s) 64, 190, 268, 420
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 406
Eco57I CTGAAG 1 cut(s) 490
Eco91I GGTNACC 1 cut(s) 236
EcoO65I GGTNACC 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 406
Esp3I CGTCTC 1 cut(s) 461
FaeI CATG 3 cut(s) 42, 410, 527
FaiI YATR 9 cut(s) 40, 172, 296, 379, 384, 408, 438, 477, 525
FalI AAGNNNNNCTT 4 cut(s) 170, 202, 488, 520
FaqI GGGAC 1 cut(s) 31
FatI CATG 3 cut(s) 38, 406, 523
FbaI TGATCA 4 cut(s) 64, 190, 268, 420
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 214, 412
Fsp4HI GCNGC 2 cut(s) 214, 412
FspBI CTAG 1 cut(s) 515
GluI GCNGC 2 cut(s) 214, 412
Hin1II CATG 3 cut(s) 42, 410, 527
HphI GGTGA 2 cut(s) 464, 553
Hpy166II GTNNAC 4 cut(s) 55, 91, 343, 402
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 2 cut(s) 311, 446
Hpy8I GTNNAC 4 cut(s) 55, 91, 343, 402
HpyAV CCTTC 2 cut(s) 227, 490
HpyCH4III ACNGT 5 cut(s) 52, 250, 340, 455, 556
HpyCH4V TGCA 6 cut(s) 14, 33, 123, 177, 330, 402
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 120, 408, 490
HpyF3I CTNAG 2 cut(s) 140, 546
Hsp92II CATG 3 cut(s) 42, 410, 527
Ksp22I TGATCA 4 cut(s) 64, 190, 268, 420
Kzo9I GATC 4 cut(s) 64, 190, 268, 420
LpnPI CCDG 8 cut(s) 38, 195, 244, 257, 288, 304, 382, 494
Lsp1109I GCAGC 1 cut(s) 225
LweI GCATC 2 cut(s) 101, 478
MaeI CTAG 1 cut(s) 515
MaeIII GTNAC 2 cut(s) 236, 541
MalI GATC 4 cut(s) 66, 192, 270, 422
MboI GATC 4 cut(s) 64, 190, 268, 420
MboII GAAGA 2 cut(s) 58, 539
MhlI GDGCHC 2 cut(s) 404, 453
MluCI AATT 1 cut(s) 145
MnlI CCTC 5 cut(s) 143, 154, 163, 192, 532
MseI TTAA 1 cut(s) 201
MwoI GCNNNNNNNGC 4 cut(s) 11, 120, 408, 490
NcoI CCATGG 1 cut(s) 406
NdeII GATC 4 cut(s) 64, 190, 268, 420
NlaIII CATG 3 cut(s) 42, 410, 527
NlaIV GGNNCC 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 541
NspI RCATGY 1 cut(s) 42
PkrI GCNGC 2 cut(s) 215, 413
PspEI GGTNACC 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 130
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 2 cut(s) 214, 412
Sau3AI GATC 4 cut(s) 64, 190, 268, 420
SduI GDGCHC 2 cut(s) 404, 453
SfaNI GCATC 2 cut(s) 101, 478
SmlI CTYRAG 2 cut(s) 134, 309
SmoI CTYRAG 2 cut(s) 134, 309
Sse9I AATT 1 cut(s) 145
SsiI CCGC 2 cut(s) 411, 560
SspMI CTAG 1 cut(s) 515
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 5 cut(s) 52, 250, 340, 455, 556
TasI AATT 1 cut(s) 145
TatI WGTACW 1 cut(s) 54
TauI GCSGC 1 cut(s) 414
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 3 cut(s) 79, 125, 561
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 1 cut(s) 540
TspRI CASTG 3 cut(s) 79, 125, 561
VneI GTGCAC 1 cut(s) 400
XceI RCATGY 1 cut(s) 42
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.