Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000896

Physical Location & Seq

Genomic Coordinates Reverse (-)

36454501 .. 36463431

Gene Structure 8931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G422200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCATTTGCAGGAACAACCCAGAAGTGCATGGCTTGTGACAAGACTGTGTATCTGGTTGATAAGCTAACAGCGGATAACCGTATCTACCACAAAGCCTGCTTTCGATGCCACCACTGCAAGGGAACCCTCAAGCTCAGCAACTACAATTCATTTGAGGGAGTGCTGTACTGCAGGCCACATTTTGATCAGCTCTTTAAAAGAACTGGCAGTCTTGACAAAAGTTTTGAAGGGACACCAAAAATTGTAAAACCAGAGAGACCTGTTGATAATGAGAAACCTGCAGTAGCCAAAGCTTCAAGTATGTTTGGTGGAACCAGAGATAAATGCTTTGGCTGCAAGAATACTGTTTATCCAACAGAAAAGGTTACTGTGAATGGGACTCCTTACCACAAGATGTGTTTCAAATGCTCACATGGAGGATGTACGATCAGCCCATCAAACTATATTGCGCACGAGGGCCGACTCTACTGTAAACACCACCACACCCAACTCATCAAGGAGAAAGGAAACTTAAGCCAGCTTGAGGGTGACTCTGAGAAGAACACCGTCGATGAGAATGCCAGTGCCAGAGAAGTTGCTGCCGAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044464 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0071944 GO:0097159 GO:0097435 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM

Protein Analysis

198

Amino Acids

22.04

Weight (kDa)

8.86

Isoelectric Point (pI)

25.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10200 AT1G10200
fragaria_vesca	FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g03760 FvH4_2g32970 FvH4_5g16510
malus_domestica	MD05G1101500.v1.1 MD06G1178800.v1.1 MD08G1081300.v1.1 MD08G1081400.v1.1 MD14G1185200.v1.1 MD15G1068200.v1.1
prunus_persica	Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.1G422200_v2.0.a1 Prupe.5G177900_v2.0.a1 Prupe.8G146000_v2.0.a1
pyrus_communis	pycom05g09980 pycom06g15890 pycom08g06700 pycom14g15410 pycom15g06460
rosa_chinensis	RchiOBHm_Chr6g0252741 RchiOBHm_Chr6g0309731 RchiOBHm_Chr7g0179581
rosa_laevigata	RLG00000005341 RLG00000010540 RLG00000015065
rosa_multiflora	Rmu_co8337263.1_g000001 Rmu_sc0000829.1_g000044 Rmu_sc0005329.1_g000022 Rmu_sc0007632.1_g000011 Rmu_sc0030729.1_g000001 Rmu_sc0036085.1_g000002
rosa_roxburghii	Rroxscaffold_155G00443910 Rroxscaffold_3G00273640 Rroxscaffold_7G00159230 Rroxscaffold_7G00212430
rosa_rugosa	Rorug05G0538500 Rorug05G0538600 Rorug05G0538700 Rorug05G0538800 Rorug05G0538800 Rorug05G0538800 Rorug06G0374200 Rorug06G0426300
rosa_samantha	Rh6AG054700 Rh6AG487600 Rh6BG048600 Rh6BG497200 Rh6CG501900 Rh6DG488200 Rh7DG026300
rosa_wichuraiana	Rw6G004940 Rw6G042460 Rw7G002060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	453
Acc36I	ACCTGC	1 cut(s)	289
AciI	CCGC	1 cut(s)	74
AfaI	GTAC	2 cut(s)	170, 427
AfiI	CCNNNNNNNGG	2 cut(s)	121, 526
AflII	CTTAAG	1 cut(s)	514
AgsI	TTSAA	3 cut(s)	230, 300, 406
AluBI	AGCT	5 cut(s)	67, 136, 193, 296, 523
AluI	AGCT	5 cut(s)	67, 136, 193, 296, 523
Alw26I	GTCTC	1 cut(s)	253
AoxI	GGCC	2 cut(s)	176, 460
ApeKI	GCWGC	2 cut(s)	336, 581
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	1 cut(s)	460
AsuHPI	GGTGA	1 cut(s)	542
BauI	CACGAG	1 cut(s)	455
BbvI	GCAGC	2 cut(s)	323, 568
BccI	CCATC	1 cut(s)	445
BcgI	CGANNNNNNTGC	2 cut(s)	542, 576
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	253
BfmI	CTRYAG	2 cut(s)	172, 282
BfrI	CTTAAG	1 cut(s)	514
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	2 cut(s)	337, 582
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	2 cut(s)	338, 583
BmgT120I	GGNCC	1 cut(s)	460
BmiI	GGNNCC	2 cut(s)	127, 316
BmsI	GCATC	1 cut(s)	98
BplI	GAGNNNNNCTC	2 cut(s)	518, 550
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	2 cut(s)	116, 545
BsaI	GGTCTC	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 526
Bse1I	ACTGG	2 cut(s)	211, 564
BseGI	GGATG	1 cut(s)	428
BseLI	CCNNNNNNNGG	2 cut(s)	121, 526
BseMII	CTCAG	2 cut(s)	151, 528
BseNI	ACTGG	2 cut(s)	211, 564
BseXI	GCAGC	2 cut(s)	323, 568
BshFI	GGCC	2 cut(s)	178, 462
BslFI	GGGAC	2 cut(s)	247, 394
BslI	CCNNNNNNNGG	2 cut(s)	121, 526
BsmAI	GTCTC	1 cut(s)	253
BsmFI	GGGAC	2 cut(s)	247, 394
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	2 cut(s)	178, 462
Bso31I	GGTCTC	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	187, 429
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	2 cut(s)	178, 462
BspCNI	CTCAG	2 cut(s)	150, 529
BspLI	GGNNCC	2 cut(s)	127, 316
BspMAI	CTGCAG	2 cut(s)	176, 286
BspMI	ACCTGC	1 cut(s)	289
BspTI	CTTAAG	1 cut(s)	514
BspTNI	GGTCTC	1 cut(s)	253
BsrI	ACTGG	2 cut(s)	211, 564
BssMI	GATC	2 cut(s)	187, 429
BssSI	CACGAG	1 cut(s)	455
Bst2BI	CACGAG	1 cut(s)	455
Bst4CI	ACNGT	6 cut(s)	49, 83, 349, 373, 473, 550
BstAFI	CTTAAG	1 cut(s)	514
BstC8I	GCNNGC	3 cut(s)	100, 176, 521
BstDEI	CTNAG	2 cut(s)	137, 537
BstF5I	GGATG	1 cut(s)	428
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	2 cut(s)	190, 432
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	2 cut(s)	187, 429
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 117, 336
BstSFI	CTRYAG	2 cut(s)	172, 282
BstV1I	GCAGC	2 cut(s)	323, 568
BsuRI	GGCC	2 cut(s)	178, 462
BtsCI	GGATG	1 cut(s)	428
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	115, 571
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	3 cut(s)	100, 176, 521
CfoI	GCGC	1 cut(s)	454
Cfr13I	GGNCC	1 cut(s)	460
Csp6I	GTAC	2 cut(s)	169, 426
CviAII	CATG	2 cut(s)	31, 416
CviQI	GTAC	2 cut(s)	169, 426
DdeI	CTNAG	2 cut(s)	137, 537
DpnI	GATC	2 cut(s)	189, 431
DpnII	GATC	2 cut(s)	187, 429
DraI	TTTAAA	1 cut(s)	199
Eco31I	GGTCTC	1 cut(s)	253
FaeI	CATG	2 cut(s)	34, 419
FaiI	YATR	5 cut(s)	32, 305, 417, 447, 592
FaqI	GGGAC	2 cut(s)	247, 394
FatI	CATG	2 cut(s)	30, 415
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	337, 582
FokI	GGATG	1 cut(s)	435
Fsp4HI	GCNGC	2 cut(s)	337, 582
FspI	TGCGCA	1 cut(s)	453
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	2 cut(s)	337, 582
HaeIII	GGCC	2 cut(s)	178, 462
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	2 cut(s)	34, 419
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	3 cut(s)	382, 465, 533
HphI	GGTGA	1 cut(s)	542
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	1 cut(s)	538
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	1 cut(s)	476
Hpy99I	CGWCG	1 cut(s)	554
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	6 cut(s)	49, 83, 349, 373, 473, 550
HpyCH4V	TGCA	6 cut(s)	11, 30, 120, 174, 284, 339
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 117, 336
HpyF3I	CTNAG	2 cut(s)	137, 537
Hsp92II	CATG	2 cut(s)	34, 419
HspAI	GCGC	1 cut(s)	452
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	187, 429
Lsp1109I	GCAGC	2 cut(s)	323, 568
LweI	GCATC	1 cut(s)	98
MaeIII	GTNAC	3 cut(s)	38, 367, 530
MalI	GATC	2 cut(s)	189, 431
MboI	GATC	2 cut(s)	187, 429
MboII	GAAGA	1 cut(s)	553
MluCI	AATT	2 cut(s)	148, 243
MlyI	GAGTC	3 cut(s)	376, 459, 527
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	5 cut(s)	140, 151, 413, 451, 520
MseI	TTAA	2 cut(s)	198, 515
MspA1I	CMGCKG	1 cut(s)	74
MspCI	CTTAAG	1 cut(s)	514
Mva1269I	GAATGC	1 cut(s)	565
MwoI	GCNNNNNNNGC	3 cut(s)	108, 117, 336
NdeII	GATC	2 cut(s)	187, 429
NlaIII	CATG	2 cut(s)	34, 419
NlaIV	GGNNCC	2 cut(s)	127, 316
NmuCI	GTSAC	2 cut(s)	38, 530
NsbI	TGCGCA	1 cut(s)	453
PctI	GAATGC	1 cut(s)	565
PkrI	GCNGC	2 cut(s)	338, 583
PleI	GAGTC	3 cut(s)	376, 459, 527
PpsI	GAGTC	3 cut(s)	376, 459, 527
PspN4I	GGNNCC	2 cut(s)	127, 316
PspPI	GGNCC	1 cut(s)	460
PstI	CTGCAG	2 cut(s)	176, 286
RsaI	GTAC	2 cut(s)	170, 427
RsaNI	GTAC	2 cut(s)	169, 426
SaqAI	TTAA	2 cut(s)	198, 515
SatI	GCNGC	2 cut(s)	337, 582
Sau3AI	GATC	2 cut(s)	187, 429
Sau96I	GGNCC	1 cut(s)	460
SchI	GAGTC	3 cut(s)	376, 459, 527
SetI	ASST	8 cut(s)	69, 138, 195, 265, 283, 298, 369, 525
SfaNI	GCATC	1 cut(s)	98
SfcI	CTRYAG	2 cut(s)	172, 282
SmlI	CTYRAG	3 cut(s)	131, 514, 524
SmoI	CTYRAG	3 cut(s)	131, 514, 524
Sse9I	AATT	2 cut(s)	148, 243
SsiI	CCGC	1 cut(s)	74
TaaI	ACNGT	6 cut(s)	49, 83, 349, 373, 473, 550
TaqI	TCGA	2 cut(s)	106, 552
TasI	AATT	2 cut(s)	148, 243
TatI	WGTACW	1 cut(s)	168
Tru1I	TTAA	2 cut(s)	198, 515
Tru9I	TTAA	2 cut(s)	198, 515
TscAI	CASTG	2 cut(s)	122, 571
TseFI	GTSAC	2 cut(s)	38, 530
TseI	GCWGC	2 cut(s)	336, 581
Tsp45I	GTSAC	2 cut(s)	38, 530
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	2 cut(s)	122, 571
Vha464I	CTTAAG	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.