Rh6CG502200

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0015557
Physical Location & Seq
Reverse (-)
66509710 .. 66510534
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG502200.1

Sequence Viewer

Length: 825 bp
ATGGCGACCAATGAAGAAGATTCAAGGCTCTCTGACATTCAGCTAGCCTGCACAGACTTGAGAACCCTACTCAAAGCCTCTGCCTTGATGGAACAGAATCTGAAAAAGATGGACTACAAGTTTAACCTCATTGACGAAACACTAACCTCAGCCTCAAGAAGAGTAGCTCCATTACAGTCCATGTCCATGGCCTCCAGGGCCCTGGAAACCAGAATCAACCGAGCTGTCACGCCGGCCCTTGCGCTCCTCGACAACTTCAAGCGATCAGAGTCTATACAGGACAAGCTTCTCGACTTGTCATCGAAGTTGTCAAACGAGAAGAACATGAACAAGAGGCTCAAGACGCTCATCAAGTACGTGGACTGTGTGGATCAGCTCAAGGCGGCGATAAGCTCCATATGCGAGGAGGGCGAGCCGGTGATCCAGAGGCTTCAGGAGGTGGTGGAGTTTCTGAGCAGGACGAAGGCGACTGATCAGTACAGGATCCATCGGTTGAGGGAGACTCTGATCACTTTGAAGGCCTTGTATGAGACAGAGGTGGATGCTATGAGATTTGAAGGGCTGCTTGATGAGGCTTTGCTGAATTTGCAGGATGAGTATGAGAATATATTGCAGCAAATAAAGCATCAAAATATAGTGGATCAATCACAGGCTGTAGATAAGGATAATGAAGGTGATGATCAGATGGTGATCATGGGTTCTAATTTGGGCACTGAGTTGGAAATTGAACTTCTAAGGCGGATCTCACAAACCCTAGCTGCCGAAGATTGTTTGGATATATGCATCGATATTTATGTTAAGGTAACATTTGCTAATTTTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Exo70

Protein Analysis

274

Amino Acids

31.27

Weight (kDa)

4.84

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015557)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32950
malus_domestica MD08G1081000.v1.1 MD15G1068000.v1.1
prunus_persica Prupe.1G422000_v2.0.a1
pyrus_communis pycom15g06440
rosa_chinensis RchiOBHm_Chr6g0309751
rosa_laevigata RLG00000010538
rosa_multiflora Rmu_sc0007632.1_g000013
rosa_roxburghii Rroxscaffold_7G00159210
rosa_rugosa Rorug06G0374200
rosa_samantha Rh6AG487800 Rh6BG497400 Rh6CG502100 Rh6CG502200 Rh6DG488400
rosa_wichuraiana Rw6G042480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 383, 739
AclWI GGATC 6 cut(s) 378, 415, 478, 491, 648, 749
AcsI RAATTY 1 cut(s) 583
AcuI CTGAAG 1 cut(s) 416
AfaI GTAC 2 cut(s) 356, 479
AgsI TTSAA 5 cut(s) 24, 259, 517, 557, 728
AjnI CCWGG 2 cut(s) 194, 201
AluBI AGCT 7 cut(s) 43, 167, 224, 286, 376, 393, 758
AluI AGCT 7 cut(s) 43, 167, 224, 286, 376, 393, 758
Alw26I GTCTC 2 cut(s) 494, 524
AlwI GGATC 6 cut(s) 378, 415, 478, 491, 648, 749
AlwNI CAGNNNCTG 1 cut(s) 100
AoxI GGCC 4 cut(s) 189, 198, 234, 519
ApaI GGGCCC 1 cut(s) 202
ApeKI GCWGC 3 cut(s) 562, 613, 758
ApoI RAATTY 1 cut(s) 583
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 3 cut(s) 198, 199, 235
AsuHPI GGTGA 3 cut(s) 430, 686, 700
AsuNHI GCTAGC 1 cut(s) 43
BaeGI GKGCMC 2 cut(s) 202, 713
BamHI GGATCC 1 cut(s) 483
BanII GRGCYC 1 cut(s) 202
BbvCI CCTCAGC 1 cut(s) 148
BbvI GCAGC 3 cut(s) 549, 625, 745
BccI CCATC 4 cut(s) 82, 103, 495, 679
BciT130I CCWGG 2 cut(s) 196, 203
BclI TGATCA 4 cut(s) 472, 507, 679, 690
BcoDI GTCTC 2 cut(s) 494, 524
BfaI CTAG 2 cut(s) 44, 755
BfmI CTRYAG 1 cut(s) 654
BglI GCCNNNNNGGC 1 cut(s) 197
BisI GCNGC 4 cut(s) 384, 563, 614, 759
BlsI GCNGC 4 cut(s) 385, 564, 615, 760
Bme1390I CCNGG 2 cut(s) 196, 203
BmgT120I GGNCC 3 cut(s) 198, 199, 235
BmiI GGNNCC 2 cut(s) 200, 485
BmrFI CCNGG 2 cut(s) 196, 203
BmsI GCATC 3 cut(s) 532, 634, 792
BmtI GCTAGC 1 cut(s) 47
BplI GAGNNNNNCTC 2 cut(s) 487, 519
BpmI CTGGAG 1 cut(s) 178
Bpu10I CCTNAGC 1 cut(s) 148
BpuEI CTTGAG 4 cut(s) 79, 139, 323, 362
Bsa29I ATCGAT 1 cut(s) 786
BsaAI YACGTR 1 cut(s) 358
BsaBI GATNNNNATC 1 cut(s) 689
BsaJI CCNNGG 3 cut(s) 186, 195, 201
Bse118I RCCGGY 2 cut(s) 232, 415
Bse8I GATNNNNATC 1 cut(s) 689
BseBI CCWGG 2 cut(s) 196, 203
BseCI ATCGAT 1 cut(s) 786
BseDI CCNNGG 3 cut(s) 186, 195, 201
BseGI GGATG 2 cut(s) 547, 598
BseJI GATNNNNATC 1 cut(s) 689
BseMII CTCAG 3 cut(s) 162, 443, 705
BseRI GAGGAG 2 cut(s) 236, 419
BseSI GKGCMC 2 cut(s) 202, 713
BseXI GCAGC 3 cut(s) 549, 625, 745
BsgI GTGCAG 1 cut(s) 34
BshFI GGCC 4 cut(s) 191, 200, 236, 521
BshVI ATCGAT 1 cut(s) 786
BsiSI CCGG 2 cut(s) 233, 416
BsmAI GTCTC 2 cut(s) 494, 524
BsnI GGCC 4 cut(s) 191, 200, 236, 521
Bsp120I GGGCCC 1 cut(s) 198
Bsp1286I GDGCHC 2 cut(s) 202, 713
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 2 cut(s) 383, 739
BspANI GGCC 4 cut(s) 191, 200, 236, 521
BspCNI CTCAG 3 cut(s) 161, 444, 706
BspDI ATCGAT 1 cut(s) 786
BspLI GGNNCC 2 cut(s) 200, 485
BspOI GCTAGC 1 cut(s) 47
BspPI GGATC 6 cut(s) 378, 415, 478, 491, 648, 749
BsrFI RCCGGY 2 cut(s) 232, 415
BssAI RCCGGY 2 cut(s) 232, 415
BssECI CCNNGG 3 cut(s) 186, 195, 201
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 2 cut(s) 196, 203
Bst4CI ACNGT 2 cut(s) 177, 365
Bst6I CTCTTC 1 cut(s) 154
BstBAI YACGTR 1 cut(s) 358
BstC8I GCNNGC 4 cut(s) 45, 49, 234, 413
BstDEI CTNAG 4 cut(s) 148, 452, 714, 734
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 547, 598
BstHHI GCGC 1 cut(s) 244
BstMAI GTCTC 2 cut(s) 494, 524
BstMWI GCNNNNNNNGC 6 cut(s) 197, 343, 399, 408, 586, 622
BstNI CCWGG 2 cut(s) 196, 203
BstSCI CCNGG 2 cut(s) 194, 201
BstSFI CTRYAG 1 cut(s) 654
BstSLI GKGCMC 2 cut(s) 202, 713
BstV1I GCAGC 3 cut(s) 549, 625, 745
BstX2I RGATCY 2 cut(s) 483, 741
BstXI CCANNNNNNTGG 2 cut(s) 187, 202
BstYI RGATCY 2 cut(s) 483, 741
Bsu15I ATCGAT 1 cut(s) 786
BsuRI GGCC 4 cut(s) 191, 200, 236, 521
BsuTUI ATCGAT 1 cut(s) 786
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 2 cut(s) 547, 598
BtsIMutI CAGTG 1 cut(s) 711
Cac8I GCNNGC 4 cut(s) 45, 49, 234, 413
CaiI CAGNNNCTG 1 cut(s) 100
CfoI GCGC 1 cut(s) 244
Cfr10I RCCGGY 2 cut(s) 232, 415
Cfr13I GGNCC 3 cut(s) 198, 199, 235
ClaI ATCGAT 1 cut(s) 786
CseI GACGC 1 cut(s) 352
Csp6I GTAC 2 cut(s) 355, 478
CviAII CATG 4 cut(s) 181, 187, 325, 694
CviQI GTAC 2 cut(s) 355, 478
DdeI CTNAG 4 cut(s) 148, 452, 714, 734
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
EciI GGCGGA 1 cut(s) 754
Eco130I CCWWGG 1 cut(s) 186
Eco147I AGGCCT 1 cut(s) 521
Eco24I GRGCYC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 416
EcoO109I RGGNCCY 2 cut(s) 198, 199
EcoRII CCWGG 2 cut(s) 194, 201
EcoT14I CCWWGG 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 785
EcoT38I GRGCYC 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 4 cut(s) 184, 190, 328, 697
FalI AAGNNNNNCTT 2 cut(s) 549, 581
FatI CATG 4 cut(s) 180, 186, 324, 693
FauNDI CATATG 1 cut(s) 398
FbaI TGATCA 4 cut(s) 472, 507, 679, 690
Fnu4HI GCNGC 4 cut(s) 384, 563, 614, 759
FokI GGATG 2 cut(s) 554, 605
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 4 cut(s) 384, 563, 614, 759
FspBI CTAG 2 cut(s) 44, 755
GlaI GCGC 1 cut(s) 243
GluI GCNGC 4 cut(s) 384, 563, 614, 759
GsuI CTGGAG 1 cut(s) 178
HaeIII GGCC 4 cut(s) 191, 200, 236, 521
HapII CCGG 2 cut(s) 233, 416
HgaI GACGC 1 cut(s) 352
HhaI GCGC 1 cut(s) 244
Hin1II CATG 4 cut(s) 184, 190, 328, 697
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 5 cut(s) 20, 97, 213, 269, 502
HpaII CCGG 2 cut(s) 233, 416
HphI GGTGA 3 cut(s) 430, 686, 700
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 6 cut(s) 34, 102, 268, 453, 507, 684
Hpy188III TCNNGA 5 cut(s) 156, 290, 340, 424, 434
Hpy8I GTNNAC 1 cut(s) 361
HpyAV CCTTC 4 cut(s) 457, 511, 551, 665
HpyCH4III ACNGT 2 cut(s) 177, 365
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 4 cut(s) 51, 589, 613, 783
HpyF10VI GCNNNNNNNGC 6 cut(s) 197, 343, 399, 408, 586, 622
HpyF3I CTNAG 4 cut(s) 148, 452, 714, 734
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 4 cut(s) 184, 190, 328, 697
HspAI GCGC 1 cut(s) 242
KroI GCCGGC 1 cut(s) 232
KroNI GCCGGC 1 cut(s) 234
Ksp22I TGATCA 4 cut(s) 472, 507, 679, 690
LmnI GCTCC 3 cut(s) 172, 249, 398
Lsp1109I GCAGC 3 cut(s) 549, 625, 745
LweI GCATC 3 cut(s) 532, 634, 792
MaeI CTAG 2 cut(s) 44, 755
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 2 cut(s) 226, 802
MboII GAAGA 5 cut(s) 26, 29, 171, 331, 776
MflI RGATCY 2 cut(s) 483, 741
MhlI GDGCHC 2 cut(s) 202, 713
MluCI AATT 4 cut(s) 583, 703, 723, 814
MlyI GAGTC 2 cut(s) 278, 496
MmeI TCCRAC 1 cut(s) 699
Mph1103I ATGCAT 1 cut(s) 785
MroNI GCCGGC 1 cut(s) 232
MseI TTAA 2 cut(s) 123, 798
MslI CAYNNNNRTG 1 cut(s) 185
MspI CCGG 2 cut(s) 233, 416
MspR9I CCNGG 2 cut(s) 196, 203
MvaI CCWGG 2 cut(s) 196, 203
MwoI GCNNNNNNNGC 6 cut(s) 197, 343, 399, 408, 586, 622
NaeI GCCGGC 1 cut(s) 234
NcoI CCATGG 1 cut(s) 186
NdeI CATATG 1 cut(s) 398
NgoMIV GCCGGC 1 cut(s) 232
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 4 cut(s) 184, 190, 328, 697
NlaIV GGNNCC 2 cut(s) 200, 485
NmuCI GTSAC 1 cut(s) 226
NsiI ATGCAT 1 cut(s) 785
PceI AGGCCT 1 cut(s) 521
PdiI GCCGGC 1 cut(s) 234
PfeI GAWTC 3 cut(s) 20, 97, 213
PkrI GCNGC 4 cut(s) 385, 564, 615, 760
PleI GAGTC 2 cut(s) 277, 496
PpsI GAGTC 2 cut(s) 277, 496
Ppu21I YACGTR 1 cut(s) 358
Psp6I CCWGG 2 cut(s) 194, 201
PspGI CCWGG 2 cut(s) 194, 201
PspN4I GGNNCC 2 cut(s) 200, 485
PspOMI GGGCCC 1 cut(s) 198
PspPI GGNCC 3 cut(s) 198, 199, 235
PstNI CAGNNNCTG 1 cut(s) 100
PsuI RGATCY 2 cut(s) 483, 741
RsaI GTAC 2 cut(s) 356, 479
RsaNI GTAC 2 cut(s) 355, 478
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 2 cut(s) 123, 798
SatI GCNGC 4 cut(s) 384, 563, 614, 759
Sau96I GGNCC 3 cut(s) 198, 199, 235
SchI GAGTC 2 cut(s) 278, 496
ScrFI CCNGG 2 cut(s) 196, 203
SduI GDGCHC 2 cut(s) 202, 713
SfaNI GCATC 3 cut(s) 532, 634, 792
SfcI CTRYAG 1 cut(s) 654
SfiI GGCCNNNNNGGCC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 4 cut(s) 58, 154, 338, 377
SmoI CTYRAG 4 cut(s) 58, 154, 338, 377
Sse9I AATT 4 cut(s) 583, 703, 723, 814
SseBI AGGCCT 1 cut(s) 521
SsiI CCGC 2 cut(s) 383, 739
SspMI CTAG 2 cut(s) 44, 755
StuI AGGCCT 1 cut(s) 521
StyD4I CCNGG 2 cut(s) 194, 201
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 2 cut(s) 177, 365
TaiI ACGT 1 cut(s) 360
TaqI TCGA 4 cut(s) 249, 291, 302, 786
TasI AATT 4 cut(s) 583, 703, 723, 814
TatI WGTACW 1 cut(s) 477
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 3 cut(s) 20, 97, 213
Tru1I TTAA 2 cut(s) 123, 798
Tru9I TTAA 2 cut(s) 123, 798
TscAI CASTG 1 cut(s) 718
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 3 cut(s) 562, 613, 758
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 3 cut(s) 27, 341, 684
TspRI CASTG 1 cut(s) 718
XapI RAATTY 1 cut(s) 583
XspI CTAG 2 cut(s) 44, 755
Zsp2I ATGCAT 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.