Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007837

Physical Location & Seq

Genomic Coordinates Reverse (-)

47959514 .. 47965158

Gene Structure 5645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG284800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGATATATATATGCATCGTTGTACTACCATTTGCAGCAAGGTCAATTTTGATGAGTTTTCCATTTGCTTCTTCAAAACTATCGAAAACACGAATGACCAAGCCTTCTTCAACATCCCTTGCACCTGCACCTGCACCTTCTCCAGTTCATCTAGCTCCCAGCAGTTTGCCTTCACCACCACTCCGTCATCATCATCATCATCATCATCGTGGGAAAGGCAGACCCCATGCTGTTGCTCCTGCCCCGTCAAAAGACCCAGGTTGTGATCAACTTTGTGTGGAGCCACTTACTGCATCTCCATTTGGTTCACCTTGTGGTTGTGTATTTCCCATGAAAGTCAGACTTTTACTGGATATAGCTCCTTATTCTATTTTTCCAGTAATGAGTGAGTTGGAGATTGAGGTTGCTGAGGGCACGTATTTGGCACAAAGCCAAGTAATAATAATGGGTGCAAGTGCTGATAGTCAAAATCAAGGGAGAACAGTAGTGGATATTAACTTGGTTCCTTTAGGAGAGAAGTTTGATAATACCACTGCGATACTGACATATGACAGATTCAAGCATAAGAAAGTGCCTCTCAATCTAACTCTTTTTGGCAATTATGAAGTGTTGTACATTAGTTACCCAGGGATAACTTCTTCACCACCATATTTGAAGGGGAATGGACCAACCGGAAGTCCTCAAAACCTCCCTATCACTGCAGAGTTTCCCAGAAAGAACCAGAGAATGAATATAAGAACCATTGCCATTATTGCCCTCTCTGCCTTTGTACTCGTACTGGTTATTCTTGGAGCAATCTTGGTGTTCATAAAATGGAGGAAAGTTGGAAGACCATCTAGTGCTGTCGGTCCTGCACGTGAATCATCTATTCATAAAAGATCTGGCTTTGGGTCTATGATATCAAGTAGCATTGCAAGCTCCACTTCAGTATCCCTAATGTCCACTATGGCTACCAGTATTCTCTCTGTTAAAACATTCCCACGTTCCGAGATTGAGAAAGCAACAAATAAGTTCAGTTCTCAAAGGGTTCTAGGAGAAGGAGGATTTGGACGTGTTTACCATGGAATTATGGAGGATGGAAGTGAAGTTGCAGTCAAAGTGCTTACAAGGGATAACAACCAAAATGGAGACCGTGAATTCATTGCAGAAGTTGAGATGTTAAGCCGATTACATCACCGTAATCTTGTGAAACTGATTGGTATATGTATTGAAGGGCACGCACGCAGCTTGGTGTATGAGCTTATTCGCAATGGCAGTGTTGAGTCTCATTTGCATGGTGTTGACAAGAAAAAGGGCCCTCTTGACTGGGACGCACGGATGAAGATTGCCCTTGGGGCAGCAAGAGGATTAGCCTATCTTCATGAAGATTCTAATCCCCGTGTTATTCACCGAGATTTTAAGGCTAGTAATGTTTTGCTGGAAGATGACTTCACTCCCAAGGTTTCTGATTTTGGGTTGGCTAGGGAAGCAACTGAAGGAAGTCATCACATCTCTACAAGGGTCATGGGAACTTTCGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

506

Amino Acids

55.16

Weight (kDa)

9.47

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALE2_N	PF23180	94 - 211	2.8e-54	Receptor-like PK ALE2 N-terminal domain
Pkinase	PF00069	339 - 504	3.8e-32	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	341 - 495	1.9e-35	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20300
fragaria_vesca	FvH4_2g20190 FvH4_2g20190 FvH4_2g20190 FvH4_2g20190 FvH4_2g20190 FvH4_2g20190
malus_domestica	MD05G1185400.v1.1 MD10G1173600.v1.1
prunus_persica	Prupe.8G212200_v2.0.a1 Prupe.8G212200_v2.0.a1
pyrus_communis	pycom05g17020 pycom10g14970
rosa_chinensis	RchiOBHm_Chr6g0285961
rosa_laevigata	RLG00000012594
rosa_multiflora	Rmu_sc0004808.1_g000010 Rmu_sc0005513.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182570
rosa_rugosa	Rorug06G0177700
rosa_samantha	Rh6AG289800 Rh6BG291700 Rh6CG292700 Rh6DG284800
rosa_wichuraiana	Rw6G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	133, 139
Acc36I	ACCTGC	2 cut(s)	133, 139
AcsI	RAATTY	1 cut(s)	1136
AcuI	CTGAAG	2 cut(s)	909, 1494
AcvI	CACGTG	1 cut(s)	857
AdeI	CACNNNGTG	1 cut(s)	314
AfaI	GTAC	4 cut(s)	24, 614, 771, 777
AflIII	ACRYGT	1 cut(s)	1051
AgsI	TTSAA	5 cut(s)	75, 111, 559, 655, 1211
AjiI	CACGTC	1 cut(s)	1052
AjnI	CCWGG	2 cut(s)	256, 625
AjuI	GAANNNNNNNTTGG	2 cut(s)	1029, 1061
AluBI	AGCT	5 cut(s)	155, 359, 918, 1227, 1240
AluI	AGCT	5 cut(s)	155, 359, 918, 1227, 1240
Alw26I	GTCTC	2 cut(s)	1122, 1269
AoxI	GGCC	1 cut(s)	1294
ApaI	GGGCCC	1 cut(s)	1298
ApeKI	GCWGC	3 cut(s)	35, 1224, 1337
ApoI	RAATTY	1 cut(s)	1136
AspS9I	GGNCC	4 cut(s)	665, 848, 1294, 1295
AsuHPI	GGTGA	5 cut(s)	165, 300, 633, 1166, 1379
AvaII	GGWCC	2 cut(s)	665, 848
BaeGI	GKGCMC	3 cut(s)	416, 1218, 1298
BaeI	ACNNNNGTAYC	2 cut(s)	912, 945
BanII	GRGCYC	1 cut(s)	1298
BbrPI	CACGTG	1 cut(s)	857
BbsI	GAAGAC	1 cut(s)	835
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	3 cut(s)	47, 1236, 1349
BccI	CCATC	2 cut(s)	841, 1070
BciT130I	CCWGG	2 cut(s)	258, 627
BciVI	GTATCC	1 cut(s)	940
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	2 cut(s)	1122, 1269
BfaI	CTAG	5 cut(s)	152, 837, 1031, 1404, 1461
BfmI	CTRYAG	1 cut(s)	699
BfuAI	ACCTGC	2 cut(s)	133, 139
BfuI	GTATCC	1 cut(s)	940
BglI	GCCNNNNNGGC	1 cut(s)	1334
BglII	AGATCT	1 cut(s)	878
BisI	GCNGC	3 cut(s)	36, 1225, 1338
BlsI	GCNGC	3 cut(s)	37, 1226, 1339
Bme1390I	CCNGG	2 cut(s)	258, 627
Bme18I	GGWCC	2 cut(s)	665, 848
BmgBI	CACGTC	1 cut(s)	1052
BmgT120I	GGNCC	4 cut(s)	665, 848, 1294, 1295
BmiI	GGNNCC	3 cut(s)	282, 504, 1296
BmrFI	CCNGG	2 cut(s)	258, 627
BmrI	ACTGGG	1 cut(s)	1315
BmsI	GCATC	2 cut(s)	24, 302
BmuI	ACTGGG	1 cut(s)	1315
BpiI	GAAGAC	1 cut(s)	835
BpmI	CTGGAG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	408
BsaAI	YACGTR	2 cut(s)	417, 857
BsaBI	GATNNNNATC	1 cut(s)	1371
BsaI	GGTCTC	1 cut(s)	1122
BsaJI	CCNNGG	6 cut(s)	256, 625, 626, 1060, 1330, 1437
BsaWI	WCCGGW	1 cut(s)	671
BsaXI	ACNNNNNCTCC	4 cut(s)	165, 195, 280, 310
Bse1I	ACTGG	6 cut(s)	143, 354, 377, 783, 954, 1310
Bse3DI	GCAATG	4 cut(s)	741, 909, 1140, 1255
Bse8I	GATNNNNATC	1 cut(s)	1371
BseBI	CCWGG	2 cut(s)	258, 627
BseDI	CCNNGG	6 cut(s)	256, 625, 626, 1060, 1330, 1437
BseGI	GGATG	3 cut(s)	113, 1081, 1323
BseJI	GATNNNNATC	1 cut(s)	1371
BseMI	GCAATG	4 cut(s)	741, 909, 1140, 1255
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	6 cut(s)	143, 354, 377, 783, 954, 1310
BseSI	GKGCMC	3 cut(s)	416, 1218, 1298
BseXI	GCAGC	3 cut(s)	47, 1236, 1349
BseYI	CCCAGC	1 cut(s)	158
BsgI	GTGCAG	3 cut(s)	111, 117, 837
BshFI	GGCC	1 cut(s)	1296
BsiSI	CCGG	1 cut(s)	672
BslFI	GGGAC	1 cut(s)	1322
BsmAI	GTCTC	2 cut(s)	1122, 1269
BsmFI	GGGAC	1 cut(s)	1322
BsnI	GGCC	1 cut(s)	1296
Bso31I	GGTCTC	1 cut(s)	1122
Bsp120I	GGGCCC	1 cut(s)	1294
Bsp1286I	GDGCHC	3 cut(s)	416, 1218, 1298
Bsp1407I	TGTACA	1 cut(s)	612
Bsp143I	GATC	2 cut(s)	265, 878
Bsp19I	CCATGG	1 cut(s)	1060
BspANI	GGCC	1 cut(s)	1296
BspCNI	CTCAG	1 cut(s)	400
BspHI	TCATGA	1 cut(s)	1360
BspLI	GGNNCC	3 cut(s)	282, 504, 1296
BspMAI	CTGCAG	1 cut(s)	703
BspMI	ACCTGC	2 cut(s)	133, 139
BspTNI	GGTCTC	1 cut(s)	1122
BsrDI	GCAATG	4 cut(s)	741, 909, 1140, 1255
BsrGI	TGTACA	1 cut(s)	612
BsrI	ACTGG	6 cut(s)	143, 354, 377, 783, 954, 1310
BssECI	CCNNGG	6 cut(s)	256, 625, 626, 1060, 1330, 1437
BssMI	GATC	2 cut(s)	265, 878
BssT1I	CCWWGG	3 cut(s)	1060, 1330, 1437
Bst2UI	CCWGG	2 cut(s)	258, 627
Bst4CI	ACNGT	3 cut(s)	484, 1133, 1178
BstAUI	TGTACA	1 cut(s)	612
BstBAI	YACGTR	2 cut(s)	417, 857
BstC8I	GCNNGC	3 cut(s)	916, 1218, 1222
BstDEI	CTNAG	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	1060
BstF5I	GGATG	3 cut(s)	113, 1081, 1323
BstKTI	GATC	2 cut(s)	268, 881
BstMAI	GTCTC	2 cut(s)	1122, 1269
BstMBI	GATC	2 cut(s)	265, 878
BstMWI	GCNNNNNNNGC	5 cut(s)	752, 761, 915, 1334, 1466
BstNI	CCWGG	2 cut(s)	258, 627
BstSCI	CCNGG	2 cut(s)	256, 625
BstSFI	CTRYAG	1 cut(s)	699
BstSLI	GKGCMC	3 cut(s)	416, 1218, 1298
BstV1I	GCAGC	3 cut(s)	47, 1236, 1349
BstV2I	GAAGAC	1 cut(s)	835
BstX2I	RGATCY	1 cut(s)	878
BstYI	RGATCY	1 cut(s)	878
BsuI	GTATCC	1 cut(s)	940
BsuRI	GGCC	1 cut(s)	1296
BtgI	CCRYGG	1 cut(s)	1060
BtrI	CACGTC	1 cut(s)	1052
BtsCI	GGATG	3 cut(s)	113, 1081, 1323
BtsI	GCAGTG	3 cut(s)	531, 696, 1261
BtsIMutI	CAGTG	3 cut(s)	531, 696, 1261
BveI	ACCTGC	2 cut(s)	133, 139
Cac8I	GCNNGC	3 cut(s)	916, 1218, 1222
CciI	TCATGA	1 cut(s)	1360
Cfr13I	GGNCC	4 cut(s)	665, 848, 1294, 1295
CseI	GACGC	1 cut(s)	1319
Csp6I	GTAC	4 cut(s)	23, 613, 770, 776
CspCI	CAANNNNNGTGG	2 cut(s)	633, 668
CviAII	CATG	6 cut(s)	227, 331, 1061, 1274, 1361, 1504
CviQI	GTAC	4 cut(s)	23, 613, 770, 776
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	2 cut(s)	267, 880
DpnII	GATC	2 cut(s)	265, 878
DraIII	CACNNNGTG	1 cut(s)	314
Eco130I	CCWWGG	3 cut(s)	1060, 1330, 1437
Eco24I	GRGCYC	1 cut(s)	1298
Eco31I	GGTCTC	1 cut(s)	1122
Eco32I	GATATC	1 cut(s)	900
Eco47I	GGWCC	2 cut(s)	665, 848
Eco57I	CTGAAG	2 cut(s)	909, 1494
Eco72I	CACGTG	1 cut(s)	857
EcoO109I	RGGNCCY	2 cut(s)	1294, 1295
EcoRI	GAATTC	1 cut(s)	1136
EcoRII	CCWGG	2 cut(s)	256, 625
EcoRV	GATATC	1 cut(s)	900
EcoT14I	CCWWGG	3 cut(s)	1060, 1330, 1437
EcoT22I	ATGCAT	1 cut(s)	17
EcoT38I	GRGCYC	1 cut(s)	1298
ErhI	CCWWGG	3 cut(s)	1060, 1330, 1437
FaeI	CATG	6 cut(s)	230, 334, 1064, 1277, 1364, 1507
FalI	AAGNNNNNCTT	4 cut(s)	327, 359, 907, 939
FaqI	GGGAC	1 cut(s)	1322
FatI	CATG	6 cut(s)	226, 330, 1060, 1273, 1360, 1503
FauNDI	CATATG	1 cut(s)	547
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	3 cut(s)	36, 1225, 1338
FokI	GGATG	3 cut(s)	100, 1088, 1330
FriOI	GRGCYC	1 cut(s)	1298
Fsp4HI	GCNGC	3 cut(s)	36, 1225, 1338
FspBI	CTAG	5 cut(s)	152, 837, 1031, 1404, 1461
GluI	GCNGC	3 cut(s)	36, 1225, 1338
GsaI	CCCAGC	1 cut(s)	162
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	1296
HapII	CCGG	1 cut(s)	672
HgaI	GACGC	1 cut(s)	1319
Hin1II	CATG	6 cut(s)	230, 334, 1064, 1277, 1364, 1507
HincII	GTYRAC	1 cut(s)	1282
HindII	GTYRAC	1 cut(s)	1282
HinfI	GANTC	4 cut(s)	555, 860, 1262, 1367
HpaII	CCGG	1 cut(s)	672
HphI	GGTGA	5 cut(s)	165, 300, 633, 1166, 1379
Hpy166II	GTNNAC	4 cut(s)	308, 942, 1057, 1282
Hpy188I	TCNGA	3 cut(s)	341, 988, 1447
Hpy188III	TCNNGA	2 cut(s)	1301, 1361
Hpy8I	GTNNAC	4 cut(s)	308, 942, 1057, 1282
HpyAV	CCTTC	7 cut(s)	114, 147, 180, 649, 1031, 1205, 1469
HpyCH4III	ACNGT	3 cut(s)	484, 1133, 1178
HpyCH4IV	ACGT	4 cut(s)	416, 856, 982, 1051
HpyF10VI	GCNNNNNNNGC	5 cut(s)	752, 761, 915, 1334, 1466
HpyF3I	CTNAG	1 cut(s)	408
HpySE526I	ACGT	4 cut(s)	416, 856, 982, 1051
Hsp92II	CATG	6 cut(s)	230, 334, 1064, 1277, 1364, 1507
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	265, 878
LmnI	GCTCC	6 cut(s)	160, 241, 280, 364, 791, 923
Lsp1109I	GCAGC	3 cut(s)	47, 1236, 1349
LweI	GCATC	2 cut(s)	24, 302
MaeI	CTAG	5 cut(s)	152, 837, 1031, 1404, 1461
MaeII	ACGT	4 cut(s)	416, 856, 982, 1051
MaeIII	GTNAC	1 cut(s)	620
MalI	GATC	2 cut(s)	267, 880
MboI	GATC	2 cut(s)	265, 878
MboII	GAAGA	8 cut(s)	63, 99, 630, 840, 1333, 1349, 1376, 1433
MflI	RGATCY	1 cut(s)	878
MhlI	GDGCHC	3 cut(s)	416, 1218, 1298
MluCI	AATT	4 cut(s)	45, 598, 1065, 1136
MlyI	GAGTC	1 cut(s)	1271
MmeI	TCCRAC	2 cut(s)	372, 805
Mph1103I	ATGCAT	1 cut(s)	17
MseI	TTAA	4 cut(s)	495, 969, 1160, 1398
MslI	CAYNNNNRTG	2 cut(s)	207, 1272
MspI	CCGG	1 cut(s)	672
MspR9I	CCNGG	2 cut(s)	258, 627
MvaI	CCWGG	2 cut(s)	258, 627
MwoI	GCNNNNNNNGC	5 cut(s)	752, 761, 915, 1334, 1466
NcoI	CCATGG	1 cut(s)	1060
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	2 cut(s)	265, 878
NlaIII	CATG	6 cut(s)	230, 334, 1064, 1277, 1364, 1507
NlaIV	GGNNCC	3 cut(s)	282, 504, 1296
NsiI	ATGCAT	1 cut(s)	17
PagI	TCATGA	1 cut(s)	1360
PaqCI	CACCTGC	2 cut(s)	133, 139
PasI	CCCWGGG	1 cut(s)	626
PfeI	GAWTC	3 cut(s)	555, 860, 1367
PkrI	GCNGC	3 cut(s)	37, 1226, 1339
PleI	GAGTC	1 cut(s)	1270
PmaCI	CACGTG	1 cut(s)	857
PmlI	CACGTG	1 cut(s)	857
PpsI	GAGTC	1 cut(s)	1270
Ppu21I	YACGTR	2 cut(s)	417, 857
Psp6I	CCWGG	2 cut(s)	256, 625
PspCI	CACGTG	1 cut(s)	857
PspFI	CCCAGC	1 cut(s)	158
PspGI	CCWGG	2 cut(s)	256, 625
PspN4I	GGNNCC	3 cut(s)	282, 504, 1296
PspOMI	GGGCCC	1 cut(s)	1294
PspPI	GGNCC	4 cut(s)	665, 848, 1294, 1295
PstI	CTGCAG	1 cut(s)	703
PsuI	RGATCY	1 cut(s)	878
RsaI	GTAC	4 cut(s)	24, 614, 771, 777
RsaNI	GTAC	4 cut(s)	23, 613, 770, 776
RseI	CAYNNNNRTG	2 cut(s)	207, 1272
SaqAI	TTAA	4 cut(s)	495, 969, 1160, 1398
SatI	GCNGC	3 cut(s)	36, 1225, 1338
Sau3AI	GATC	2 cut(s)	265, 878
Sau96I	GGNCC	4 cut(s)	665, 848, 1294, 1295
SchI	GAGTC	1 cut(s)	1271
ScrFI	CCNGG	2 cut(s)	258, 627
SduI	GDGCHC	3 cut(s)	416, 1218, 1298
SfaNI	GCATC	2 cut(s)	24, 302
SfcI	CTRYAG	1 cut(s)	699
SinI	GGWCC	2 cut(s)	665, 848
SmiMI	CAYNNNNRTG	2 cut(s)	207, 1272
Sse9I	AATT	4 cut(s)	45, 598, 1065, 1136
SspMI	CTAG	5 cut(s)	152, 837, 1031, 1404, 1461
StyD4I	CCNGG	2 cut(s)	256, 625
StyI	CCWWGG	3 cut(s)	1060, 1330, 1437
TaaI	ACNGT	3 cut(s)	484, 1133, 1178
TaiI	ACGT	4 cut(s)	419, 859, 985, 1054
TaqI	TCGA	1 cut(s)	83
TaqII	GACCGA	1 cut(s)	836
TasI	AATT	4 cut(s)	45, 598, 1065, 1136
TatI	WGTACW	3 cut(s)	22, 612, 769
TfiI	GAWTC	3 cut(s)	555, 860, 1367
Tru1I	TTAA	4 cut(s)	495, 969, 1160, 1398
Tru9I	TTAA	4 cut(s)	495, 969, 1160, 1398
TscAI	CASTG	3 cut(s)	538, 703, 1261
TseI	GCWGC	3 cut(s)	35, 1224, 1337
TspGWI	ACGGA	2 cut(s)	173, 1330
TspRI	CASTG	3 cut(s)	538, 703, 1261
VpaK11BI	GGWCC	2 cut(s)	665, 848
XapI	RAATTY	1 cut(s)	1136
XspI	CTAG	5 cut(s)	152, 837, 1031, 1404, 1461
Zsp2I	ATGCAT	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.