Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0007837

Physical Location & Seq

Genomic Coordinates Reverse (-)

48201487 .. 48203022

Gene Structure 1536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G024970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTTAAGCCGATTACATCACCGTAATCTTGTGAAACTGATTGGTATATGTATTGAAGGGCACGCACGCAGCTTGGTGTATGAGCTTATTCGCAATGGCAGTGTTGAGTCTCATTTGCATGGTGTTGACAAGAAAAAGGGCCCTCTTGACTGGGACGCACGGATGAAGATTGCCCTTGGGGCAGCAAGAGGATTGGCCTATCTTCATGAAGATTCTAATCCCCGTGTTATTCACCGAGATTTTAAGGCTAGTAATGTTTTGCTGGAAGATGACTTCACTCCCAAGGTTTCTGATTTTGGGTTGGCTAGGGAAGCAACTGAAGGAAGTCATCACATCTCTACAAGGGTCATGGGAACTTTCGGGTATGTTGCCCCAGAATATGCGATGACAGGGCACTTACTCGTCAAGAGCGATGTTTATAGTTATGGAGTTGTGCTGCTGGAACTTCTCTCTGGAAGGAAACCTGTTGACATGTCCCACCCTCAGGGGCAGGAGAATTTGGTCACGTGGGCAAGACCGCTGCTAACCAGCAGAGAGGGTTTGCAGCAGTTGGTGGATCCTGCCTTAGCCGGAACTTATGACTTCGATGACATGGCTAAAGTGGCAGCCATTGCTTCCATGTGCGTTCATCCTGAGGTCACTCACAGGCCTTTTATGGGTGAGGTTGTGCAGGCTCTAAAGCTGATATACAATGACACGGATGAGACTGGTGGGGACTGCCATAGTCAAAAGGAGTCTTCTGTCCCGGACTCCTTTAAATGTGATCTTGCCCCTTCTGATAGCAGTTGGTGGAACGCTGGTGGACTCACTCCCCGGTTAAATTACGGGCAAGCCTCTTCATTCATTACAATGGAGTATAGCTCAGGGACTCTTGAAGACATGGAAAACAGACCGTTTTCAGTTTCAAGTTTGTTCGGGAATGGGGTATCTTTACCAATTAGACATGGCAATAGATCAGGGCCATTGAGAACCATCCGTAGCAAGCCGTCTTTCTACAGAGCAAGAGGAAGTATGAGTGAGCATGGAGGTCTGCTTGGAAAGCGTGCTTGGAACGATGGATTCTGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

356

Amino Acids

39.34

Weight (kDa)

6.6

Isoelectric Point (pI)

32.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 225	1.1e-34	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	1 - 167	4e-33	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20300
fragaria_vesca	FvH4_2g20190 FvH4_2g20190 FvH4_2g20190 FvH4_2g20190 FvH4_2g20190 FvH4_2g20190
malus_domestica	MD05G1185400.v1.1 MD10G1173600.v1.1
prunus_persica	Prupe.8G212200_v2.0.a1 Prupe.8G212200_v2.0.a1
pyrus_communis	pycom05g17020 pycom10g14970
rosa_chinensis	RchiOBHm_Chr6g0285961
rosa_laevigata	RLG00000012594
rosa_multiflora	Rmu_sc0004808.1_g000010 Rmu_sc0005513.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182570
rosa_rugosa	Rorug06G0177700
rosa_samantha	Rh6AG289800 Rh6BG291700 Rh6CG292700 Rh6DG284800
rosa_wichuraiana	Rw6G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	518
AclWI	GGATC	2 cut(s)	551, 564
AcsI	RAATTY	1 cut(s)	496
AcuI	CTGAAG	1 cut(s)	339
AcvI	CACGTG	1 cut(s)	507
AfiI	CCNNNNNNNGG	2 cut(s)	484, 656
AflIII	ACRYGT	1 cut(s)	471
AgsI	TTSAA	3 cut(s)	56, 875, 906
AjuI	GAANNNNNNNTTGG	2 cut(s)	1030, 1062
AluBI	AGCT	4 cut(s)	72, 85, 682, 861
AluI	AGCT	4 cut(s)	72, 85, 682, 861
Alw26I	GTCTC	2 cut(s)	114, 698
AlwI	GGATC	2 cut(s)	551, 564
AoxI	GGCC	4 cut(s)	139, 195, 647, 959
ApaI	GGGCCC	1 cut(s)	143
ApeKI	GCWGC	6 cut(s)	69, 182, 436, 520, 544, 605
ApoI	RAATTY	1 cut(s)	496
AspS9I	GGNCC	3 cut(s)	139, 140, 959
AsuC2I	CCSGG	2 cut(s)	746, 814
AsuHPI	GGTGA	3 cut(s)	11, 224, 671
AxyI	CCTNAGG	2 cut(s)	483, 633
BaeGI	GKGCMC	3 cut(s)	63, 143, 396
BamHI	GGATCC	1 cut(s)	556
BanII	GRGCYC	1 cut(s)	143
BbrPI	CACGTG	1 cut(s)	507
BbsI	GAAGAC	2 cut(s)	729, 882
BbvI	GCAGC	6 cut(s)	81, 194, 423, 507, 556, 617
BccI	CCATC	2 cut(s)	980, 1049
BceAI	ACGGC	1 cut(s)	970
BcnI	CCSGG	2 cut(s)	746, 814
BcoDI	GTCTC	2 cut(s)	114, 698
BfaI	CTAG	2 cut(s)	249, 306
BfmI	CTRYAG	1 cut(s)	994
BglI	GCCNNNNNGGC	1 cut(s)	179
BisI	GCNGC	6 cut(s)	70, 183, 437, 521, 545, 606
BlsI	GCNGC	6 cut(s)	71, 184, 438, 522, 546, 607
Bme1390I	CCNGG	2 cut(s)	746, 814
BmgT120I	GGNCC	3 cut(s)	139, 140, 959
BmiI	GGNNCC	2 cut(s)	141, 558
BmrFI	CCNGG	2 cut(s)	746, 814
BmrI	ACTGGG	1 cut(s)	160
BmuI	ACTGGG	1 cut(s)	160
BpiI	GAAGAC	2 cut(s)	729, 882
BplI	GAGNNNNNCTC	2 cut(s)	845, 877
Bpu10I	CCTNAGC	2 cut(s)	565, 862
BpuMI	CCSGG	2 cut(s)	746, 814
BsaAI	YACGTR	1 cut(s)	507
BsaBI	GATNNNNATC	1 cut(s)	216
BsaJI	CCNNGG	3 cut(s)	175, 282, 812
Bsc4I	CCNNNNNNNGG	2 cut(s)	484, 656
Bse1I	ACTGG	2 cut(s)	155, 712
Bse21I	CCTNAGG	2 cut(s)	483, 633
Bse3DI	GCAATG	2 cut(s)	100, 609
Bse8I	GATNNNNATC	1 cut(s)	216
BseDI	CCNNGG	3 cut(s)	175, 282, 812
BseGI	GGATG	4 cut(s)	168, 628, 706, 972
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	2 cut(s)	484, 656
BseMI	GCAATG	2 cut(s)	100, 609
BseMII	CTCAG	3 cut(s)	497, 624, 876
BseNI	ACTGG	2 cut(s)	155, 712
BseSI	GKGCMC	3 cut(s)	63, 143, 396
BseXI	GCAGC	6 cut(s)	81, 194, 423, 507, 556, 617
BsgI	GTGCAG	1 cut(s)	689
BshFI	GGCC	4 cut(s)	141, 197, 649, 961
BsiSI	CCGG	3 cut(s)	570, 746, 814
BslFI	GGGAC	5 cut(s)	167, 460, 728, 728, 880
BslI	CCNNNNNNNGG	2 cut(s)	484, 656
BsmAI	GTCTC	2 cut(s)	114, 698
BsmFI	GGGAC	5 cut(s)	167, 460, 728, 728, 880
BsnI	GGCC	4 cut(s)	141, 197, 649, 961
Bsp120I	GGGCCC	1 cut(s)	139
Bsp1286I	GDGCHC	3 cut(s)	63, 143, 396
Bsp143I	GATC	3 cut(s)	556, 763, 953
BspACI	CCGC	1 cut(s)	518
BspANI	GGCC	4 cut(s)	141, 197, 649, 961
BspCNI	CTCAG	3 cut(s)	496, 625, 875
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	141, 558
BspPI	GGATC	2 cut(s)	551, 564
BsrDI	GCAATG	2 cut(s)	100, 609
BsrI	ACTGG	2 cut(s)	155, 712
BssECI	CCNNGG	3 cut(s)	175, 282, 812
BssMI	GATC	3 cut(s)	556, 763, 953
BssT1I	CCWWGG	2 cut(s)	175, 282
Bst4CI	ACNGT	2 cut(s)	23, 894
Bst6I	CTCTTC	1 cut(s)	841
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstBAI	YACGTR	1 cut(s)	507
BstC8I	GCNNGC	6 cut(s)	63, 67, 672, 831, 983, 1044
BstDEI	CTNAG	4 cut(s)	483, 565, 633, 862
BstF5I	GGATG	4 cut(s)	168, 628, 706, 972
BstKTI	GATC	3 cut(s)	559, 766, 956
BstMAI	GTCTC	2 cut(s)	114, 698
BstMBI	GATC	3 cut(s)	556, 763, 953
BstMWI	GCNNNNNNNGC	5 cut(s)	179, 311, 602, 611, 1039
BstNSI	RCATGY	1 cut(s)	475
BstSCI	CCNGG	2 cut(s)	744, 812
BstSFI	CTRYAG	1 cut(s)	994
BstSLI	GKGCMC	3 cut(s)	63, 143, 396
BstV1I	GCAGC	6 cut(s)	81, 194, 423, 507, 556, 617
BstV2I	GAAGAC	2 cut(s)	729, 882
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
Bsu36I	CCTNAGG	2 cut(s)	483, 633
BsuRI	GGCC	4 cut(s)	141, 197, 649, 961
BtgZI	GCGATG	2 cut(s)	398, 426
BtsCI	GGATG	4 cut(s)	168, 628, 706, 972
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	106
Cac8I	GCNNGC	6 cut(s)	63, 67, 672, 831, 983, 1044
CciI	TCATGA	1 cut(s)	205
Cfr13I	GGNCC	3 cut(s)	139, 140, 959
CseI	GACGC	1 cut(s)	164
CviAII	CATG	9 cut(s)	119, 206, 349, 472, 592, 619, 880, 944, 1022
DdeI	CTNAG	4 cut(s)	483, 565, 633, 862
DpnI	GATC	3 cut(s)	558, 765, 955
DpnII	GATC	3 cut(s)	556, 763, 953
DraI	TTTAAA	1 cut(s)	757
Eam1104I	CTCTTC	1 cut(s)	841
EarI	CTCTTC	1 cut(s)	841
Eco130I	CCWWGG	2 cut(s)	175, 282
Eco147I	AGGCCT	1 cut(s)	649
Eco24I	GRGCYC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	339
Eco72I	CACGTG	1 cut(s)	507
Eco81I	CCTNAGG	2 cut(s)	483, 633
EcoO109I	RGGNCCY	2 cut(s)	139, 140
EcoT14I	CCWWGG	2 cut(s)	175, 282
EcoT38I	GRGCYC	1 cut(s)	143
ErhI	CCWWGG	2 cut(s)	175, 282
FaeI	CATG	9 cut(s)	122, 209, 352, 475, 595, 622, 883, 947, 1025
FaqI	GGGAC	5 cut(s)	167, 460, 728, 728, 880
FatI	CATG	9 cut(s)	118, 205, 348, 471, 591, 618, 879, 943, 1021
Fnu4HI	GCNGC	6 cut(s)	70, 183, 437, 521, 545, 606
FokI	GGATG	4 cut(s)	175, 615, 713, 959
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	6 cut(s)	70, 183, 437, 521, 545, 606
FspBI	CTAG	2 cut(s)	249, 306
GluI	GCNGC	6 cut(s)	70, 183, 437, 521, 545, 606
HaeIII	GGCC	4 cut(s)	141, 197, 649, 961
HapII	CCGG	3 cut(s)	570, 746, 814
HgaI	GACGC	1 cut(s)	164
Hin1II	CATG	9 cut(s)	122, 209, 352, 475, 595, 622, 883, 947, 1025
HincII	GTYRAC	2 cut(s)	127, 469
HindII	GTYRAC	2 cut(s)	127, 469
HinfI	GANTC	7 cut(s)	107, 212, 734, 749, 804, 868, 1059
HpaII	CCGG	3 cut(s)	570, 746, 814
HphI	GGTGA	3 cut(s)	11, 224, 671
Hpy166II	GTNNAC	3 cut(s)	127, 469, 803
Hpy188I	TCNGA	2 cut(s)	292, 778
Hpy188III	TCNNGA	7 cut(s)	146, 206, 406, 453, 632, 872, 916
Hpy8I	GTNNAC	3 cut(s)	127, 469, 803
HpyAV	CCTTC	4 cut(s)	50, 314, 450, 783
HpyCH4III	ACNGT	2 cut(s)	23, 894
HpyCH4IV	ACGT	1 cut(s)	506
HpyCH4V	TGCA	3 cut(s)	118, 544, 670
HpyF10VI	GCNNNNNNNGC	5 cut(s)	179, 311, 602, 611, 1039
HpyF3I	CTNAG	4 cut(s)	483, 565, 633, 862
HpySE526I	ACGT	1 cut(s)	506
Hsp92II	CATG	9 cut(s)	122, 209, 352, 475, 595, 622, 883, 947, 1025
Kzo9I	GATC	3 cut(s)	556, 763, 953
Lsp1109I	GCAGC	6 cut(s)	81, 194, 423, 507, 556, 617
MaeI	CTAG	2 cut(s)	249, 306
MaeII	ACGT	1 cut(s)	506
MaeIII	GTNAC	2 cut(s)	502, 637
MalI	GATC	3 cut(s)	558, 765, 955
MboI	GATC	3 cut(s)	556, 763, 953
MboII	GAAGA	7 cut(s)	178, 194, 221, 278, 729, 828, 887
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	3 cut(s)	63, 143, 396
MluCI	AATT	3 cut(s)	496, 820, 936
MlyI	GAGTC	5 cut(s)	116, 743, 743, 798, 862
MnlI	CCTC	9 cut(s)	153, 182, 492, 529, 628, 655, 844, 998, 1019
MseI	TTAA	4 cut(s)	5, 243, 756, 818
MslI	CAYNNNNRTG	2 cut(s)	117, 848
MspA1I	CMGCKG	1 cut(s)	520
MspI	CCGG	3 cut(s)	570, 746, 814
MspR9I	CCNGG	2 cut(s)	746, 814
MwoI	GCNNNNNNNGC	5 cut(s)	179, 311, 602, 611, 1039
NciI	CCSGG	2 cut(s)	746, 814
NdeII	GATC	3 cut(s)	556, 763, 953
NlaIII	CATG	9 cut(s)	122, 209, 352, 475, 595, 622, 883, 947, 1025
NlaIV	GGNNCC	2 cut(s)	141, 558
NmuCI	GTSAC	2 cut(s)	502, 637
NspI	RCATGY	1 cut(s)	475
PagI	TCATGA	1 cut(s)	205
PceI	AGGCCT	1 cut(s)	649
PciI	ACATGT	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PfeI	GAWTC	2 cut(s)	212, 1059
PfoI	TCCNGGA	1 cut(s)	744
PkrI	GCNGC	6 cut(s)	71, 184, 438, 522, 546, 607
PleI	GAGTC	5 cut(s)	115, 742, 743, 798, 862
PmaCI	CACGTG	1 cut(s)	507
PmlI	CACGTG	1 cut(s)	507
PpsI	GAGTC	5 cut(s)	115, 742, 743, 798, 862
Ppu21I	YACGTR	1 cut(s)	507
PscI	ACATGT	1 cut(s)	471
PspCI	CACGTG	1 cut(s)	507
PspN4I	GGNNCC	2 cut(s)	141, 558
PspOMI	GGGCCC	1 cut(s)	139
PspPI	GGNCC	3 cut(s)	139, 140, 959
PsuI	RGATCY	1 cut(s)	556
RseI	CAYNNNNRTG	2 cut(s)	117, 848
SaqAI	TTAA	4 cut(s)	5, 243, 756, 818
SatI	GCNGC	6 cut(s)	70, 183, 437, 521, 545, 606
Sau3AI	GATC	3 cut(s)	556, 763, 953
Sau96I	GGNCC	3 cut(s)	139, 140, 959
SchI	GAGTC	5 cut(s)	116, 743, 743, 798, 862
ScrFI	CCNGG	2 cut(s)	746, 814
SduI	GDGCHC	3 cut(s)	63, 143, 396
SfcI	CTRYAG	1 cut(s)	994
SmiMI	CAYNNNNRTG	2 cut(s)	117, 848
Sse9I	AATT	3 cut(s)	496, 820, 936
SseBI	AGGCCT	1 cut(s)	649
SsiI	CCGC	1 cut(s)	518
SspMI	CTAG	2 cut(s)	249, 306
StuI	AGGCCT	1 cut(s)	649
StyD4I	CCNGG	2 cut(s)	744, 812
StyI	CCWWGG	2 cut(s)	175, 282
TaaI	ACNGT	2 cut(s)	23, 894
TaiI	ACGT	1 cut(s)	509
TaqI	TCGA	1 cut(s)	585
TasI	AATT	3 cut(s)	496, 820, 936
TfiI	GAWTC	2 cut(s)	212, 1059
Tru1I	TTAA	4 cut(s)	5, 243, 756, 818
Tru9I	TTAA	4 cut(s)	5, 243, 756, 818
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	2 cut(s)	502, 637
TseI	GCWGC	6 cut(s)	69, 182, 436, 520, 544, 605
Tsp45I	GTSAC	2 cut(s)	502, 637
TspDTI	ATGAA	6 cut(s)	179, 194, 222, 617, 828, 832
TspGWI	ACGGA	3 cut(s)	175, 713, 965
TspRI	CASTG	1 cut(s)	106
XapI	RAATTY	1 cut(s)	496
XceI	RCATGY	1 cut(s)	475
XspI	CTAG	2 cut(s)	249, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.