Rh7AG443100

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013859
Physical Location & Seq
Forward (+)
60156958 .. 60157398
441 bp
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UTR
Exon/CDS
Intron
Rh7AG443100.1

Sequence Viewer

Length: 441 bp
ATGTTACCTAATGGGTTTGTGGAGCGAGTCAAGGACCGTGGGATGGTACATTTTGGTTGGGCACCTCAAGTTGGGATACTGAGCCATGACTCGGTGGGAGGGTTCTTGACACATTGTGTTTGGAACTCGATGATCGAAGGGCTAGGGTTCGGGCGGGTTTTGATACTATTTCCCATGTTAAATGATCAAGGGCTAAATGCTAGGTTGGTGAACGGTAAGGGACTCGGGGTGGAGATACCTCGGAACGAGCTAGACGGGTCATTTACGCGAGACTCGGTGGCCGAGTTTGTGAGGTTGGCAATGGTGGATGACTCGGGCGAGTTGCTAAGGAGGAGAGTCAAGGAAATGAAGGGTATGTTTGGAGATAGAAATAGGAACAATCGACTTGAAAACGAGTTCTTATGTTTTCTTGAGGAGAATAGGCCGAACAAACTAGCTTAA

Protein Analysis

146

Amino Acids

16.51

Weight (kDa)

6.84

Isoelectric Point (pI)

31.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 18 - 84 3.4e-10 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013859)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49690
fragaria_vesca FvH4_5g34510
malus_domestica MD08G1200700.v1.1
prunus_persica Prupe.1G534200_v2.0.a1
pyrus_communis pycom08g17420 pycom08g17430
rosa_chinensis RchiOBHm_Chr7g0235171
rosa_laevigata RLG00000001177
rosa_multiflora Rmu_sc0004657.1_g000008 Rmu_sc0015485.1_g000005
rosa_roxburghii Rroxscaffold_3G00226240
rosa_rugosa Rorug07G0288600
rosa_samantha Rh7AG443000 Rh7AG443100 Rh7BG416000 Rh7CG464200
rosa_wichuraiana Rw7G036840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AccII CGCG 1 cut(s) 268
AciI CCGC 1 cut(s) 154
AcoI YGGCCR 1 cut(s) 279
AdeI CACNNNGTG 1 cut(s) 116
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 3 cut(s) 43, 71, 91
AgsI TTSAA 1 cut(s) 389
AluBI AGCT 2 cut(s) 250, 437
AluI AGCT 2 cut(s) 250, 437
Alw26I GTCTC 1 cut(s) 264
Ama87I CYCGRG 2 cut(s) 224, 313
AoxI GGCC 2 cut(s) 279, 422
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 220
AvaI CYCGRG 2 cut(s) 224, 313
AvaII GGWCC 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 61
BccI CCATC 1 cut(s) 37
BciVI GTATCC 1 cut(s) 69
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 4 cut(s) 143, 201, 251, 434
BfuI GTATCC 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 34
BmeT110I CYCGRG 2 cut(s) 224, 313
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 326
BpuEI CTTGAG 2 cut(s) 51, 431
BsaJI CCNNGG 2 cut(s) 37, 239
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 71, 91
Bse3DI GCAATG 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 37, 239
BseGI GGATG 2 cut(s) 48, 313
BseLI CCNNNNNNNGG 3 cut(s) 43, 71, 91
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 1 cut(s) 71
BseRI GAGGAG 2 cut(s) 346, 428
BseSI GKGCMC 1 cut(s) 64
Bsh1236I CGCG 1 cut(s) 268
BshFI GGCC 2 cut(s) 281, 424
BshNI GGYRCC 1 cut(s) 61
BsiHKCI CYCGRG 2 cut(s) 224, 313
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 3 cut(s) 43, 71, 91
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 234
BsnI GGCC 2 cut(s) 281, 424
BsoBI CYCGRG 2 cut(s) 224, 313
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 2 cut(s) 132, 184
BspACI CCGC 1 cut(s) 154
BspANI GGCC 2 cut(s) 281, 424
BspCNI CTCAG 1 cut(s) 72
BspFNI CGCG 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 306
BssECI CCNNGG 2 cut(s) 37, 239
BssMI GATC 2 cut(s) 132, 184
Bst4CI ACNGT 2 cut(s) 38, 215
BstDEI CTNAG 2 cut(s) 80, 326
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 2 cut(s) 48, 313
BstFNI CGCG 1 cut(s) 268
BstKTI GATC 2 cut(s) 135, 187
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 2 cut(s) 132, 184
BstSLI GKGCMC 1 cut(s) 64
BstUI CGCG 1 cut(s) 268
BsuI GTATCC 1 cut(s) 69
BsuRI GGCC 2 cut(s) 281, 424
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 2 cut(s) 48, 313
Cfr13I GGNCC 1 cut(s) 34
Csp6I GTAC 1 cut(s) 47
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CviAII CATG 2 cut(s) 86, 175
CviJI RGCY 7 cut(s) 84, 142, 193, 250, 281, 424, 437
CviKI_1 RGCY 7 cut(s) 84, 142, 193, 250, 281, 424, 437
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 2 cut(s) 80, 326
DpnI GATC 2 cut(s) 134, 186
DpnII GATC 2 cut(s) 132, 184
DraIII CACNNNGTG 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 34
Eco88I CYCGRG 2 cut(s) 224, 313
FaeI CATG 2 cut(s) 89, 178
FaiI YATR 4 cut(s) 87, 176, 356, 403
FaqI GGGAC 1 cut(s) 234
FatI CATG 2 cut(s) 85, 174
FauI CCCGC 1 cut(s) 147
FbaI TGATCA 1 cut(s) 184
FokI GGATG 2 cut(s) 55, 320
FspBI CTAG 4 cut(s) 143, 201, 251, 434
HaeIII GGCC 2 cut(s) 281, 424
Hin1II CATG 2 cut(s) 89, 178
HinfI GANTC 6 cut(s) 27, 89, 222, 272, 311, 336
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 2 cut(s) 106, 410
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 2 cut(s) 131, 343
HpyCH4III ACNGT 2 cut(s) 38, 215
HpyF3I CTNAG 2 cut(s) 80, 326
Hsp92II CATG 2 cut(s) 89, 178
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 2 cut(s) 132, 184
LmnI GCTCC 1 cut(s) 22
MaeI CTAG 4 cut(s) 143, 201, 251, 434
MaeIII GTNAC 1 cut(s) 3
MalI GATC 2 cut(s) 134, 186
MboI GATC 2 cut(s) 132, 184
MhlI GDGCHC 1 cut(s) 64
MlyI GAGTC 6 cut(s) 36, 83, 216, 266, 305, 345
MnlI CCTC 6 cut(s) 75, 92, 249, 285, 324, 406
MseI TTAA 2 cut(s) 179, 439
MvnI CGCG 1 cut(s) 268
NdeII GATC 2 cut(s) 132, 184
NlaIII CATG 2 cut(s) 89, 178
NlaIV GGNNCC 1 cut(s) 63
NmeAIII GCCGAG 1 cut(s) 307
PleI GAGTC 6 cut(s) 35, 83, 216, 266, 305, 344
PpsI GAGTC 6 cut(s) 35, 83, 216, 266, 305, 344
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 34
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SaqAI TTAA 2 cut(s) 179, 439
Sau3AI GATC 2 cut(s) 132, 184
Sau96I GGNCC 1 cut(s) 34
SchI GAGTC 6 cut(s) 36, 83, 216, 266, 305, 345
SduI GDGCHC 1 cut(s) 64
SetI ASST 7 cut(s) 10, 67, 206, 241, 252, 296, 439
SinI GGWCC 1 cut(s) 34
SmlI CTYRAG 2 cut(s) 66, 410
SmoI CTYRAG 2 cut(s) 66, 410
SsiI CCGC 1 cut(s) 154
SspMI CTAG 4 cut(s) 143, 201, 251, 434
TaaI ACNGT 2 cut(s) 38, 215
TaqI TCGA 3 cut(s) 128, 135, 382
Tru1I TTAA 2 cut(s) 179, 439
Tru9I TTAA 2 cut(s) 179, 439
TspDTI ATGAA 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 34
XspI CTAG 4 cut(s) 143, 201, 251, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.