Rh7DG023900

conserved protein UCP031088, alpha beta hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0010669
Physical Location & Seq
Forward (+)
1887981 .. 1892025
4045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG023900.1

Sequence Viewer

Length: 1224 bp
ATGTCGTTTCTGGTTCCCGGTTCCGACCTCCGTTCCCTCGCCACCGCTTTCGGTACCGACCGTTACTACTTCAGCCCAGTCAGGTGCCCCGAACCGCTTCGCGTCTCCTCCCGCCGCAGCCCCGCTAACGGCGTAGCCTTGGGTTTGGACAAGAGAAACGGCCCGCGGTGGTCGGTTTGTACCGCCGACGAGCTTCACTTCGTCTCTGTTCCCGATTCCGACTGGAACCTCGCTCTCTGGCGCTACCTTCCCTCTCCTCAGAGCGAGCGGAGGAATCATCCGCTGTTACTGTTGTCGGGGGTCGCCACAAATGCTATTGGATTCGATCTCTCCCCTGAGTTCTCCTTTGCGCGCTCCATGTCGGCGCAAGGATATGATACCTGGATTCTTGAAGTCAGAGGTGCTGGGTTGAGCACACATGGAACCGACTCGGGGGAAGTAAATGGTTTGTTAGAAGCAGGGCAAAACCATGCTACACAGATTGGGGGTTTAAGTCAAACACCATTAAACATCATGGAAGTAGGTCAACGAGCGGTTACAAGTTTTGCAGACTTCCAAGAGCGTTTTTCAACTACATTAGAAGATTTCCAGAAGCAACTTGATCTTGTCGCAAAGCTTGATTGGGACTTTGATCACTACTTGGAAGAGGATGTGCCTGTTGCGATGGAGTATATAAGAACTCAATGCAAACCAGAGGATGGGAAGCTTCTCGCGATTGGACACTCGATGGGGGGTATCTTGCTATATGCAATGCTCTCACGATGCTCTTCTCAAGGACAAGATTCTGGATTCGCATCAGTTGTTACTTTGGGGTCATCACTTGACTACAGGCCTTCAAAATCATCACTGAAATTGTTTTTACCTCTGGCAGACCCTGCTCAGGTGGTAAATGTTCCTGTTCCGTTCGGCGCAATATATACTGCTGTGCATCATCTTGTGAGTGGTACTCCAGTTTTGTCTTGGTTAAAACCTCAAGTTTCTGCTCAAGACCTGATGGATCCAGAGTTATATGAAAAGCTTATCTTAAACAACTTTGGTACTGTCCCTGCTAAGCTTCTCTTGCAGCTAGCAACAGTCTTCCAGGAGGGTGGTTTACGTGACAGGAGTGGGACTTTCTTTTACAAGGAACATCTATGCAAAAGCAATGTCCCAATCTTGGCCCTTGGAGGAGATCAAGACCTAATATGTCCTCCTGAAGCCGTTTATGGTAGAATGTTAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Hydrolase_4

Protein Analysis

407

Amino Acids

44.68

Weight (kDa)

5.31

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73750 AT1G73750
fragaria_vesca FvH4_5g16710 FvH4_5g16710 FvH4_5g16710
malus_domestica MD06G1220800.v1.1
prunus_persica Prupe.5G225200_v2.0.a1 Prupe.5G225200_v2.0.a1
pyrus_communis pycom06g19670
rosa_chinensis RchiOBHm_Chr7g0179391
rosa_laevigata RLG00000005360
rosa_multiflora Rmu_sc0002581.1_g000004 Rmu_sc0019996.1_g000001
rosa_roxburghii Rroxscaffold_3G00274070
rosa_rugosa Rorug06G0424000
rosa_samantha Rh7AG023400 Rh7BG023000 Rh7CG024400 Rh7DG023900
rosa_wichuraiana Rw7G001890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 53
AccB1I GGYRCC 2 cut(s) 53, 84
AccB7I CCANNNNNTGG 1 cut(s) 698
AccBSI CCGCTC 2 cut(s) 268, 533
AccII CGCG 4 cut(s) 102, 166, 352, 713
AclWI GGATC 2 cut(s) 992, 1005
AcuI CTGAAG 2 cut(s) 55, 1215
AfaI GTAC 4 cut(s) 55, 181, 946, 1039
AfiI CCNNNNNNNGG 5 cut(s) 128, 432, 698, 880, 1156
AgsI TTSAA 3 cut(s) 392, 570, 837
AjnI CCWGG 2 cut(s) 380, 1080
AluBI AGCT 6 cut(s) 193, 616, 706, 1018, 1054, 1066
AluI AGCT 6 cut(s) 193, 616, 706, 1018, 1054, 1066
Alw21I GWGCWC 1 cut(s) 416
Alw26I GTCTC 2 cut(s) 109, 208
AlwI GGATC 2 cut(s) 992, 1005
AlwNI CAGNNNCTG 1 cut(s) 875
Ama87I CYCGRG 1 cut(s) 430
AoxI GGCC 3 cut(s) 160, 830, 1158
ApeKI GCWGC 2 cut(s) 117, 1063
ArsI GACNNNNNNTTYG 2 cut(s) 1131, 1163
Asp700I GAANNNNTTC 1 cut(s) 96
Asp718I GGTACC 1 cut(s) 53
AspLEI GCGC 5 cut(s) 243, 352, 354, 367, 911
AspS9I GGNCC 2 cut(s) 161, 1159
AsuC2I CCSGG 1 cut(s) 18
AsuNHI GCTAGC 1 cut(s) 1066
AvaI CYCGRG 1 cut(s) 430
BaeGI GKGCMC 1 cut(s) 89
BaeI ACNNNNGTAYC 2 cut(s) 936, 969
BamHI GGATCC 1 cut(s) 997
BanI GGYRCC 2 cut(s) 53, 84
BbsI GAAGAC 1 cut(s) 1069
Bbv12I GWGCWC 1 cut(s) 416
BbvI GCAGC 2 cut(s) 129, 1075
BccI CCATC 4 cut(s) 658, 692, 721, 988
BceAI ACGGC 3 cut(s) 145, 175, 1184
BciT130I CCWGG 2 cut(s) 382, 1082
BclI TGATCA 1 cut(s) 631
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 2 cut(s) 109, 208
BfaI CTAG 1 cut(s) 1067
BfmI CTRYAG 1 cut(s) 826
BfoI RGCGCY 1 cut(s) 244
BisI GCNGC 3 cut(s) 115, 118, 1064
BlpI GCTNAGC 1 cut(s) 1050
BlsI GCNGC 3 cut(s) 116, 119, 1065
Bme1390I CCNGG 3 cut(s) 18, 382, 1082
BmeT110I CYCGRG 1 cut(s) 430
BmgT120I GGNCC 2 cut(s) 161, 1159
BmiI GGNNCC 7 cut(s) 15, 22, 55, 86, 227, 424, 999
BmrFI CCNGG 3 cut(s) 18, 382, 1082
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 3 cut(s) 752, 803, 937
BmtI GCTAGC 1 cut(s) 1070
BmuI ACTGGG 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 1069
BplI GAGNNNNNCTC 2 cut(s) 931, 963
BpmI CTGGAG 1 cut(s) 933
Bpu10I CCTNAGC 1 cut(s) 879
Bpu1102I GCTNAGC 1 cut(s) 1050
BpuEI CTTGAG 3 cut(s) 756, 957, 969
BpuMI CCSGG 1 cut(s) 18
BsaAI YACGTR 1 cut(s) 1097
BsaBI GATNNNNATC 1 cut(s) 793
BsaJI CCNNGG 3 cut(s) 138, 164, 1162
Bsc4I CCNNNNNNNGG 5 cut(s) 128, 432, 698, 880, 1156
Bse1I ACTGG 3 cut(s) 77, 227, 950
Bse3DI GCAATG 2 cut(s) 756, 1150
Bse8I GATNNNNATC 1 cut(s) 793
BseBI CCWGG 2 cut(s) 382, 1082
BseDI CCNNGG 3 cut(s) 138, 164, 1162
BseGI GGATG 3 cut(s) 277, 655, 703
BseJI GATNNNNATC 1 cut(s) 793
BseLI CCNNNNNNNGG 5 cut(s) 128, 432, 698, 880, 1156
BseMI GCAATG 2 cut(s) 756, 1150
BseMII CTCAG 3 cut(s) 272, 327, 893
BseNI ACTGG 3 cut(s) 77, 227, 950
BsePI GCGCGC 1 cut(s) 350
BseRI GAGGAG 3 cut(s) 97, 246, 1182
BseSI GKGCMC 1 cut(s) 89
BseXI GCAGC 2 cut(s) 129, 1075
BseYI CCCAGC 1 cut(s) 404
Bsh1236I CGCG 4 cut(s) 102, 166, 352, 713
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 3 cut(s) 162, 832, 1160
BshNI GGYRCC 2 cut(s) 53, 84
BsiEI CGRYCG 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 416
BsiHKCI CYCGRG 1 cut(s) 430
BsiSI CCGG 1 cut(s) 18
BslFI GGGAC 4 cut(s) 638, 1028, 1123, 1133
BslI CCNNNNNNNGG 5 cut(s) 128, 432, 698, 880, 1156
BsmAI GTCTC 2 cut(s) 109, 208
BsmBI CGTCTC 2 cut(s) 109, 208
BsmFI GGGAC 4 cut(s) 638, 1028, 1123, 1133
BsnI GGCC 3 cut(s) 162, 832, 1160
BsoBI CYCGRG 1 cut(s) 430
Bsp1286I GDGCHC 2 cut(s) 89, 416
Bsp143I GATC 5 cut(s) 325, 601, 631, 997, 1171
Bsp1720I GCTNAGC 1 cut(s) 1050
Bsp68I TCGCGA 1 cut(s) 713
BspANI GGCC 3 cut(s) 162, 832, 1160
BspCNI CTCAG 3 cut(s) 271, 328, 892
BspFNI CGCG 4 cut(s) 102, 166, 352, 713
BspLI GGNNCC 7 cut(s) 15, 22, 55, 86, 227, 424, 999
BspOI GCTAGC 1 cut(s) 1070
BspPI GGATC 2 cut(s) 992, 1005
BspQI GCTCTTC 1 cut(s) 772
BspT107I GGYRCC 2 cut(s) 53, 84
BsrBI CCGCTC 2 cut(s) 268, 533
BsrDI GCAATG 2 cut(s) 756, 1150
BsrI ACTGG 3 cut(s) 77, 227, 950
BssECI CCNNGG 3 cut(s) 138, 164, 1162
BssHII GCGCGC 1 cut(s) 350
BssMI GATC 5 cut(s) 325, 601, 631, 997, 1171
BssT1I CCWWGG 2 cut(s) 138, 1162
Bst2UI CCWGG 2 cut(s) 382, 1082
Bst4CI ACNGT 4 cut(s) 62, 291, 1042, 1075
Bst6I CTCTTC 2 cut(s) 639, 772
BstAPI GCANNNNNTGC 1 cut(s) 875
BstBAI YACGTR 1 cut(s) 1097
BstC8I GCNNGC 4 cut(s) 164, 266, 352, 1068
BstDEI CTNAG 4 cut(s) 258, 336, 879, 1050
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 3 cut(s) 277, 655, 703
BstFNI CGCG 4 cut(s) 102, 166, 352, 713
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 5 cut(s) 243, 352, 354, 367, 911
BstKTI GATC 5 cut(s) 328, 604, 634, 1000, 1174
BstMAI GTCTC 2 cut(s) 109, 208
BstMBI GATC 5 cut(s) 325, 601, 631, 997, 1171
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 3 cut(s) 311, 875, 1060
BstNI CCWGG 2 cut(s) 382, 1082
BstSCI CCNGG 3 cut(s) 16, 380, 1080
BstSFI CTRYAG 1 cut(s) 826
BstSLI GKGCMC 1 cut(s) 89
BstUI CGCG 4 cut(s) 102, 166, 352, 713
BstV1I GCAGC 2 cut(s) 129, 1075
BstV2I GAAGAC 1 cut(s) 1069
BstX2I RGATCY 1 cut(s) 997
BstXI CCANNNNNNTGG 1 cut(s) 1088
BstYI RGATCY 1 cut(s) 997
BsuRI GGCC 3 cut(s) 162, 832, 1160
BtgI CCRYGG 1 cut(s) 164
BtgZI GCGATG 1 cut(s) 677
BtsCI GGATG 3 cut(s) 277, 655, 703
BtsIMutI CAGTG 1 cut(s) 845
BtuMI TCGCGA 1 cut(s) 713
Cac8I GCNNGC 4 cut(s) 164, 266, 352, 1068
CaiI CAGNNNCTG 1 cut(s) 875
CfoI GCGC 5 cut(s) 243, 352, 354, 367, 911
Cfr13I GGNCC 2 cut(s) 161, 1159
Cfr42I CCGCGG 1 cut(s) 167
CseI GACGC 1 cut(s) 91
Csp6I GTAC 4 cut(s) 54, 180, 945, 1038
CviAII CATG 4 cut(s) 358, 419, 470, 514
CviQI GTAC 4 cut(s) 54, 180, 945, 1038
DdeI CTNAG 4 cut(s) 258, 336, 879, 1050
DpnI GATC 5 cut(s) 327, 603, 633, 999, 1173
DpnII GATC 5 cut(s) 325, 601, 631, 997, 1171
Eam1104I CTCTTC 2 cut(s) 639, 772
EarI CTCTTC 2 cut(s) 639, 772
Eco130I CCWWGG 2 cut(s) 138, 1162
Eco147I AGGCCT 1 cut(s) 832
Eco57I CTGAAG 2 cut(s) 55, 1215
Eco88I CYCGRG 1 cut(s) 430
EcoRII CCWGG 2 cut(s) 380, 1080
EcoT14I CCWWGG 2 cut(s) 138, 1162
ErhI CCWWGG 2 cut(s) 138, 1162
Esp3I CGTCTC 2 cut(s) 109, 208
FaeI CATG 4 cut(s) 361, 422, 473, 517
FalI AAGNNNNNCTT 4 cut(s) 1007, 1039, 1043, 1075
FaqI GGGAC 4 cut(s) 638, 1028, 1123, 1133
FatI CATG 4 cut(s) 357, 418, 469, 513
FauI CCCGC 3 cut(s) 119, 130, 171
FbaI TGATCA 1 cut(s) 631
Fnu4HI GCNGC 3 cut(s) 115, 118, 1064
FokI GGATG 3 cut(s) 264, 662, 710
Fsp4HI GCNGC 3 cut(s) 115, 118, 1064
FspBI CTAG 1 cut(s) 1067
GlaI GCGC 5 cut(s) 242, 351, 353, 366, 910
GluI GCNGC 3 cut(s) 115, 118, 1064
GsaI CCCAGC 1 cut(s) 408
GsuI CTGGAG 1 cut(s) 933
HaeII RGCGCY 1 cut(s) 244
HaeIII GGCC 3 cut(s) 162, 832, 1160
HapII CCGG 1 cut(s) 18
HgaI GACGC 1 cut(s) 91
HhaI GCGC 5 cut(s) 243, 352, 354, 367, 911
Hin1II CATG 4 cut(s) 361, 422, 473, 517
Hin6I GCGC 5 cut(s) 241, 350, 352, 365, 909
HinP1I GCGC 5 cut(s) 241, 350, 352, 365, 909
HincII GTYRAC 1 cut(s) 527
HindII GTYRAC 1 cut(s) 527
HindIII AAGCTT 4 cut(s) 614, 704, 1016, 1052
HinfI GANTC 7 cut(s) 215, 274, 321, 385, 428, 782, 789
HpaII CCGG 1 cut(s) 18
Hpy166II GTNNAC 2 cut(s) 527, 1094
Hpy188I TCNGA 4 cut(s) 25, 220, 261, 398
Hpy8I GTNNAC 2 cut(s) 527, 1094
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 257, 843
HpyCH4III ACNGT 4 cut(s) 62, 291, 1042, 1075
HpyCH4IV ACGT 1 cut(s) 1096
HpyCH4V TGCA 6 cut(s) 548, 687, 749, 928, 1063, 1137
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 875, 1060
HpyF3I CTNAG 4 cut(s) 258, 336, 879, 1050
HpySE526I ACGT 1 cut(s) 1096
Hsp92II CATG 4 cut(s) 361, 422, 473, 517
HspAI GCGC 5 cut(s) 241, 350, 352, 365, 909
KpnI GGTACC 1 cut(s) 57
Ksp22I TGATCA 1 cut(s) 631
KspI CCGCGG 1 cut(s) 167
Kzo9I GATC 5 cut(s) 325, 601, 631, 997, 1171
LguI GCTCTTC 1 cut(s) 772
LmnI GCTCC 1 cut(s) 359
Lsp1109I GCAGC 2 cut(s) 129, 1075
LweI GCATC 3 cut(s) 752, 803, 937
MaeI CTAG 1 cut(s) 1067
MaeII ACGT 1 cut(s) 1096
MaeIII GTNAC 5 cut(s) 62, 285, 535, 802, 1097
MalI GATC 5 cut(s) 327, 603, 633, 999, 1173
MbiI CCGCTC 2 cut(s) 268, 533
MboI GATC 5 cut(s) 325, 601, 631, 997, 1171
MboII GAAGA 4 cut(s) 593, 656, 759, 1069
MflI RGATCY 1 cut(s) 997
MhlI GDGCHC 2 cut(s) 89, 416
MluCI AATT 1 cut(s) 851
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 2 cut(s) 48, 243
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 5 cut(s) 491, 506, 965, 1025, 1217
MspA1I CMGCKG 2 cut(s) 166, 283
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 3 cut(s) 18, 382, 1082
MvaI CCWGG 2 cut(s) 382, 1082
MvnI CGCG 4 cut(s) 102, 166, 352, 713
MwoI GCNNNNNNNGC 3 cut(s) 311, 875, 1060
NciI CCSGG 1 cut(s) 18
NdeII GATC 5 cut(s) 325, 601, 631, 997, 1171
NheI GCTAGC 1 cut(s) 1066
NlaIII CATG 4 cut(s) 361, 422, 473, 517
NlaIV GGNNCC 7 cut(s) 15, 22, 55, 86, 227, 424, 999
NmuCI GTSAC 1 cut(s) 1097
NruI TCGCGA 1 cut(s) 713
PauI GCGCGC 1 cut(s) 350
PceI AGGCCT 1 cut(s) 832
PciSI GCTCTTC 1 cut(s) 772
PdmI GAANNNNTTC 1 cut(s) 96
PfeI GAWTC 6 cut(s) 215, 274, 321, 385, 782, 789
PflMI CCANNNNNTGG 1 cut(s) 698
PfoI TCCNGGA 1 cut(s) 1080
PkrI GCNGC 3 cut(s) 116, 119, 1065
PleI GAGTC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 422
Ppu21I YACGTR 1 cut(s) 1097
Psp6I CCWGG 2 cut(s) 380, 1080
PspFI CCCAGC 1 cut(s) 404
PspGI CCWGG 2 cut(s) 380, 1080
PspN4I GGNNCC 7 cut(s) 15, 22, 55, 86, 227, 424, 999
PspPI GGNCC 2 cut(s) 161, 1159
PstNI CAGNNNCTG 1 cut(s) 875
PsuI RGATCY 1 cut(s) 997
PteI GCGCGC 1 cut(s) 350
RruI TCGCGA 1 cut(s) 713
RsaI GTAC 4 cut(s) 55, 181, 946, 1039
RsaNI GTAC 4 cut(s) 54, 180, 945, 1038
SacII CCGCGG 1 cut(s) 167
SapI GCTCTTC 1 cut(s) 772
SaqAI TTAA 5 cut(s) 491, 506, 965, 1025, 1217
SatI GCNGC 3 cut(s) 115, 118, 1064
Sau3AI GATC 5 cut(s) 325, 601, 631, 997, 1171
Sau96I GGNCC 2 cut(s) 161, 1159
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 3 cut(s) 18, 382, 1082
SduI GDGCHC 2 cut(s) 89, 416
SfaNI GCATC 3 cut(s) 752, 803, 937
SfcI CTRYAG 1 cut(s) 826
Sfr303I CCGCGG 1 cut(s) 167
SgrBI CCGCGG 1 cut(s) 167
SmlI CTYRAG 3 cut(s) 771, 972, 984
SmoI CTYRAG 3 cut(s) 771, 972, 984
Sse9I AATT 1 cut(s) 851
SseBI AGGCCT 1 cut(s) 832
SspMI CTAG 1 cut(s) 1067
StuI AGGCCT 1 cut(s) 832
StyD4I CCNGG 3 cut(s) 16, 380, 1080
StyI CCWWGG 2 cut(s) 138, 1162
TaaI ACNGT 4 cut(s) 62, 291, 1042, 1075
TaiI ACGT 1 cut(s) 1099
TaqI TCGA 2 cut(s) 324, 725
TasI AATT 1 cut(s) 851
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 6 cut(s) 215, 274, 321, 385, 782, 789
Tru1I TTAA 5 cut(s) 491, 506, 965, 1025, 1217
Tru9I TTAA 5 cut(s) 491, 506, 965, 1025, 1217
TscAI CASTG 1 cut(s) 852
TseFI GTSAC 1 cut(s) 1097
TseI GCWGC 2 cut(s) 117, 1063
Tsp45I GTSAC 1 cut(s) 1097
TspDTI ATGAA 1 cut(s) 1026
TspGWI ACGGA 2 cut(s) 20, 891
TspRI CASTG 1 cut(s) 852
Van91I CCANNNNNTGG 1 cut(s) 698
XcmI CCANNNNNNNNNTGG 1 cut(s) 957
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 1 cut(s) 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.