Rw7G001890

conserved protein UCP031088, alpha beta hydrolase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
1555604 .. 1558267
2664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G001890.1

Sequence Viewer

Length: 1281 bp
ATGTCGTTTCTGGTTCCCGGTTCCGACGTCCGTTCCCTCGCCACCGCTTTCGGTACTGACCGTTACTACTTCAGCCCAGTCAGGTGCCCCGAACCGCTCCGCGTCTCCTCCCGCCGCAGCCCCGCTAACGGCGTAGCCTTGGGTTTGGACAAGAGAAACGACCCGCGGTGGTCGGTTTGTACCGCCGACGAGCTTCACTTCGTCTCTGTTCCCGATTCCGACTGGAACCTCGCTCTCTGGCGCTACCTTCCCTCTCCTCAGCGAGCCGAGGAATCATCCGCTTTACTGTTGTCGGGGGTCGCCACAAATGCTATTGGATTCGATCTCGCCCCTGAGTTCTCCTTTGCGCGCTCCATGTCGGCGCAAGGATATGATACCTGGATTCTTGAAGTCAGAGGTGCTGGGTTGAGCACACATGGAACCGACTCGGGGGAAGTAAATGGTAGGAGGCAAAACCATGCTACGCAGATTGGGGGTTTAAGTCAAACACCATTAAACATCGTGGAAGTAGGTCAACGAGCGGTTACAAGTTTTGCAGACTTCCAAGAGCGTTTTTCAACTACATTAGAAGACTTCCAGAAGCAACTTGATCTTGTCGCAAAGCTTGATTGGGACTTTGATCACCACTTGGAAGAGGATGTGCCTGTTGCGATGGAGTATATAAGAACTGAATGCAAACCAGAGGATGGGAAGCTTCTCGCGATTGGACACTCGATGGGGGGTATCTTGCTATATGCAATGCTCTCACGATGCTCTTCTCAAGGACAAGAGTCTGGATTCGCATCAGTTGTTACTTTGGGGTCATCACTTGACTACAGGCCTTCAAAATCATCACTGAAATTGTTTTTACCTCTGGCAGACCCTGCTCAGGTGGTAAATGTTCCTGTTCCGTTCGGCGCAATATATACTGCTGTGCATCATCTTGTGAGTGGTACTCCAGTTTTGTCTTGGTTAAAACCTCAAGTTTCTGCTCAAGACCTGATGGATCCAGAGTTATATGAAAAGCTTATCTTAAACAACTTTGGTACTGTCCCTGCTAAGCTTCTCTTGCAGCTAGCAACAGTCTTCCAGGATGGTGGTTTACGTGACAGGAGTGGGACTTTCTTTTACAAGGAACATCTATGCAAAAGCAATGTAATTCCTGAGCAATTGGTTACCTTCAAAGTTCTTGGAGAACTTGGCGGTCCTCATTATGCACACTACGATTTGGTTGGAGGTCGCGGGGCAGCAGGAGTGTATCCACACATTATTGAGTTTCTCAATCGTCATGACAGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

426

Amino Acids

46.83

Weight (kDa)

5.63

Isoelectric Point (pI)

53.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010669)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 30
AccB1I GGYRCC 1 cut(s) 84
AccB7I CCANNNNNTGG 1 cut(s) 686
AccBSI CCGCTC 2 cut(s) 97, 521
AccII CGCG 5 cut(s) 102, 166, 349, 701, 1221
AclWI GGATC 2 cut(s) 980, 993
AcuI CTGAAG 1 cut(s) 55
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 4 cut(s) 55, 181, 934, 1027
AfiI CCNNNNNNNGG 4 cut(s) 128, 429, 686, 868
AgsI TTSAA 4 cut(s) 389, 558, 825, 1162
AjnI CCWGG 2 cut(s) 377, 1068
AluBI AGCT 6 cut(s) 193, 604, 694, 1006, 1042, 1054
AluI AGCT 6 cut(s) 193, 604, 694, 1006, 1042, 1054
Alw21I GWGCWC 1 cut(s) 413
Alw26I GTCTC 2 cut(s) 109, 208
AlwI GGATC 2 cut(s) 980, 993
AlwNI CAGNNNCTG 1 cut(s) 863
Ama87I CYCGRG 1 cut(s) 427
AoxI GGCC 1 cut(s) 818
ApeKI GCWGC 3 cut(s) 117, 1051, 1226
AspLEI GCGC 5 cut(s) 243, 349, 351, 364, 899
AspS9I GGNCC 1 cut(s) 1184
AsuC2I CCSGG 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 614
AsuNHI GCTAGC 1 cut(s) 1054
AvaI CYCGRG 1 cut(s) 427
AvaII GGWCC 1 cut(s) 1184
BaeGI GKGCMC 1 cut(s) 89
BaeI ACNNNNGTAYC 2 cut(s) 924, 957
BamHI GGATCC 1 cut(s) 985
BanI GGYRCC 1 cut(s) 84
BbsI GAAGAC 2 cut(s) 576, 1057
Bbv12I GWGCWC 1 cut(s) 413
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 3 cut(s) 129, 1063, 1238
BccI CCATC 5 cut(s) 646, 680, 709, 976, 1067
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 2 cut(s) 379, 1070
BciVI GTATCC 1 cut(s) 1248
BclI TGATCA 1 cut(s) 619
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 2 cut(s) 109, 208
BfaI CTAG 1 cut(s) 1055
BfmI CTRYAG 1 cut(s) 814
BfoI RGCGCY 1 cut(s) 244
BfuI GTATCC 1 cut(s) 1248
BisI GCNGC 4 cut(s) 115, 118, 1052, 1227
BlpI GCTNAGC 1 cut(s) 1038
BlsI GCNGC 4 cut(s) 116, 119, 1053, 1228
Bme1390I CCNGG 3 cut(s) 18, 379, 1070
Bme18I GGWCC 1 cut(s) 1184
BmeT110I CYCGRG 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 1184
BmiI GGNNCC 6 cut(s) 15, 22, 86, 227, 421, 987
BmrFI CCNGG 3 cut(s) 18, 379, 1070
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 3 cut(s) 740, 791, 925
BmtI GCTAGC 1 cut(s) 1058
BmuI ACTGGG 1 cut(s) 71
BoxI GACNNNNGTC 1 cut(s) 769
BpiI GAAGAC 2 cut(s) 576, 1057
BplI GAGNNNNNCTC 2 cut(s) 919, 951
BpmI CTGGAG 1 cut(s) 921
Bpu10I CCTNAGC 3 cut(s) 258, 867, 1143
Bpu1102I GCTNAGC 1 cut(s) 1038
BpuEI CTTGAG 3 cut(s) 744, 945, 957
BpuMI CCSGG 1 cut(s) 18
BsaAI YACGTR 1 cut(s) 1085
BsaBI GATNNNNATC 1 cut(s) 781
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 3 cut(s) 138, 164, 267
Bsc4I CCNNNNNNNGG 4 cut(s) 128, 429, 686, 868
Bse1I ACTGG 3 cut(s) 77, 227, 938
Bse3DI GCAATG 2 cut(s) 744, 1138
Bse8I GATNNNNATC 1 cut(s) 781
BseBI CCWGG 2 cut(s) 379, 1070
BseDI CCNNGG 3 cut(s) 138, 164, 267
BseGI GGATG 4 cut(s) 275, 643, 691, 1078
BseJI GATNNNNATC 1 cut(s) 781
BseLI CCNNNNNNNGG 4 cut(s) 128, 429, 686, 868
BseMI GCAATG 2 cut(s) 744, 1138
BseMII CTCAG 4 cut(s) 272, 324, 881, 1134
BseNI ACTGG 3 cut(s) 77, 227, 938
BsePI GCGCGC 1 cut(s) 347
BseRI GAGGAG 2 cut(s) 97, 246
BseSI GKGCMC 1 cut(s) 89
BseXI GCAGC 3 cut(s) 129, 1063, 1238
BseYI CCCAGC 1 cut(s) 401
Bsh1236I CGCG 5 cut(s) 102, 166, 349, 701, 1221
BshFI GGCC 1 cut(s) 820
BshNI GGYRCC 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 413
BsiHKCI CYCGRG 1 cut(s) 427
BsiSI CCGG 1 cut(s) 18
BslFI GGGAC 3 cut(s) 626, 1016, 1111
BslI CCNNNNNNNGG 4 cut(s) 128, 429, 686, 868
BsmAI GTCTC 2 cut(s) 109, 208
BsmBI CGTCTC 2 cut(s) 109, 208
BsmFI GGGAC 3 cut(s) 626, 1016, 1111
BsmI GAATGC 1 cut(s) 677
BsnI GGCC 1 cut(s) 820
BsoBI CYCGRG 1 cut(s) 427
Bsp1286I GDGCHC 2 cut(s) 89, 413
Bsp143I GATC 4 cut(s) 322, 589, 619, 985
Bsp1720I GCTNAGC 1 cut(s) 1038
Bsp68I TCGCGA 1 cut(s) 701
BspANI GGCC 1 cut(s) 820
BspCNI CTCAG 4 cut(s) 271, 325, 880, 1135
BspFNI CGCG 5 cut(s) 102, 166, 349, 701, 1221
BspHI TCATGA 1 cut(s) 1267
BspLI GGNNCC 6 cut(s) 15, 22, 86, 227, 421, 987
BspOI GCTAGC 1 cut(s) 1058
BspPI GGATC 2 cut(s) 980, 993
BspQI GCTCTTC 1 cut(s) 760
BspT107I GGYRCC 1 cut(s) 84
BsrBI CCGCTC 2 cut(s) 97, 521
BsrDI GCAATG 2 cut(s) 744, 1138
BsrI ACTGG 3 cut(s) 77, 227, 938
BssECI CCNNGG 3 cut(s) 138, 164, 267
BssHII GCGCGC 1 cut(s) 347
BssMI GATC 4 cut(s) 322, 589, 619, 985
BssNI GRCGYC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 2 cut(s) 379, 1070
Bst4CI ACNGT 4 cut(s) 62, 288, 1030, 1063
Bst6I CTCTTC 2 cut(s) 627, 760
BstACI GRCGYC 1 cut(s) 27
BstAPI GCANNNNNTGC 1 cut(s) 863
BstBAI YACGTR 1 cut(s) 1085
BstC8I GCNNGC 3 cut(s) 264, 349, 1056
BstDEI CTNAG 5 cut(s) 258, 333, 867, 1038, 1143
BstDSI CCRYGG 1 cut(s) 164
BstEII GGTNACC 1 cut(s) 1153
BstF5I GGATG 4 cut(s) 275, 643, 691, 1078
BstFNI CGCG 5 cut(s) 102, 166, 349, 701, 1221
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 5 cut(s) 243, 349, 351, 364, 899
BstKTI GATC 4 cut(s) 325, 592, 622, 988
BstMAI GTCTC 2 cut(s) 109, 208
BstMBI GATC 4 cut(s) 322, 589, 619, 985
BstMWI GCNNNNNNNGC 3 cut(s) 308, 863, 1048
BstNI CCWGG 2 cut(s) 379, 1070
BstPAI GACNNNNGTC 1 cut(s) 769
BstPI GGTNACC 1 cut(s) 1153
BstSCI CCNGG 3 cut(s) 16, 377, 1068
BstSFI CTRYAG 1 cut(s) 814
BstSLI GKGCMC 1 cut(s) 89
BstUI CGCG 5 cut(s) 102, 166, 349, 701, 1221
BstV1I GCAGC 3 cut(s) 129, 1063, 1238
BstV2I GAAGAC 2 cut(s) 576, 1057
BstX2I RGATCY 1 cut(s) 985
BstXI CCANNNNNNTGG 1 cut(s) 1076
BstYI RGATCY 1 cut(s) 985
BsuI GTATCC 1 cut(s) 1248
BsuRI GGCC 1 cut(s) 820
BtgI CCRYGG 1 cut(s) 164
BtgZI GCGATG 1 cut(s) 665
BtsCI GGATG 4 cut(s) 275, 643, 691, 1078
BtsIMutI CAGTG 1 cut(s) 833
BtuMI TCGCGA 1 cut(s) 701
Cac8I GCNNGC 3 cut(s) 264, 349, 1056
CaiI CAGNNNCTG 1 cut(s) 863
CciI TCATGA 1 cut(s) 1267
CfoI GCGC 5 cut(s) 243, 349, 351, 364, 899
Cfr13I GGNCC 1 cut(s) 1184
Cfr42I CCGCGG 1 cut(s) 167
CseI GACGC 1 cut(s) 91
Csp6I GTAC 4 cut(s) 54, 180, 933, 1026
CviAII CATG 4 cut(s) 355, 416, 458, 1268
CviQI GTAC 4 cut(s) 54, 180, 933, 1026
DdeI CTNAG 5 cut(s) 258, 333, 867, 1038, 1143
DpnI GATC 4 cut(s) 324, 591, 621, 987
DpnII GATC 4 cut(s) 322, 589, 619, 985
Eam1104I CTCTTC 2 cut(s) 627, 760
EarI CTCTTC 2 cut(s) 627, 760
Eco130I CCWWGG 1 cut(s) 138
Eco147I AGGCCT 1 cut(s) 820
Eco47I GGWCC 1 cut(s) 1184
Eco57I CTGAAG 1 cut(s) 55
Eco88I CYCGRG 1 cut(s) 427
Eco91I GGTNACC 1 cut(s) 1153
EcoO65I GGTNACC 1 cut(s) 1153
EcoRII CCWGG 2 cut(s) 377, 1068
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
Esp3I CGTCTC 2 cut(s) 109, 208
FaeI CATG 4 cut(s) 358, 419, 461, 1271
FalI AAGNNNNNCTT 4 cut(s) 995, 1027, 1031, 1063
FaqI GGGAC 3 cut(s) 626, 1016, 1111
FatI CATG 4 cut(s) 354, 415, 457, 1267
FauI CCCGC 4 cut(s) 119, 130, 171, 1214
FbaI TGATCA 1 cut(s) 619
Fnu4HI GCNGC 4 cut(s) 115, 118, 1052, 1227
FokI GGATG 4 cut(s) 262, 650, 698, 1085
Fsp4HI GCNGC 4 cut(s) 115, 118, 1052, 1227
FspBI CTAG 1 cut(s) 1055
GlaI GCGC 5 cut(s) 242, 348, 350, 363, 898
GluI GCNGC 4 cut(s) 115, 118, 1052, 1227
GsaI CCCAGC 1 cut(s) 405
GsuI CTGGAG 1 cut(s) 921
HaeII RGCGCY 1 cut(s) 244
HaeIII GGCC 1 cut(s) 820
HapII CCGG 1 cut(s) 18
HgaI GACGC 1 cut(s) 91
HhaI GCGC 5 cut(s) 243, 349, 351, 364, 899
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 4 cut(s) 358, 419, 461, 1271
Hin6I GCGC 5 cut(s) 241, 347, 349, 362, 897
HinP1I GCGC 5 cut(s) 241, 347, 349, 362, 897
HincII GTYRAC 1 cut(s) 515
HindII GTYRAC 1 cut(s) 515
HindIII AAGCTT 4 cut(s) 602, 692, 1004, 1040
HinfI GANTC 7 cut(s) 215, 272, 318, 382, 425, 770, 777
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 614
Hpy166II GTNNAC 2 cut(s) 515, 1082
Hpy188I TCNGA 3 cut(s) 25, 220, 395
Hpy8I GTNNAC 2 cut(s) 515, 1082
Hpy99I CGWCG 2 cut(s) 29, 191
HpyAV CCTTC 3 cut(s) 257, 831, 1168
HpyCH4III ACNGT 4 cut(s) 62, 288, 1030, 1063
HpyCH4IV ACGT 2 cut(s) 27, 1084
HpyCH4V TGCA 7 cut(s) 536, 675, 737, 916, 1051, 1125, 1196
HpyF10VI GCNNNNNNNGC 3 cut(s) 308, 863, 1048
HpyF3I CTNAG 5 cut(s) 258, 333, 867, 1038, 1143
HpySE526I ACGT 2 cut(s) 27, 1084
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 4 cut(s) 358, 419, 461, 1271
HspAI GCGC 5 cut(s) 241, 347, 349, 362, 897
Ksp22I TGATCA 1 cut(s) 619
KspI CCGCGG 1 cut(s) 167
Kzo9I GATC 4 cut(s) 322, 589, 619, 985
LguI GCTCTTC 1 cut(s) 760
LmnI GCTCC 2 cut(s) 102, 356
Lsp1109I GCAGC 3 cut(s) 129, 1063, 1238
LweI GCATC 3 cut(s) 740, 791, 925
MaeI CTAG 1 cut(s) 1055
MaeII ACGT 2 cut(s) 27, 1084
MaeIII GTNAC 5 cut(s) 62, 523, 790, 1085, 1153
MalI GATC 4 cut(s) 324, 591, 621, 987
MbiI CCGCTC 2 cut(s) 97, 521
MboI GATC 4 cut(s) 322, 589, 619, 985
MboII GAAGA 4 cut(s) 581, 644, 747, 1057
MfeI CAATTG 1 cut(s) 1148
MflI RGATCY 1 cut(s) 985
MhlI GDGCHC 2 cut(s) 89, 413
MluCI AATT 3 cut(s) 839, 1137, 1148
MlyI GAGTC 2 cut(s) 419, 779
MmeI TCCRAC 3 cut(s) 48, 243, 1192
MseI TTAA 4 cut(s) 479, 494, 953, 1013
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 3 cut(s) 18, 379, 1070
MunI CAATTG 1 cut(s) 1148
Mva1269I GAATGC 1 cut(s) 677
MvaI CCWGG 2 cut(s) 379, 1070
MvnI CGCG 5 cut(s) 102, 166, 349, 701, 1221
MwoI GCNNNNNNNGC 3 cut(s) 308, 863, 1048
NciI CCSGG 1 cut(s) 18
NdeII GATC 4 cut(s) 322, 589, 619, 985
NheI GCTAGC 1 cut(s) 1054
NlaIII CATG 4 cut(s) 358, 419, 461, 1271
NlaIV GGNNCC 6 cut(s) 15, 22, 86, 227, 421, 987
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 1085
NruI TCGCGA 1 cut(s) 701
PagI TCATGA 1 cut(s) 1267
PauI GCGCGC 1 cut(s) 347
PceI AGGCCT 1 cut(s) 820
PciSI GCTCTTC 1 cut(s) 760
PctI GAATGC 1 cut(s) 677
PfeI GAWTC 5 cut(s) 215, 272, 318, 382, 777
PflMI CCANNNNNTGG 1 cut(s) 686
PfoI TCCNGGA 1 cut(s) 1068
PkrI GCNGC 4 cut(s) 116, 119, 1053, 1228
PleI GAGTC 2 cut(s) 419, 778
PpsI GAGTC 2 cut(s) 419, 778
Ppu21I YACGTR 1 cut(s) 1085
PshAI GACNNNNGTC 1 cut(s) 769
Psp6I CCWGG 2 cut(s) 377, 1068
PspEI GGTNACC 1 cut(s) 1153
PspFI CCCAGC 1 cut(s) 401
PspGI CCWGG 2 cut(s) 377, 1068
PspN4I GGNNCC 6 cut(s) 15, 22, 86, 227, 421, 987
PspPI GGNCC 1 cut(s) 1184
PstNI CAGNNNCTG 1 cut(s) 863
PsuI RGATCY 1 cut(s) 985
PteI GCGCGC 1 cut(s) 347
RruI TCGCGA 1 cut(s) 701
RsaI GTAC 4 cut(s) 55, 181, 934, 1027
RsaNI GTAC 4 cut(s) 54, 180, 933, 1026
SacII CCGCGG 1 cut(s) 167
SapI GCTCTTC 1 cut(s) 760
SaqAI TTAA 4 cut(s) 479, 494, 953, 1013
SatI GCNGC 4 cut(s) 115, 118, 1052, 1227
Sau3AI GATC 4 cut(s) 322, 589, 619, 985
Sau96I GGNCC 1 cut(s) 1184
SchI GAGTC 2 cut(s) 419, 779
ScrFI CCNGG 3 cut(s) 18, 379, 1070
SduI GDGCHC 2 cut(s) 89, 413
SfaNI GCATC 3 cut(s) 740, 791, 925
SfcI CTRYAG 1 cut(s) 814
Sfr303I CCGCGG 1 cut(s) 167
SgrBI CCGCGG 1 cut(s) 167
SinI GGWCC 1 cut(s) 1184
SmlI CTYRAG 3 cut(s) 759, 960, 972
SmoI CTYRAG 3 cut(s) 759, 960, 972
Sse9I AATT 3 cut(s) 839, 1137, 1148
SseBI AGGCCT 1 cut(s) 820
SspMI CTAG 1 cut(s) 1055
StuI AGGCCT 1 cut(s) 820
StyD4I CCNGG 3 cut(s) 16, 377, 1068
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 4 cut(s) 62, 288, 1030, 1063
TaiI ACGT 2 cut(s) 30, 1087
TaqI TCGA 2 cut(s) 321, 713
TasI AATT 3 cut(s) 839, 1137, 1148
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 5 cut(s) 215, 272, 318, 382, 777
Tru1I TTAA 4 cut(s) 479, 494, 953, 1013
Tru9I TTAA 4 cut(s) 479, 494, 953, 1013
TscAI CASTG 1 cut(s) 840
TseFI GTSAC 1 cut(s) 1085
TseI GCWGC 3 cut(s) 117, 1051, 1226
Tsp45I GTSAC 1 cut(s) 1085
TspDTI ATGAA 1 cut(s) 1014
TspGWI ACGGA 2 cut(s) 20, 879
TspRI CASTG 1 cut(s) 840
Van91I CCANNNNNTGG 1 cut(s) 686
VpaK11BI GGWCC 1 cut(s) 1184
XcmI CCANNNNNNNNNTGG 1 cut(s) 945
XspI CTAG 1 cut(s) 1055
ZraI GACGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.