Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008311

Physical Location & Seq

Genomic Coordinates Reverse (-)

50892677 .. 50893730

Gene Structure 1054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G030980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAGACATTTCTTTGGGGAACTTGAACCGTTCAGTTCTGAGATTTCGACTCTCCTTTCACTCTCCCACCCCAGTGTACTGCAATACCTTTGCGGGTTTTATGATGAAGATAAGAAGGAATGCTTCCTTGTTATGGAAAGGCAGATCTTGTTCTCTCTCCCAGTGGTGGTTGATATCATGCTTCAGATTGCAAGAGGCATGGAGTATCTCCACTCCAGAAAGATATACCATGGTGACTTGAACCCTTTCAATATATTTCTCAAGGCAAGGAGCTCTACAGAAGGTTTCTTTCAAGCAAAAGTCTCCGGTTTTGGTTTGACATCTGCCCAAAAGAAACCTACTTGCCGAAACTCACAGCAGCAGCAGCAGAAGAAACAAGAAATCGACCCTTTGATTTGGTGTGCCCCGGAAGTCCTAGCTGAGCAAGAACAAACAGGAAATACCTTTGTCCATTCAAAATTCACAGAGAAAGCAGACGTGTACAGCTTTGGGATGCTTTGCTTTGAGCTCTTGACTGGGAAGATCCCTTTTGAAGATTCACATCTCCAAGGGGACAAGATGAGTCACACTATAAGAGCAGGAGGGAGGCCTCTTTTTCCATTCCCTTCACCAAATTTCTCATCCATTTGCAGGATCTTACGCTACATAAAGAAATTCCTGGCCTTGAACCCTGATGTTGATCAGCCACCAATACTCCAATCCCCTTCCACGGACTTTTGTGAAATAGAGACATGGTTCCAGAAGCATTACAAGGCAATGGGGCATGCTGATGTAGTCTCCATCTCACAAATTCCATTCCAAATGTTTTCTTATAGACTTGGAGAGATGGACAAGACTCCTGGCTTGATCAGGATCAAGAGTTTGGATTCTGTGAGTGAAACCGCTTCGATTTTCATTATTAAGCTTGAAACTCTAGTGGTATATCCTCATGTGATGGTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1221 Pkinase_Tyr

Protein Analysis

314

Amino Acids

36.0

Weight (kDa)

6.56

Isoelectric Point (pI)

50.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	11 - 184	2.7e-22	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	42 - 197	6.8e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64300 AT1G64300 AT5G41730 AT5G41730
fragaria_vesca	FvH4_5g03980 FvH4_5g03980 FvH4_5g03980
malus_domestica	MD06G1101300.v1.1 MD14G1121000.v1.1
prunus_persica	Prupe.5G114700_v2.0.a1 Prupe.5G114700_v2.0.a1
pyrus_communis	pycom06g09650
rosa_chinensis	RchiOBHm_Chr7g0195511
rosa_laevigata	RLG00000004113
rosa_multiflora	Rmu_sc0007727.1_g000023 Rmu_ssc0000078.1_g000002
rosa_rugosa	Rorug07G0023900
rosa_samantha	Rh7AG151500 Rh7BG153200 Rh7CG156700 Rh7DG152500
rosa_wichuraiana	Rw2G030980 Rw7G012940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	93, 882
AclWI	GGATC	3 cut(s)	517, 641, 860
AcsI	RAATTY	4 cut(s)	458, 613, 653, 789
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	2 cut(s)	78, 482
AfiI	CCNNNNNNNGG	4 cut(s)	133, 166, 630, 709
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	8 cut(s)	26, 241, 250, 293, 456, 533, 667, 908
AjiI	CACGTC	1 cut(s)	478
AjnI	CCWGG	2 cut(s)	657, 838
AleI	CACNNNNGTG	1 cut(s)	72
AluBI	AGCT	5 cut(s)	273, 419, 486, 508, 904
AluI	AGCT	5 cut(s)	273, 419, 486, 508, 904
Alw21I	GWGCWC	2 cut(s)	275, 510
Alw26I	GTCTC	3 cut(s)	307, 722, 781
AlwI	GGATC	3 cut(s)	517, 641, 860
AoxI	GGCC	2 cut(s)	587, 660
ApeKI	GCWGC	3 cut(s)	358, 361, 364
ApoI	RAATTY	4 cut(s)	458, 613, 653, 789
Asp700I	GAANNNNTTC	1 cut(s)	245
AsuC2I	CCSGG	1 cut(s)	407
AsuHPI	GGTGA	2 cut(s)	245, 600
BaeGI	GKGCMC	1 cut(s)	406
BanII	GRGCYC	2 cut(s)	275, 510
Bbv12I	GWGCWC	2 cut(s)	275, 510
BbvI	GCAGC	3 cut(s)	370, 373, 376
BccI	CCATC	3 cut(s)	788, 820, 928
BciT130I	CCWGG	2 cut(s)	659, 840
BclI	TGATCA	2 cut(s)	679, 846
BcnI	CCSGG	1 cut(s)	407
BcoDI	GTCTC	3 cut(s)	307, 722, 781
BfaI	CTAG	2 cut(s)	416, 914
BfmI	CTRYAG	1 cut(s)	276
BglII	AGATCT	1 cut(s)	144
BisI	GCNGC	3 cut(s)	359, 362, 365
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	3 cut(s)	360, 363, 366
Bme1390I	CCNGG	3 cut(s)	407, 659, 840
BmgBI	CACGTC	1 cut(s)	478
BmiI	GGNNCC	1 cut(s)	737
BmrFI	CCNGG	3 cut(s)	407, 659, 840
BmrI	ACTGGG	3 cut(s)	66, 155, 525
BmsI	GCATC	1 cut(s)	483
BmuI	ACTGGG	3 cut(s)	66, 155, 525
BpmI	CTGGAG	1 cut(s)	199
Bpu1102I	GCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	407
BsaBI	GATNNNNATC	3 cut(s)	540, 678, 851
BsaJI	CCNNGG	4 cut(s)	229, 405, 547, 708
BsaWI	WCCGGW	1 cut(s)	305
BsaXI	ACNNNNNCTCC	2 cut(s)	678, 708
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 166, 630, 709
Bse1I	ACTGG	3 cut(s)	72, 161, 520
Bse3DI	GCAATG	1 cut(s)	762
Bse8I	GATNNNNATC	3 cut(s)	540, 678, 851
BseBI	CCWGG	2 cut(s)	659, 840
BseDI	CCNNGG	4 cut(s)	229, 405, 547, 708
BseGI	GGATG	2 cut(s)	498, 620
BseJI	GATNNNNATC	3 cut(s)	540, 678, 851
BseLI	CCNNNNNNNGG	4 cut(s)	133, 166, 630, 709
BseMI	GCAATG	1 cut(s)	762
BseMII	CTCAG	2 cut(s)	30, 411
BseNI	ACTGG	3 cut(s)	72, 161, 520
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	3 cut(s)	370, 373, 376
BshFI	GGCC	2 cut(s)	589, 662
BsiHKAI	GWGCWC	2 cut(s)	275, 510
BsiSI	CCGG	2 cut(s)	306, 407
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	4 cut(s)	133, 166, 630, 709
BsmAI	GTCTC	3 cut(s)	307, 722, 781
BsmFI	GGGAC	1 cut(s)	566
BsmI	GAATGC	1 cut(s)	125
BsnI	GGCC	2 cut(s)	589, 662
Bsp1286I	GDGCHC	3 cut(s)	275, 406, 510
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	6 cut(s)	144, 522, 633, 679, 846, 852
Bsp1720I	GCTNAGC	1 cut(s)	420
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	2 cut(s)	93, 882
BspANI	GGCC	2 cut(s)	589, 662
BspCNI	CTCAG	2 cut(s)	31, 412
BspLI	GGNNCC	1 cut(s)	737
BspPI	GGATC	3 cut(s)	517, 641, 860
BsrDI	GCAATG	1 cut(s)	762
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	3 cut(s)	72, 161, 520
BssECI	CCNNGG	4 cut(s)	229, 405, 547, 708
BssMI	GATC	6 cut(s)	144, 522, 633, 679, 846, 852
BssT1I	CCWWGG	2 cut(s)	229, 547
Bst2UI	CCWGG	2 cut(s)	659, 840
Bst4CI	ACNGT	1 cut(s)	30
BstAUI	TGTACA	1 cut(s)	480
BstC8I	GCNNGC	1 cut(s)	765
BstDEI	CTNAG	2 cut(s)	39, 420
BstDSI	CCRYGG	2 cut(s)	229, 708
BstF5I	GGATG	2 cut(s)	498, 620
BstKTI	GATC	6 cut(s)	147, 525, 636, 682, 849, 855
BstMAI	GTCTC	3 cut(s)	307, 722, 781
BstMBI	GATC	6 cut(s)	144, 522, 633, 679, 846, 852
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstNI	CCWGG	2 cut(s)	659, 840
BstNSI	RCATGY	1 cut(s)	767
BstSCI	CCNGG	3 cut(s)	405, 657, 838
BstSFI	CTRYAG	1 cut(s)	276
BstSLI	GKGCMC	1 cut(s)	406
BstV1I	GCAGC	3 cut(s)	370, 373, 376
BstX2I	RGATCY	3 cut(s)	144, 522, 633
BstYI	RGATCY	3 cut(s)	144, 522, 633
BsuRI	GGCC	2 cut(s)	589, 662
BtgI	CCRYGG	2 cut(s)	229, 708
BtrI	CACGTC	1 cut(s)	478
BtsCI	GGATG	2 cut(s)	498, 620
BtsIMutI	CAGTG	2 cut(s)	79, 168
Cac8I	GCNNGC	1 cut(s)	765
Csp6I	GTAC	2 cut(s)	77, 481
CviAII	CATG	6 cut(s)	178, 199, 230, 732, 764, 929
CviJI	RGCY	9 cut(s)	273, 419, 486, 508, 589, 662, 685, 843, 904
CviKI_1	RGCY	9 cut(s)	273, 419, 486, 508, 589, 662, 685, 843, 904
CviQI	GTAC	2 cut(s)	77, 481
DdeI	CTNAG	2 cut(s)	39, 420
DpnI	GATC	6 cut(s)	146, 524, 635, 681, 848, 854
DpnII	GATC	6 cut(s)	144, 522, 633, 679, 846, 852
Ecl136II	GAGCTC	2 cut(s)	273, 508
Eco130I	CCWWGG	2 cut(s)	229, 547
Eco147I	AGGCCT	1 cut(s)	589
Eco24I	GRGCYC	2 cut(s)	275, 510
Eco32I	GATATC	1 cut(s)	175
Eco53kI	GAGCTC	2 cut(s)	273, 508
Eco57I	CTGAAG	1 cut(s)	167
EcoICRI	GAGCTC	2 cut(s)	273, 508
EcoRII	CCWGG	2 cut(s)	657, 838
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	2 cut(s)	229, 547
EcoT38I	GRGCYC	2 cut(s)	275, 510
ErhI	CCWWGG	2 cut(s)	229, 547
FaeI	CATG	6 cut(s)	181, 202, 233, 735, 767, 932
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	6 cut(s)	177, 198, 229, 731, 763, 928
FauI	CCCGC	1 cut(s)	86
FbaI	TGATCA	2 cut(s)	679, 846
Fnu4HI	GCNGC	3 cut(s)	359, 362, 365
FokI	GGATG	2 cut(s)	505, 607
FriOI	GRGCYC	2 cut(s)	275, 510
Fsp4HI	GCNGC	3 cut(s)	359, 362, 365
FspBI	CTAG	2 cut(s)	416, 914
GluI	GCNGC	3 cut(s)	359, 362, 365
GsuI	CTGGAG	1 cut(s)	199
HaeIII	GGCC	2 cut(s)	589, 662
HapII	CCGG	2 cut(s)	306, 407
Hin1II	CATG	6 cut(s)	181, 202, 233, 735, 767, 932
HindIII	AAGCTT	1 cut(s)	902
HinfI	GANTC	5 cut(s)	49, 536, 562, 835, 866
HpaII	CCGG	2 cut(s)	306, 407
HphI	GGTGA	2 cut(s)	245, 600
Hpy166II	GTNNAC	2 cut(s)	77, 481
Hpy188I	TCNGA	2 cut(s)	40, 186
Hpy188III	TCNNGA	5 cut(s)	216, 511, 739, 850, 856
Hpy8I	GTNNAC	2 cut(s)	77, 481
HpyAV	CCTTC	4 cut(s)	109, 275, 615, 714
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	3 cut(s)	82, 191, 630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
HpyF3I	CTNAG	2 cut(s)	39, 420
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	6 cut(s)	181, 202, 233, 735, 767, 932
Ksp22I	TGATCA	2 cut(s)	679, 846
Kzo9I	GATC	6 cut(s)	144, 522, 633, 679, 846, 852
LmnI	GCTCC	1 cut(s)	270
Lsp1109I	GCAGC	3 cut(s)	370, 373, 376
LweI	GCATC	1 cut(s)	483
MaeI	CTAG	2 cut(s)	416, 914
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	2 cut(s)	233, 563
MalI	GATC	6 cut(s)	146, 524, 635, 681, 848, 854
MboI	GATC	6 cut(s)	144, 522, 633, 679, 846, 852
MboII	GAAGA	4 cut(s)	119, 382, 532, 545
MflI	RGATCY	3 cut(s)	144, 522, 633
MhlI	GDGCHC	3 cut(s)	275, 406, 510
MluCI	AATT	4 cut(s)	458, 613, 653, 789
MlyI	GAGTC	3 cut(s)	43, 571, 829
MnlI	CCTC	5 cut(s)	188, 575, 579, 600, 936
MroXI	GAANNNNTTC	1 cut(s)	245
MseI	TTAA	1 cut(s)	900
MslI	CAYNNNNRTG	2 cut(s)	72, 768
MspI	CCGG	2 cut(s)	306, 407
MspR9I	CCNGG	3 cut(s)	407, 659, 840
Mva1269I	GAATGC	1 cut(s)	125
MvaI	CCWGG	2 cut(s)	659, 840
MwoI	GCNNNNNNNGC	1 cut(s)	364
NciI	CCSGG	1 cut(s)	407
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	6 cut(s)	144, 522, 633, 679, 846, 852
NlaIII	CATG	6 cut(s)	181, 202, 233, 735, 767, 932
NlaIV	GGNNCC	1 cut(s)	737
NmuCI	GTSAC	2 cut(s)	233, 563
NspI	RCATGY	1 cut(s)	767
OliI	CACNNNNGTG	1 cut(s)	72
PaeI	GCATGC	1 cut(s)	767
PceI	AGGCCT	1 cut(s)	589
PctI	GAATGC	1 cut(s)	125
PdmI	GAANNNNTTC	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	536, 866
PkrI	GCNGC	3 cut(s)	360, 363, 366
PleI	GAGTC	3 cut(s)	43, 570, 829
PpsI	GAGTC	3 cut(s)	43, 570, 829
Psp124BI	GAGCTC	2 cut(s)	275, 510
Psp6I	CCWGG	2 cut(s)	657, 838
PspGI	CCWGG	2 cut(s)	657, 838
PspN4I	GGNNCC	1 cut(s)	737
PsuI	RGATCY	3 cut(s)	144, 522, 633
RsaI	GTAC	2 cut(s)	78, 482
RsaNI	GTAC	2 cut(s)	77, 481
RseI	CAYNNNNRTG	2 cut(s)	72, 768
SacI	GAGCTC	2 cut(s)	275, 510
SaqAI	TTAA	1 cut(s)	900
SatI	GCNGC	3 cut(s)	359, 362, 365
Sau3AI	GATC	6 cut(s)	144, 522, 633, 679, 846, 852
SchI	GAGTC	3 cut(s)	43, 571, 829
ScrFI	CCNGG	3 cut(s)	407, 659, 840
SduI	GDGCHC	3 cut(s)	275, 406, 510
SfaNI	GCATC	1 cut(s)	483
SfcI	CTRYAG	1 cut(s)	276
SmiMI	CAYNNNNRTG	2 cut(s)	72, 768
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SphI	GCATGC	1 cut(s)	767
Sse9I	AATT	4 cut(s)	458, 613, 653, 789
SseBI	AGGCCT	1 cut(s)	589
SsiI	CCGC	2 cut(s)	93, 882
SspMI	CTAG	2 cut(s)	416, 914
SstI	GAGCTC	2 cut(s)	275, 510
StuI	AGGCCT	1 cut(s)	589
StyD4I	CCNGG	3 cut(s)	405, 657, 838
StyI	CCWWGG	2 cut(s)	229, 547
TaaI	ACNGT	1 cut(s)	30
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	3 cut(s)	47, 384, 887
TasI	AATT	4 cut(s)	458, 613, 653, 789
TatI	WGTACW	2 cut(s)	76, 480
TfiI	GAWTC	2 cut(s)	536, 866
Tru1I	TTAA	1 cut(s)	900
Tru9I	TTAA	1 cut(s)	900
TscAI	CASTG	2 cut(s)	79, 168
TseFI	GTSAC	2 cut(s)	233, 563
TseI	GCWGC	3 cut(s)	358, 361, 364
Tsp45I	GTSAC	2 cut(s)	233, 563
TspDTI	ATGAA	2 cut(s)	120, 883
TspGWI	ACGGA	1 cut(s)	725
TspRI	CASTG	2 cut(s)	79, 168
XapI	RAATTY	4 cut(s)	458, 613, 653, 789
XceI	RCATGY	1 cut(s)	767
XmnI	GAANNNNTTC	1 cut(s)	245
XspI	CTAG	2 cut(s)	416, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.