Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016012

Physical Location & Seq

Genomic Coordinates Reverse (-)

86486 .. 88409

Gene Structure 1924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G01200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAACGAAGAGATGAGCGGTGAGTCGCCGGAGAATAACAAACACGTAAAGAAACCGACGATGCCGGAAAAGATCGATTACGTGTTCAAGGTGGTGGTCATTGGAGATTCTGCTGTCGGGAAAACGCAGCTCCTCTCACGTTTTACACACAACGAGTTCTGTTATGATTCAAAATCAACCATTGGTGTCGAGTTTCAGACACGGACCATCACTCTTCGGGGCAAACTCGTCAAAGCTCAGATCTGGGACACCGCCGGTCAAGAGAGATACAGAGCGGTGACTAGCGCCTACTACAGAGGTGCGTTAGGTGCGATGGTGGTTTACGACATTACCAAACGCCTCTCATTCGACCACGTTGCACGTTGGGTCGAGGAATTACGTGCTCACGCCGATGATTCCGCCGTGATCATGCTCGTCGGAAACAAAGCCGATCTCTCCGTTGGTAAACGTGCCGTTCCTACGGAGGATGCAGTCGAATTCGCCGAGACTCAACGGCTTTTTTTCTCGGAAGTCTCGGCTCTAAGCGGCGGAAACGTCGACGAAGCTTTTTTCCGTTTACTCGAGGAGATTTTCAGCCGCGTTGTTGTTTCGAGAAAAGCTATGGAATCCGACGGTGGAGCCACCGTGAAACTTGACGGTTCGAGAATTGATGTCATCTCTGGTTCGGATCTTGAGACTAGTAATATCAAGGAACAAGCTTCGTGCTCGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0031410 GO:0031982 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071840 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

237

Amino Acids

26.25

Weight (kDa)

5.52

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	29 - 189	3.6e-13	ADP-ribosylation factor family
Ras	PF00071	30 - 190	7.4e-58	Ras family
Roc	PF08477	30 - 144	1.6e-33	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01200
fragaria_vesca	FvH4_7g17190
malus_domestica	MD01G1085800.v1.1 MD07G1154900.v1.1
prunus_persica	Prupe.2G193600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360581
rosa_laevigata	RLG00000027796
rosa_multiflora	Rmu_sc0003481.1_g000008
rosa_roxburghii	Rroxscaffold_4G00295980
rosa_rugosa	Rorug01G0280000
rosa_samantha	Rh1AG292000 Rh1BG256900 Rh1CG274800 Rh1DG286900
rosa_wichuraiana	Rw1G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	18, 275
AccI	GTMKAC	1 cut(s)	537
AccII	CGCG	1 cut(s)	579
AciI	CCGC	7 cut(s)	18, 252, 275, 399, 525, 528, 577
AclWI	GGATC	1 cut(s)	675
AcsI	RAATTY	1 cut(s)	476
AflIII	ACRYGT	2 cut(s)	43, 81
AgsI	TTSAA	2 cut(s)	88, 171
AhlI	ACTAGT	1 cut(s)	677
AluBI	AGCT	5 cut(s)	130, 236, 545, 599, 698
AluI	AGCT	5 cut(s)	130, 236, 545, 599, 698
Alw21I	GWGCWC	2 cut(s)	385, 707
Alw26I	GTCTC	3 cut(s)	479, 517, 668
AlwI	GGATC	1 cut(s)	675
Ama87I	CYCGRG	1 cut(s)	560
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	476
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	204
AsuHPI	GGTGA	2 cut(s)	32, 289
AvaI	CYCGRG	1 cut(s)	560
AvaII	GGWCC	1 cut(s)	204
BauI	CACGAG	1 cut(s)	706
Bbv12I	GWGCWC	2 cut(s)	385, 707
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	2 cut(s)	215, 307
BceAI	ACGGC	3 cut(s)	386, 437, 509
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BclI	TGATCA	1 cut(s)	405
BcoDI	GTCTC	3 cut(s)	479, 517, 668
BcuI	ACTAGT	1 cut(s)	677
BfaI	CTAG	2 cut(s)	282, 678
BfmI	CTRYAG	1 cut(s)	292
BfoI	RGCGCY	1 cut(s)	288
BglII	AGATCT	1 cut(s)	240
BisI	GCNGC	3 cut(s)	128, 526, 577
BlsI	GCNGC	3 cut(s)	129, 527, 578
Bme18I	GGWCC	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	560
BmgT120I	GGNCC	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	619
BmsI	GCATC	2 cut(s)	51, 457
BpuEI	CTTGAG	1 cut(s)	692
Bsa29I	ATCGAT	1 cut(s)	75
BsaAI	YACGTR	3 cut(s)	46, 82, 380
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bse118I	RCCGGY	1 cut(s)	254
BseCI	ATCGAT	1 cut(s)	75
BseGI	GGATG	1 cut(s)	472
BseMII	CTCAG	1 cut(s)	251
BseRI	GAGGAG	2 cut(s)	122, 578
BseXI	GCAGC	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	579
BshVI	ATCGAT	1 cut(s)	75
BsiHKAI	GWGCWC	2 cut(s)	385, 707
BsiHKCI	CYCGRG	1 cut(s)	560
BsiSI	CCGG	3 cut(s)	29, 65, 255
BslFI	GGGAC	1 cut(s)	260
BsmAI	GTCTC	3 cut(s)	479, 517, 668
BsmFI	GGGAC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	560
Bsp1286I	GDGCHC	2 cut(s)	385, 707
Bsp143I	GATC	5 cut(s)	72, 240, 405, 430, 667
BspACI	CCGC	7 cut(s)	18, 252, 275, 399, 525, 528, 577
BspCNI	CTCAG	1 cut(s)	250
BspDI	ATCGAT	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	579
BspLI	GGNNCC	1 cut(s)	619
BspPI	GGATC	1 cut(s)	675
BsrBI	CCGCTC	2 cut(s)	18, 275
BsrFI	RCCGGY	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	254
BssMI	GATC	5 cut(s)	72, 240, 405, 430, 667
BssSI	CACGAG	1 cut(s)	706
Bst2BI	CACGAG	1 cut(s)	706
Bst4CI	ACNGT	3 cut(s)	614, 625, 638
Bst6I	CTCTTC	2 cut(s)	3, 219
BstBAI	YACGTR	3 cut(s)	46, 82, 380
BstDEI	CTNAG	2 cut(s)	237, 521
BstF5I	GGATG	1 cut(s)	472
BstFNI	CGCG	1 cut(s)	579
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	5 cut(s)	75, 243, 408, 433, 670
BstMAI	GTCTC	3 cut(s)	479, 517, 668
BstMBI	GATC	5 cut(s)	72, 240, 405, 430, 667
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstSFI	CTRYAG	1 cut(s)	292
BstUI	CGCG	1 cut(s)	579
BstV1I	GCAGC	1 cut(s)	139
BstX2I	RGATCY	2 cut(s)	240, 667
BstYI	RGATCY	2 cut(s)	240, 667
Bsu15I	ATCGAT	1 cut(s)	75
BsuTUI	ATCGAT	1 cut(s)	75
BtgZI	GCGATG	1 cut(s)	326
BtsCI	GGATG	1 cut(s)	472
CfoI	GCGC	1 cut(s)	287
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	204
ClaI	ATCGAT	1 cut(s)	75
CviAII	CATG	1 cut(s)	409
DdeI	CTNAG	2 cut(s)	237, 521
DpnI	GATC	5 cut(s)	74, 242, 407, 432, 669
DpnII	GATC	5 cut(s)	72, 240, 405, 430, 667
Eam1104I	CTCTTC	2 cut(s)	3, 219
EarI	CTCTTC	2 cut(s)	3, 219
EciI	GGCGGA	2 cut(s)	388, 543
Eco47I	GGWCC	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	560
EcoRI	GAATTC	1 cut(s)	476
FaeI	CATG	1 cut(s)	412
FaiI	YATR	3 cut(s)	165, 410, 602
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	1 cut(s)	408
FbaI	TGATCA	1 cut(s)	405
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	3 cut(s)	128, 526, 577
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	3 cut(s)	128, 526, 577
FspBI	CTAG	2 cut(s)	282, 678
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	3 cut(s)	128, 526, 577
HaeII	RGCGCY	1 cut(s)	288
HapII	CCGG	3 cut(s)	29, 65, 255
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	1 cut(s)	412
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	2 cut(s)	543, 696
HinfI	GANTC	6 cut(s)	23, 107, 167, 395, 487, 605
HpaII	CCGG	3 cut(s)	29, 65, 255
HphI	GGTGA	2 cut(s)	32, 289
Hpy166II	GTNNAC	4 cut(s)	322, 446, 538, 557
Hpy188I	TCNGA	6 cut(s)	198, 240, 419, 508, 610, 667
Hpy188III	TCNNGA	5 cut(s)	118, 260, 591, 642, 671
Hpy8I	GTNNAC	4 cut(s)	322, 446, 538, 557
Hpy99I	CGWCG	5 cut(s)	61, 419, 539, 542, 614
HpyCH4III	ACNGT	3 cut(s)	614, 625, 638
HpyCH4IV	ACGT	8 cut(s)	45, 81, 139, 354, 361, 379, 448, 534
HpyCH4V	TGCA	2 cut(s)	359, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	2 cut(s)	237, 521
HpySE526I	ACGT	8 cut(s)	45, 81, 139, 354, 361, 379, 448, 534
Hsp92II	CATG	1 cut(s)	412
HspAI	GCGC	1 cut(s)	285
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	5 cut(s)	72, 240, 405, 430, 667
LmnI	GCTCC	2 cut(s)	135, 617
LpnPI	CCDG	5 cut(s)	42, 78, 229, 268, 645
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	2 cut(s)	51, 457
MaeI	CTAG	2 cut(s)	282, 678
MaeII	ACGT	8 cut(s)	45, 81, 139, 354, 361, 379, 448, 534
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	5 cut(s)	74, 242, 407, 432, 669
MbiI	CCGCTC	2 cut(s)	18, 275
MboI	GATC	5 cut(s)	72, 240, 405, 430, 667
MboII	GAAGA	2 cut(s)	20, 206
MflI	RGATCY	2 cut(s)	240, 667
MhlI	GDGCHC	2 cut(s)	385, 707
MluCI	AATT	3 cut(s)	374, 476, 645
MlyI	GAGTC	2 cut(s)	32, 481
MmeI	TCCRAC	2 cut(s)	397, 633
MnlI	CCTC	6 cut(s)	143, 290, 350, 364, 457, 556
MslI	CAYNNNNRTG	1 cut(s)	390
MspI	CCGG	3 cut(s)	29, 65, 255
MvnI	CGCG	1 cut(s)	579
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeII	GATC	5 cut(s)	72, 240, 405, 430, 667
NlaIII	CATG	1 cut(s)	412
NlaIV	GGNNCC	1 cut(s)	619
NmeAIII	GCCGAG	2 cut(s)	494, 508
NmuCI	GTSAC	1 cut(s)	277
PaeR7I	CTCGAG	1 cut(s)	560
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PfeI	GAWTC	4 cut(s)	107, 167, 395, 605
PkrI	GCNGC	3 cut(s)	129, 527, 578
PleI	GAGTC	2 cut(s)	31, 481
PpsI	GAGTC	2 cut(s)	31, 481
Ppu21I	YACGTR	3 cut(s)	46, 82, 380
PspN4I	GGNNCC	1 cut(s)	619
PspPI	GGNCC	1 cut(s)	204
PspXI	VCTCGAGB	1 cut(s)	560
PsuI	RGATCY	2 cut(s)	240, 667
RseI	CAYNNNNRTG	1 cut(s)	390
SalI	GTCGAC	1 cut(s)	536
SatI	GCNGC	3 cut(s)	128, 526, 577
Sau3AI	GATC	5 cut(s)	72, 240, 405, 430, 667
Sau96I	GGNCC	1 cut(s)	204
SchI	GAGTC	2 cut(s)	32, 481
SduI	GDGCHC	2 cut(s)	385, 707
SfaNI	GCATC	2 cut(s)	51, 457
SfcI	CTRYAG	1 cut(s)	292
Sfr274I	CTCGAG	1 cut(s)	560
SgrDI	CGTCGACG	1 cut(s)	536
SinI	GGWCC	1 cut(s)	204
SlaI	CTCGAG	1 cut(s)	560
SmiMI	CAYNNNNRTG	1 cut(s)	390
SmlI	CTYRAG	2 cut(s)	560, 671
SmoI	CTYRAG	2 cut(s)	560, 671
SpeI	ACTAGT	1 cut(s)	677
Sse9I	AATT	3 cut(s)	374, 476, 645
SsiI	CCGC	7 cut(s)	18, 252, 275, 399, 525, 528, 577
SspMI	CTAG	2 cut(s)	282, 678
TaaI	ACNGT	3 cut(s)	614, 625, 638
TaiI	ACGT	8 cut(s)	48, 84, 142, 357, 364, 382, 451, 537
TaqI	TCGA	9 cut(s)	75, 189, 348, 369, 474, 537, 561, 590, 641
TasI	AATT	3 cut(s)	374, 476, 645
TauI	GCSGC	2 cut(s)	528, 579
TfiI	GAWTC	4 cut(s)	107, 167, 395, 605
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	4 cut(s)	217, 427, 476, 542
VpaK11BI	GGWCC	1 cut(s)	204
XapI	RAATTY	1 cut(s)	476
XhoI	CTCGAG	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	537
XspI	CTAG	2 cut(s)	282, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.