Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016012

Physical Location & Seq

Genomic Coordinates Forward (+)

23201914 .. 23204179

Gene Structure 2266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G193600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAACCAAGAAATGAATGGGGTTGACGCTGATCAGGTTCAGAGGGTAGCTCAGGAGATTAATGGGCAAGAAAAGATAGACTATGTGTTCAAGGTGGTGGTTATTGGAGACTCAGCAGTTGGGAAGACTCAGATTCTGTCCAGGTTTACTAAGAATGAGTTCTGCTTTGACTCCAAGTCCACAATTGGGGTTGAGTTCCAGACTAGGACTGTCACCATTAAAGGCAAACTCATCAAAGCCCAGATCTGGGATACTGCTGGCCAAGAAAGGTATAGAGCAGTAACAAGTGCATACTATAGAGGTGCATTAGGGGCAATGCTGGTGTATGACATTACCAAGAGGCAGACCTTTGATCATGTTGCTAGGTGGGTGGAGGAACTCCGGGCTCACGCTGACAATTCGATCGTGATCATGCTGGTTGGGAACAAAGCTGATCTTGGGGAGCAGAGAGATGTGCCCACAGAAGATGCAGTTGAGTTTGCTGAGGATCAAGGGCTGTTCTTCTCTGAGACATCAGCCTTCAGTGGTGAGAATGTGGACACTGCATTCTTTAGTGTCCTAGAGAAGATATATGGGGTGGTGTCTAAGAAGGCATTGGAATGTGGCAATGGAAACAAATCCAATGGGGTTGCTCTTAAAGGAGCTAAAATTGATGTTATTTCTGGGTCTGAGTTGGAAATTAGTGAGATGAAGAAATTGTCTGCTTGCTCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0031410 GO:0031982 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071840 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

239

Amino Acids

26.22

Weight (kDa)

5.15

Isoelectric Point (pI)

21.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01200
fragaria_vesca	FvH4_7g17190
malus_domestica	MD01G1085800.v1.1 MD07G1154900.v1.1
prunus_persica	Prupe.2G193600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360581
rosa_laevigata	RLG00000027796
rosa_multiflora	Rmu_sc0003481.1_g000008
rosa_roxburghii	Rroxscaffold_4G00295980
rosa_rugosa	Rorug01G0280000
rosa_samantha	Rh1AG292000 Rh1BG256900 Rh1CG274800 Rh1DG286900
rosa_wichuraiana	Rw1G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	495
AcoI	YGGCCR	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	505
AfiI	CCNNNNNNNGG	3 cut(s)	186, 246, 247
AgsI	TTSAA	1 cut(s)	91
AhdI	GACNNNNNGTC	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	140
AluBI	AGCT	3 cut(s)	50, 431, 644
AluI	AGCT	3 cut(s)	50, 431, 644
Alw26I	GTCTC	2 cut(s)	102, 503
AlwI	GGATC	1 cut(s)	495
AlwNI	CAGNNNCTG	1 cut(s)	136
AoxI	GGCC	1 cut(s)	259
AseI	ATTAAT	1 cut(s)	60
Asp700I	GAANNNNTTC	1 cut(s)	158
AsuC2I	CCSGG	1 cut(s)	383
AsuHPI	GGTGA	2 cut(s)	205, 539
BaeGI	GKGCMC	1 cut(s)	459
BalI	TGGCCA	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	388
BbsI	GAAGAC	1 cut(s)	131
BbvCI	CCTCAGC	1 cut(s)	483
BciT130I	CCWGG	1 cut(s)	142
BciVI	GTATCC	1 cut(s)	244
BclI	TGATCA	3 cut(s)	31, 352, 408
BcnI	CCSGG	1 cut(s)	383
BcoDI	GTCTC	2 cut(s)	102, 503
BfaI	CTAG	3 cut(s)	204, 363, 560
BfmI	CTRYAG	1 cut(s)	295
BfuI	GTATCC	1 cut(s)	244
BglII	AGATCT	1 cut(s)	243
Bme1390I	CCNGG	2 cut(s)	142, 383
BmeRI	GACNNNNNGTC	1 cut(s)	175
BmrFI	CCNGG	2 cut(s)	142, 383
BmsI	GCATC	1 cut(s)	457
BpiI	GAAGAC	1 cut(s)	131
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
Bpu10I	CCTNAGC	2 cut(s)	51, 483
BpuMI	CCSGG	1 cut(s)	383
BsaBI	GATNNNNATC	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 246, 247
Bse3DI	GCAATG	2 cut(s)	321, 613
Bse8I	GATNNNNATC	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	142
BseJI	GATNNNNATC	1 cut(s)	407
BseLI	CCNNNNNNNGG	3 cut(s)	186, 246, 247
BseMI	GCAATG	2 cut(s)	321, 613
BseMII	CTCAG	6 cut(s)	65, 126, 143, 474, 498, 660
BseSI	GKGCMC	1 cut(s)	459
Bsh1285I	CGRYCG	1 cut(s)	405
BshFI	GGCC	1 cut(s)	261
BsiEI	CGRYCG	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	382
BslI	CCNNNNNNNGG	3 cut(s)	186, 246, 247
BsmAI	GTCTC	2 cut(s)	102, 503
BsmI	GAATGC	1 cut(s)	545
BsnI	GGCC	1 cut(s)	261
Bsp1286I	GDGCHC	2 cut(s)	388, 459
Bsp143I	GATC	7 cut(s)	31, 243, 352, 402, 408, 433, 487
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	6 cut(s)	64, 125, 142, 475, 499, 661
BspPI	GGATC	1 cut(s)	495
BsrDI	GCAATG	2 cut(s)	321, 613
BssMI	GATC	7 cut(s)	31, 243, 352, 402, 408, 433, 487
Bst2UI	CCWGG	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	211
BstC8I	GCNNGC	2 cut(s)	259, 706
BstDEI	CTNAG	8 cut(s)	51, 112, 129, 150, 483, 507, 585, 669
BstKTI	GATC	7 cut(s)	34, 246, 355, 405, 411, 436, 490
BstMAI	GTCTC	2 cut(s)	102, 503
BstMBI	GATC	7 cut(s)	31, 243, 352, 402, 408, 433, 487
BstMCI	CGRYCG	1 cut(s)	405
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	1 cut(s)	142
BstSCI	CCNGG	2 cut(s)	140, 381
BstSFI	CTRYAG	1 cut(s)	295
BstSLI	GKGCMC	1 cut(s)	459
BstV2I	GAAGAC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	261
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	2 cut(s)	529, 540
Cac8I	GCNNGC	2 cut(s)	259, 706
CaiI	CAGNNNCTG	1 cut(s)	136
CseI	GACGC	1 cut(s)	35
CviAII	CATG	2 cut(s)	356, 412
CviJI	RGCY	8 cut(s)	50, 239, 261, 386, 431, 496, 518, 644
CviKI_1	RGCY	8 cut(s)	50, 239, 261, 386, 431, 496, 518, 644
DdeI	CTNAG	8 cut(s)	51, 112, 129, 150, 483, 507, 585, 669
DpnI	GATC	7 cut(s)	33, 245, 354, 404, 410, 435, 489
DpnII	GATC	7 cut(s)	31, 243, 352, 402, 408, 433, 487
DriI	GACNNNNNGTC	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	259
Eam1105I	GACNNNNNGTC	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	505
EcoRII	CCWGG	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	388
FaeI	CATG	2 cut(s)	359, 415
FaiI	YATR	9 cut(s)	84, 273, 292, 297, 327, 357, 413, 571, 573
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FatI	CATG	2 cut(s)	355, 411
FbaI	TGATCA	3 cut(s)	31, 352, 408
FriOI	GRGCYC	1 cut(s)	388
FspBI	CTAG	3 cut(s)	204, 363, 560
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	1 cut(s)	382
HgaI	GACGC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	359, 415
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	4 cut(s)	110, 127, 133, 170
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	2 cut(s)	205, 539
Hpy166II	GTNNAC	4 cut(s)	25, 147, 180, 538
Hpy188I	TCNGA	4 cut(s)	42, 132, 508, 670
Hpy188III	TCNNGA	3 cut(s)	53, 199, 406
Hpy8I	GTNNAC	4 cut(s)	25, 147, 180, 538
HpyAV	CCTTC	2 cut(s)	529, 583
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	4 cut(s)	290, 305, 470, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	8 cut(s)	51, 112, 129, 150, 483, 507, 585, 669
Hsp92II	CATG	2 cut(s)	359, 415
Ksp22I	TGATCA	3 cut(s)	31, 352, 408
Kzo9I	GATC	7 cut(s)	31, 243, 352, 402, 408, 433, 487
LmnI	GCTCC	2 cut(s)	442, 641
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	3 cut(s)	204, 363, 560
MaeIII	GTNAC	2 cut(s)	211, 280
MalI	GATC	7 cut(s)	33, 245, 354, 404, 410, 435, 489
MboI	GATC	7 cut(s)	31, 243, 352, 402, 408, 433, 487
MboII	GAAGA	5 cut(s)	136, 476, 493, 577, 703
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	1 cut(s)	243
MhlI	GDGCHC	2 cut(s)	388, 459
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	5 cut(s)	183, 397, 648, 678, 695
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	3 cut(s)	104, 121, 164
MmeI	TCCRAC	1 cut(s)	654
MnlI	CCTC	5 cut(s)	36, 293, 333, 367, 478
Mox20I	TGGCCA	1 cut(s)	261
MroXI	GAANNNNTTC	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	261
MseI	TTAA	3 cut(s)	60, 219, 636
MslI	CAYNNNNRTG	1 cut(s)	598
Msp20I	TGGCCA	1 cut(s)	261
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	2 cut(s)	142, 383
MunI	CAATTG	1 cut(s)	183
Mva1269I	GAATGC	1 cut(s)	545
MvaI	CCWGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	311
NciI	CCSGG	1 cut(s)	383
NdeII	GATC	7 cut(s)	31, 243, 352, 402, 408, 433, 487
NlaIII	CATG	2 cut(s)	359, 415
NmuCI	GTSAC	1 cut(s)	211
PctI	GAATGC	1 cut(s)	545
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	133
Ple19I	CGATCG	1 cut(s)	405
PleI	GAGTC	3 cut(s)	104, 121, 164
PpsI	GAGTC	3 cut(s)	104, 121, 164
PshBI	ATTAAT	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	140
PstNI	CAGNNNCTG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	243
PvuI	CGATCG	1 cut(s)	405
RseI	CAYNNNNRTG	1 cut(s)	598
SaqAI	TTAA	3 cut(s)	60, 219, 636
Sau3AI	GATC	7 cut(s)	31, 243, 352, 402, 408, 433, 487
SchI	GAGTC	3 cut(s)	104, 121, 164
ScrFI	CCNGG	2 cut(s)	142, 383
SduI	GDGCHC	2 cut(s)	388, 459
SfaNI	GCATC	1 cut(s)	457
SfcI	CTRYAG	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	598
Sse9I	AATT	5 cut(s)	183, 397, 648, 678, 695
SspMI	CTAG	3 cut(s)	204, 363, 560
StyD4I	CCNGG	2 cut(s)	140, 381
TaaI	ACNGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	401
TasI	AATT	5 cut(s)	183, 397, 648, 678, 695
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	3 cut(s)	60, 219, 636
Tru9I	TTAA	3 cut(s)	60, 219, 636
TscAI	CASTG	2 cut(s)	529, 547
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	3 cut(s)	17, 29, 704
TspRI	CASTG	2 cut(s)	529, 547
VspI	ATTAAT	1 cut(s)	60
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	158
XspI	CTAG	3 cut(s)	204, 363, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.