Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0016012

Physical Location & Seq

Genomic Coordinates Forward (+)

14665380 .. 14668317

Gene Structure 2938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g17190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAACCAGGAAATGAATGGGGTCGAAGCTGAGAGGTATCAGAAGGAGAATCTCAGCAATGGTCATCATATTTATGAGAAGATAGACTATGTGTTCAAGGTGGTGGTTATTGGAGACTCAGCTGTGGGGAAGACTCAGATACTGTCGAGGTTTACTAAGAACGAGTTCTGCTTCGATTCCAAGTCCACTATTGGGGTTGAGTTTCAGACCAGGACTGTTACCATTAAAGGGAAACTCGTCAAGGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTATCGAGCTGTTACAAGTGCATATTATAGAGGTGCACTCGGGGCGATGTTGGTGTACGACATAACCAAGAGGCCGACGTTCGATCACGTAGCCCGGTGGGTCGAGGAGCTCCGGGCACACGCGGACGCCTCGATTGTGATCATGCTGATTGGTAACAAGGCTGATCTCAGTGATCAGAGGAACGTTCCGACTGAAGACGCAGTTGAGTTTGCTGAGGAGCAAGAGCTGTTCTTCTCCGAGACATCGGCCTTCAGCGGCAACAATGTGGACAGTGCATTCTTTAGAGTACTAGAGGAGGTGTACAGTAGAGTGACGTCTAAGAAAGCACTGGAATGTGGGGATGGGAAAAGGCCCATTGATGGGGTTGGAGCAAAAATTGATGTCATTTCTGGGTCTGATTTGGAAATTAGTGAGATGAAGAAGTTGTCTGCTTGCTCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0031410 GO:0031982 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071840 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

240

Amino Acids

26.72

Weight (kDa)

5.39

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	31 - 190	1.3e-13	ADP-ribosylation factor family
Ras	PF00071	33 - 193	5.1e-60	Ras family
Roc	PF08477	33 - 147	1.7e-33	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01200
fragaria_vesca	FvH4_7g17190
malus_domestica	MD01G1085800.v1.1 MD07G1154900.v1.1
prunus_persica	Prupe.2G193600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360581
rosa_laevigata	RLG00000027796
rosa_multiflora	Rmu_sc0003481.1_g000008
rosa_roxburghii	Rroxscaffold_4G00295980
rosa_rugosa	Rorug01G0280000
rosa_samantha	Rh1AG292000 Rh1BG256900 Rh1CG274800 Rh1DG286900
rosa_wichuraiana	Rw1G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	593
AccII	CGCG	1 cut(s)	398
AciI	CCGC	2 cut(s)	398, 531
AclI	AACGTT	1 cut(s)	459
AcoI	YGGCCR	1 cut(s)	265
AcuI	CTGAAG	2 cut(s)	489, 511
AcyI	GRCGYC	2 cut(s)	402, 590
AfaI	GTAC	3 cut(s)	332, 564, 578
AfiI	CCNNNNNNNGG	4 cut(s)	192, 228, 635, 636
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	2 cut(s)	6, 209
AluBI	AGCT	5 cut(s)	29, 122, 284, 385, 502
AluI	AGCT	5 cut(s)	29, 122, 284, 385, 502
Alw21I	GWGCWC	2 cut(s)	313, 387
Alw26I	GTCTC	2 cut(s)	108, 509
Alw44I	GTGCAC	1 cut(s)	309
AlwNI	CAGNNNCTG	1 cut(s)	142
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	4 cut(s)	265, 347, 522, 626
ApaLI	GTGCAC	1 cut(s)	309
Asp700I	GAANNNNTTC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	627
AsuC2I	CCSGG	2 cut(s)	370, 389
AvaI	CYCGRG	1 cut(s)	314
BaeGI	GKGCMC	2 cut(s)	313, 394
BalI	TGGCCA	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	387
BbsI	GAAGAC	2 cut(s)	137, 477
Bbv12I	GWGCWC	2 cut(s)	313, 387
BbvCI	CCTCAGC	1 cut(s)	489
BccI	CCATC	2 cut(s)	611, 629
BciT130I	CCWGG	2 cut(s)	8, 211
BciVI	GTATCC	1 cut(s)	250
BclI	TGATCA	2 cut(s)	414, 448
BcnI	CCSGG	2 cut(s)	370, 389
BcoDI	GTCTC	2 cut(s)	108, 509
BfaI	CTAG	1 cut(s)	566
BfuI	GTATCC	1 cut(s)	250
BglII	AGATCT	1 cut(s)	249
BisI	GCNGC	1 cut(s)	532
BlsI	GCNGC	1 cut(s)	533
BmcAI	AGTACT	1 cut(s)	564
Bme1390I	CCNGG	4 cut(s)	8, 211, 370, 389
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	627
BmrFI	CCNGG	4 cut(s)	8, 211, 370, 389
BpiI	GAAGAC	2 cut(s)	137, 477
BplI	GAGNNNNNCTC	2 cut(s)	297, 329
Bpu10I	CCTNAGC	1 cut(s)	489
BpuMI	CCSGG	2 cut(s)	370, 389
BsaAI	YACGTR	1 cut(s)	364
BsaBI	GATNNNNATC	1 cut(s)	413
BsaHI	GRCGYC	2 cut(s)	402, 590
Bsc4I	CCNNNNNNNGG	4 cut(s)	192, 228, 635, 636
Bse1I	ACTGG	1 cut(s)	609
Bse3DI	GCAATG	1 cut(s)	64
Bse8I	GATNNNNATC	1 cut(s)	413
BseBI	CCWGG	2 cut(s)	8, 211
BseGI	GGATG	1 cut(s)	622
BseJI	GATNNNNATC	1 cut(s)	413
BseLI	CCNNNNNNNGG	4 cut(s)	192, 228, 635, 636
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	7 cut(s)	21, 67, 132, 149, 260, 457, 480
BseNI	ACTGG	1 cut(s)	609
BseRI	GAGGAG	3 cut(s)	395, 506, 584
BseSI	GKGCMC	2 cut(s)	313, 394
Bsh1236I	CGCG	1 cut(s)	398
BshFI	GGCC	4 cut(s)	267, 349, 524, 628
BsiHKAI	GWGCWC	2 cut(s)	313, 387
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	2 cut(s)	370, 388
BslI	CCNNNNNNNGG	4 cut(s)	192, 228, 635, 636
BsmAI	GTCTC	2 cut(s)	108, 509
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	4 cut(s)	267, 349, 524, 628
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	3 cut(s)	313, 387, 394
Bsp1407I	TGTACA	1 cut(s)	576
Bsp143I	GATC	5 cut(s)	249, 358, 414, 439, 448
BspACI	CCGC	2 cut(s)	398, 531
BspANI	GGCC	4 cut(s)	267, 349, 524, 628
BspCNI	CTCAG	7 cut(s)	22, 66, 131, 148, 259, 456, 481
BspFNI	CGCG	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	64
BsrGI	TGTACA	1 cut(s)	576
BsrI	ACTGG	1 cut(s)	609
BssMI	GATC	5 cut(s)	249, 358, 414, 439, 448
BssNI	GRCGYC	2 cut(s)	402, 590
Bst2UI	CCWGG	2 cut(s)	8, 211
Bst4CI	ACNGT	4 cut(s)	144, 217, 548, 581
BstACI	GRCGYC	2 cut(s)	402, 590
BstAUI	TGTACA	1 cut(s)	576
BstBAI	YACGTR	1 cut(s)	364
BstC8I	GCNNGC	2 cut(s)	265, 709
BstDEI	CTNAG	9 cut(s)	30, 53, 118, 135, 156, 246, 443, 489, 594
BstF5I	GGATG	1 cut(s)	622
BstFNI	CGCG	1 cut(s)	398
BstKTI	GATC	5 cut(s)	252, 361, 417, 442, 451
BstMAI	GTCTC	2 cut(s)	108, 509
BstMBI	GATC	5 cut(s)	249, 358, 414, 439, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	2 cut(s)	8, 211
BstSCI	CCNGG	4 cut(s)	6, 209, 368, 387
BstSLI	GKGCMC	2 cut(s)	313, 394
BstUI	CGCG	1 cut(s)	398
BstV2I	GAAGAC	2 cut(s)	137, 477
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BsuI	GTATCC	1 cut(s)	250
BsuRI	GGCC	4 cut(s)	267, 349, 524, 628
BtgZI	GCGATG	1 cut(s)	335
BtsCI	GGATG	1 cut(s)	622
BtsIMutI	CAGTG	3 cut(s)	451, 553, 602
Cac8I	GCNNGC	2 cut(s)	265, 709
CaiI	CAGNNNCTG	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	627
CseI	GACGC	2 cut(s)	410, 482
Csp6I	GTAC	3 cut(s)	331, 563, 577
CviAII	CATG	1 cut(s)	418
CviQI	GTAC	3 cut(s)	331, 563, 577
DdeI	CTNAG	9 cut(s)	30, 53, 118, 135, 156, 246, 443, 489, 594
DpnI	GATC	5 cut(s)	251, 360, 416, 441, 450
DpnII	GATC	5 cut(s)	249, 358, 414, 439, 448
EaeI	YGGCCR	1 cut(s)	265
Ecl136II	GAGCTC	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	387
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	2 cut(s)	489, 511
Eco88I	CYCGRG	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	385
EcoRII	CCWGG	2 cut(s)	6, 209
EcoT38I	GRGCYC	1 cut(s)	387
FaeI	CATG	1 cut(s)	421
FaiI	YATR	7 cut(s)	69, 75, 90, 298, 303, 338, 419
FatI	CATG	1 cut(s)	417
FbaI	TGATCA	2 cut(s)	414, 448
Fnu4HI	GCNGC	1 cut(s)	532
FokI	GGATG	1 cut(s)	629
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	1 cut(s)	532
FspBI	CTAG	1 cut(s)	566
GluI	GCNGC	1 cut(s)	532
HaeIII	GGCC	4 cut(s)	267, 349, 524, 628
HapII	CCGG	2 cut(s)	370, 388
HgaI	GACGC	2 cut(s)	410, 482
Hin1I	GRCGYC	2 cut(s)	402, 590
Hin1II	CATG	1 cut(s)	421
HinfI	GANTC	4 cut(s)	49, 116, 133, 176
HpaII	CCGG	2 cut(s)	370, 388
Hpy166II	GTNNAC	6 cut(s)	153, 186, 311, 331, 544, 577
Hpy188I	TCNGA	8 cut(s)	42, 138, 207, 249, 453, 465, 514, 673
Hpy8I	GTNNAC	6 cut(s)	153, 186, 311, 331, 544, 577
Hpy99I	CGWCG	1 cut(s)	355
HpyAV	CCTTC	2 cut(s)	37, 535
HpyCH4III	ACNGT	4 cut(s)	144, 217, 548, 581
HpyCH4IV	ACGT	4 cut(s)	353, 363, 459, 590
HpyCH4V	TGCA	3 cut(s)	296, 311, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	9 cut(s)	30, 53, 118, 135, 156, 246, 443, 489, 594
HpySE526I	ACGT	4 cut(s)	353, 363, 459, 590
Hsp92I	GRCGYC	2 cut(s)	402, 590
Hsp92II	CATG	1 cut(s)	421
Ksp22I	TGATCA	2 cut(s)	414, 448
Kzo9I	GATC	5 cut(s)	249, 358, 414, 439, 448
LmnI	GCTCC	4 cut(s)	382, 390, 493, 644
LpnPI	CCDG	9 cut(s)	20, 196, 223, 238, 249, 383, 401, 590, 651
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	4 cut(s)	353, 363, 459, 590
MaeIII	GTNAC	4 cut(s)	217, 286, 428, 586
MalI	GATC	5 cut(s)	251, 360, 416, 441, 450
MboI	GATC	5 cut(s)	249, 358, 414, 439, 448
MboII	GAAGA	5 cut(s)	91, 142, 482, 499, 706
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	3 cut(s)	313, 387, 394
MlsI	TGGCCA	1 cut(s)	267
MluCI	AATT	2 cut(s)	651, 681
MluNI	TGGCCA	1 cut(s)	267
MlyI	GAGTC	2 cut(s)	110, 127
MmeI	TCCRAC	2 cut(s)	488, 622
Mox20I	TGGCCA	1 cut(s)	267
MroXI	GAANNNNTTC	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	267
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	2 cut(s)	72, 607
Msp20I	TGGCCA	1 cut(s)	267
MspA1I	CMGCKG	2 cut(s)	122, 531
MspI	CCGG	2 cut(s)	370, 388
MspR9I	CCNGG	4 cut(s)	8, 211, 370, 389
Mva1269I	GAATGC	1 cut(s)	551
MvaI	CCWGG	2 cut(s)	8, 211
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	1 cut(s)	317
NciI	CCSGG	2 cut(s)	370, 389
NdeII	GATC	5 cut(s)	249, 358, 414, 439, 448
NlaIII	CATG	1 cut(s)	421
NmuCI	GTSAC	1 cut(s)	586
PctI	GAATGC	1 cut(s)	551
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	2 cut(s)	49, 176
PkrI	GCNGC	1 cut(s)	533
PleI	GAGTC	2 cut(s)	110, 127
PpsI	GAGTC	2 cut(s)	110, 127
Ppu21I	YACGTR	1 cut(s)	364
Psp124BI	GAGCTC	1 cut(s)	387
Psp1406I	AACGTT	1 cut(s)	459
Psp6I	CCWGG	2 cut(s)	6, 209
PspGI	CCWGG	2 cut(s)	6, 209
PspPI	GGNCC	1 cut(s)	627
PstNI	CAGNNNCTG	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	249
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	3 cut(s)	332, 564, 578
RsaNI	GTAC	3 cut(s)	331, 563, 577
RseI	CAYNNNNRTG	2 cut(s)	72, 607
SacI	GAGCTC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	1 cut(s)	532
Sau3AI	GATC	5 cut(s)	249, 358, 414, 439, 448
Sau96I	GGNCC	1 cut(s)	627
ScaI	AGTACT	1 cut(s)	564
SchI	GAGTC	2 cut(s)	110, 127
ScrFI	CCNGG	4 cut(s)	8, 211, 370, 389
SduI	GDGCHC	3 cut(s)	313, 387, 394
SmiMI	CAYNNNNRTG	2 cut(s)	72, 607
Sse9I	AATT	2 cut(s)	651, 681
SsiI	CCGC	2 cut(s)	398, 531
SspMI	CTAG	1 cut(s)	566
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	4 cut(s)	6, 209, 368, 387
TaaI	ACNGT	4 cut(s)	144, 217, 548, 581
TaiI	ACGT	4 cut(s)	356, 366, 462, 593
TaqI	TCGA	7 cut(s)	24, 146, 174, 280, 357, 378, 407
TasI	AATT	2 cut(s)	651, 681
TatI	WGTACW	2 cut(s)	562, 576
TauI	GCSGC	1 cut(s)	534
TfiI	GAWTC	2 cut(s)	49, 176
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	3 cut(s)	451, 553, 609
TseFI	GTSAC	1 cut(s)	586
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	3 cut(s)	17, 29, 707
TspRI	CASTG	3 cut(s)	451, 553, 609
VneI	GTGCAC	1 cut(s)	309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	1 cut(s)	566
ZraI	GACGTC	1 cut(s)	591
ZrmI	AGTACT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.