Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0016012

Physical Location & Seq

Genomic Coordinates Forward (+)

22471132 .. 22473736

Gene Structure 2605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1154900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAACCAAGAAATGAATGGGGTAGAGGCGGAGTTGACGGCTGCGGAGAGGGCGGAGAGTGAGAGGGTGAGGAAGGAGATTAGTGTTATGAATGGACATGAAAGGATAGATTATGTGTTCAAGGTGGTGGTGATTGGGGACTCGGCAGTTGGAAAGACTCAGATTCTGTCGAGGTTTACAAAGAATGAATTCTGCTTCGACTCCAAGTCCACAATTGGGGTGGAGTTCCAAACTAGGACTCTCACCATTCAAGGCAAACTCATCAAGGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTATAGGGCAGTTACAAGTGCATACTACCGGGGTGCATTAGGAGCAATGCTGGTGTACGACATCACCAAGAGGCGGACCTTTGATCATGTAGCTAGATGGGTTGAGGAGCTCCGGACCCACGCCGACAGTTCGATCGTGATCATGCTGATCGGGAACAAGGCCGATCTTGGGGACGAGAGGGATGTGCCCACAGAAGATGCAGTTGAGTTTGCTGAGGAGCAAGGGCTTTTCTTCTCAGAGACATCAGCCTTCAGTGGTGACAATGTGGACACTGCATTCTTTAGGGTTTTTGAGGAAATATATGGTGTGGTGTCTAAGAAGGCATTGGAATGTAGCAATGGGATAAAATCCAATGGGGTTGATCTTAAAGGGGCAAAAATTGATATTATTTCTGGGTCTGATTTGGAAATTAGTGAGATTAAAAAACTGTCTGCTTGCTCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0031410 GO:0031982 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071840 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

249

Amino Acids

27.6

Weight (kDa)

5.05

Isoelectric Point (pI)

28.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	37 - 197	5.1e-13	ADP-ribosylation factor family
Ras	PF00071	41 - 201	1.5e-59	Ras family
Roc	PF08477	41 - 155	8e-34	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01200
fragaria_vesca	FvH4_7g17190
malus_domestica	MD01G1085800.v1.1 MD07G1154900.v1.1
prunus_persica	Prupe.2G193600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360581
rosa_laevigata	RLG00000027796
rosa_multiflora	Rmu_sc0003481.1_g000008
rosa_roxburghii	Rroxscaffold_4G00295980
rosa_rugosa	Rorug01G0280000
rosa_samantha	Rh1AG292000 Rh1BG256900 Rh1CG274800 Rh1DG286900
rosa_wichuraiana	Rw1G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	411
AciI	CCGC	4 cut(s)	29, 44, 53, 373
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	535
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	3 cut(s)	216, 372, 468
AgsI	TTSAA	2 cut(s)	121, 251
AhdI	GACNNNNNGTC	1 cut(s)	205
AluBI	AGCT	2 cut(s)	392, 409
AluI	AGCT	2 cut(s)	392, 409
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	1 cut(s)	533
AlwNI	CAGNNNCTG	1 cut(s)	166
Aor13HI	TCCGGA	1 cut(s)	411
AoxI	GGCC	2 cut(s)	289, 459
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	188
Asp700I	GAANNNNTTC	1 cut(s)	188
AspS9I	GGNCC	2 cut(s)	375, 414
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	5 cut(s)	79, 142, 235, 355, 569
AvaII	GGWCC	2 cut(s)	375, 414
BaeGI	GKGCMC	1 cut(s)	489
BalI	TGGCCA	1 cut(s)	291
BanII	GRGCYC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	411
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	390
BceAI	ACGGC	1 cut(s)	54
BciVI	GTATCC	1 cut(s)	274
BclI	TGATCA	2 cut(s)	382, 438
BcnI	CCSGG	1 cut(s)	329
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	2 cut(s)	234, 393
BfuI	GTATCC	1 cut(s)	274
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	2 cut(s)	375, 414
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	375, 414
BmiI	GGNNCC	1 cut(s)	416
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	1 cut(s)	487
Bpu10I	CCTNAGC	1 cut(s)	513
BpuMI	CCSGG	1 cut(s)	329
BsaBI	GATNNNNATC	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	328
BsaWI	WCCGGW	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 372, 468
Bse3DI	GCAATG	2 cut(s)	351, 643
Bse8I	GATNNNNATC	1 cut(s)	437
BseAI	TCCGGA	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	1 cut(s)	487
BseJI	GATNNNNATC	1 cut(s)	437
BseLI	CCNNNNNNNGG	3 cut(s)	216, 372, 468
BseMI	GCAATG	2 cut(s)	351, 643
BseMII	CTCAG	4 cut(s)	173, 284, 504, 549
BseRI	GAGGAG	2 cut(s)	419, 530
BseSI	GKGCMC	1 cut(s)	489
BseXI	GCAGC	1 cut(s)	28
Bsh1285I	CGRYCG	1 cut(s)	435
BshFI	GGCC	2 cut(s)	291, 461
BsiEI	CGRYCG	1 cut(s)	435
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	2 cut(s)	328, 412
BslFI	GGGAC	2 cut(s)	152, 485
BslI	CCNNNNNNNGG	3 cut(s)	216, 372, 468
BsmAI	GTCTC	1 cut(s)	533
BsmFI	GGGAC	2 cut(s)	152, 485
BsmI	GAATGC	1 cut(s)	575
BsnI	GGCC	2 cut(s)	291, 461
Bsp1286I	GDGCHC	2 cut(s)	411, 489
Bsp13I	TCCGGA	1 cut(s)	411
Bsp143I	GATC	7 cut(s)	273, 382, 432, 438, 447, 463, 661
BspACI	CCGC	4 cut(s)	29, 44, 53, 373
BspANI	GGCC	2 cut(s)	291, 461
BspCNI	CTCAG	4 cut(s)	172, 283, 505, 548
BspEI	TCCGGA	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	416
BsrDI	GCAATG	2 cut(s)	351, 643
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	7 cut(s)	273, 382, 432, 438, 447, 463, 661
Bst4CI	ACNGT	2 cut(s)	428, 729
BstC8I	GCNNGC	2 cut(s)	289, 736
BstDEI	CTNAG	5 cut(s)	159, 270, 513, 535, 615
BstF5I	GGATG	1 cut(s)	487
BstKTI	GATC	7 cut(s)	276, 385, 435, 441, 450, 466, 664
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	7 cut(s)	273, 382, 432, 438, 447, 463, 661
BstMCI	CGRYCG	1 cut(s)	435
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 341
BstSCI	CCNGG	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	489
BstV1I	GCAGC	1 cut(s)	28
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BsuI	GTATCC	1 cut(s)	274
BsuRI	GGCC	2 cut(s)	291, 461
BtsCI	GGATG	1 cut(s)	487
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	2 cut(s)	559, 570
Cac8I	GCNNGC	2 cut(s)	289, 736
CaiI	CAGNNNCTG	1 cut(s)	166
Cfr13I	GGNCC	2 cut(s)	375, 414
Csp6I	GTAC	1 cut(s)	355
CspCI	CAANNNNNGTGG	2 cut(s)	201, 236
CviAII	CATG	3 cut(s)	98, 386, 442
CviJI	RGCY	8 cut(s)	41, 269, 291, 392, 409, 461, 526, 548
CviKI_1	RGCY	8 cut(s)	41, 269, 291, 392, 409, 461, 526, 548
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	5 cut(s)	159, 270, 513, 535, 615
DpnI	GATC	7 cut(s)	275, 384, 434, 440, 449, 465, 663
DpnII	GATC	7 cut(s)	273, 382, 432, 438, 447, 463, 661
DriI	GACNNNNNGTC	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	289
Eam1105I	GACNNNNNGTC	1 cut(s)	205
EciI	GGCGGA	3 cut(s)	44, 68, 388
Ecl136II	GAGCTC	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	411
Eco47I	GGWCC	2 cut(s)	375, 414
Eco53kI	GAGCTC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	535
EcoICRI	GAGCTC	1 cut(s)	409
EcoRI	GAATTC	1 cut(s)	188
EcoT38I	GRGCYC	1 cut(s)	411
FaeI	CATG	3 cut(s)	101, 389, 445
FaiI	YATR	9 cut(s)	89, 99, 114, 303, 322, 387, 443, 601, 603
FaqI	GGGAC	2 cut(s)	152, 485
FatI	CATG	3 cut(s)	97, 385, 441
FbaI	TGATCA	2 cut(s)	382, 438
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	1 cut(s)	494
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	2 cut(s)	234, 393
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	291, 461
HapII	CCGG	2 cut(s)	328, 412
Hin1II	CATG	3 cut(s)	101, 389, 445
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HinfI	GANTC	5 cut(s)	140, 157, 163, 200, 238
HpaII	CCGG	2 cut(s)	328, 412
HphI	GGTGA	5 cut(s)	79, 142, 235, 355, 569
Hpy166II	GTNNAC	5 cut(s)	36, 177, 210, 355, 568
Hpy188I	TCNGA	4 cut(s)	162, 273, 538, 700
Hpy188III	TCNNGA	3 cut(s)	412, 436, 451
Hpy8I	GTNNAC	5 cut(s)	36, 177, 210, 355, 568
HpyAV	CCTTC	3 cut(s)	67, 559, 613
HpyCH4III	ACNGT	2 cut(s)	428, 729
HpyCH4V	TGCA	4 cut(s)	320, 335, 500, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 341
HpyF3I	CTNAG	5 cut(s)	159, 270, 513, 535, 615
Hsp92II	CATG	3 cut(s)	101, 389, 445
Kpn2I	TCCGGA	1 cut(s)	411
Ksp22I	TGATCA	2 cut(s)	382, 438
Kzo9I	GATC	7 cut(s)	273, 382, 432, 438, 447, 463, 661
LmnI	GCTCC	4 cut(s)	341, 406, 414, 517
LpnPI	CCDG	6 cut(s)	262, 273, 335, 341, 425, 678
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	1 cut(s)	487
MaeI	CTAG	2 cut(s)	234, 393
MaeIII	GTNAC	2 cut(s)	310, 557
MalI	GATC	7 cut(s)	275, 384, 434, 440, 449, 465, 663
MboI	GATC	7 cut(s)	273, 382, 432, 438, 447, 463, 661
MboII	GAAGA	2 cut(s)	506, 523
MfeI	CAATTG	1 cut(s)	213
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	2 cut(s)	411, 489
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	4 cut(s)	188, 213, 678, 708
MluNI	TGGCCA	1 cut(s)	291
MlyI	GAGTC	4 cut(s)	134, 151, 194, 232
MmeI	TCCRAC	1 cut(s)	130
Mox20I	TGGCCA	1 cut(s)	291
MroI	TCCGGA	1 cut(s)	411
MroXI	GAANNNNTTC	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	291
MseI	TTAA	3 cut(s)	666, 720, 745
MslI	CAYNNNNRTG	1 cut(s)	628
Msp20I	TGGCCA	1 cut(s)	291
MspI	CCGG	2 cut(s)	328, 412
MspR9I	CCNGG	1 cut(s)	329
MunI	CAATTG	1 cut(s)	213
Mva1269I	GAATGC	1 cut(s)	575
MwoI	GCNNNNNNNGC	2 cut(s)	50, 341
NciI	CCSGG	1 cut(s)	329
NdeII	GATC	7 cut(s)	273, 382, 432, 438, 447, 463, 661
NlaIII	CATG	3 cut(s)	101, 389, 445
NlaIV	GGNNCC	1 cut(s)	416
NmeAIII	GCCGAG	1 cut(s)	122
NmuCI	GTSAC	1 cut(s)	557
PctI	GAATGC	1 cut(s)	575
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	43
Ple19I	CGATCG	1 cut(s)	435
PleI	GAGTC	4 cut(s)	134, 151, 194, 232
PpsI	GAGTC	4 cut(s)	134, 151, 194, 232
Psp124BI	GAGCTC	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	416
PspPI	GGNCC	2 cut(s)	375, 414
PstNI	CAGNNNCTG	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	273
PvuI	CGATCG	1 cut(s)	435
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	628
SacI	GAGCTC	1 cut(s)	411
SaqAI	TTAA	3 cut(s)	666, 720, 745
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	7 cut(s)	273, 382, 432, 438, 447, 463, 661
Sau96I	GGNCC	2 cut(s)	375, 414
SchI	GAGTC	4 cut(s)	134, 151, 194, 232
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	2 cut(s)	411, 489
SetI	ASST	6 cut(s)	126, 176, 302, 380, 394, 411
SfaNI	GCATC	1 cut(s)	487
SinI	GGWCC	2 cut(s)	375, 414
SmiMI	CAYNNNNRTG	1 cut(s)	628
Sse9I	AATT	4 cut(s)	188, 213, 678, 708
SsiI	CCGC	4 cut(s)	29, 44, 53, 373
SspMI	CTAG	2 cut(s)	234, 393
SstI	GAGCTC	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	428, 729
TaqI	TCGA	3 cut(s)	170, 198, 431
TasI	AATT	4 cut(s)	188, 213, 678, 708
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	3 cut(s)	666, 720, 745
Tru9I	TTAA	3 cut(s)	666, 720, 745
TscAI	CASTG	2 cut(s)	559, 577
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	5 cut(s)	17, 29, 104, 114, 201
TspRI	CASTG	2 cut(s)	559, 577
VpaK11BI	GGWCC	2 cut(s)	375, 414
XapI	RAATTY	1 cut(s)	188
XcmI	CCANNNNNNNNNTGG	2 cut(s)	14, 217
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	2 cut(s)	234, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.