Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0016012

Physical Location & Seq

Genomic Coordinates Forward (+)

19235693 .. 19237703

Gene Structure 2011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1085800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAACCAAGAAATGAATGGGGTGGATGCGGAGGCGACGGCGGCGGAGAGGGCGGAGAGAGAGAGGGTGAGGAGGGAGATGAGTGTTATGAATGGACATGAAAAGATAGATTATGTGTTCAAGGTGGTGGTGATTGGAGACTCGGCAGTTGGGAAGACTCAGATTCTGTCGAGGTTTACAAAGAACGAGTTCTGCTTTGACTCCAAGTCCACAATTGGGGTTGAGTTCCAGACCAGGACTCTCACCATTCAAGGAAAACTCATCAAGGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTATAGGGCGGTTACAAGTGCATACTACAGAGGTGCGTTAGGGGCAATGCTGGTGTACGATATCACCAAGAGGCAGACCTTCGATCATGTAGCTAGATGGGTTGAGGAGCTGCGGGCCCATTCTGACAGTTCGATCGTGATCATGCTGATCGGGAACAAGGCCGATCTGGGGGACCAGAGGGCTGTGCCGACAGAAGATGCAGTTGAATTTGCTGAGGAGCAGGGGCTGTTCTTCTCAGAGACATCAGCCTTCAGTGGTGACAATGTGGACTCTGCATTCTTTAGGGTTCTTGAGGAAATATATGGTGTGGTGTCTAAGAAGGCATTGGAATGTGGCAATGAGATAAAATCCAATGGGGTTGATCTTAAAGGGGAAAAAATTGATGTTATTTCTGGTTCGGAATTGGAAATTAGTGAGATGAAGAAATTGTCTGCTTGCTCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0031410 GO:0031982 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071840 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

249

Amino Acids

27.61

Weight (kDa)

5.06

Isoelectric Point (pI)

31.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	35 - 197	2e-13	ADP-ribosylation factor family
Ras	PF00071	41 - 201	6e-60	Ras family
Roc	PF08477	41 - 155	1.2e-33	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01200
fragaria_vesca	FvH4_7g17190
malus_domestica	MD01G1085800.v1.1 MD07G1154900.v1.1
prunus_persica	Prupe.2G193600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360581
rosa_laevigata	RLG00000027796
rosa_multiflora	Rmu_sc0003481.1_g000008
rosa_roxburghii	Rroxscaffold_4G00295980
rosa_rugosa	Rorug01G0280000
rosa_samantha	Rh1AG292000 Rh1BG256900 Rh1CG274800 Rh1DG286900
rosa_wichuraiana	Rw1G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	29, 41, 44, 53, 308, 412
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	506
AcuI	CTGAAG	1 cut(s)	535
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	2 cut(s)	216, 468
AgsI	TTSAA	3 cut(s)	121, 251, 506
AhdI	GACNNNNNGTC	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	2 cut(s)	392, 409
AluI	AGCT	2 cut(s)	392, 409
Alw26I	GTCTC	2 cut(s)	132, 533
AlwNI	CAGNNNCTG	2 cut(s)	166, 526
AoxI	GGCC	3 cut(s)	289, 414, 459
ApaI	GGGCCC	1 cut(s)	418
ApeKI	GCWGC	1 cut(s)	409
ApoI	RAATTY	1 cut(s)	506
Asp700I	GAANNNNTTC	1 cut(s)	188
AspS9I	GGNCC	3 cut(s)	414, 415, 472
AsuHPI	GGTGA	5 cut(s)	79, 142, 235, 355, 569
AvaII	GGWCC	1 cut(s)	472
BaeGI	GKGCMC	1 cut(s)	418
BalI	TGGCCA	1 cut(s)	291
BanII	GRGCYC	1 cut(s)	418
BbsI	GAAGAC	1 cut(s)	161
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	1 cut(s)	390
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	235
BciVI	GTATCC	1 cut(s)	274
BclI	TGATCA	1 cut(s)	438
BcoDI	GTCTC	2 cut(s)	132, 533
BfaI	CTAG	1 cut(s)	393
BfmI	CTRYAG	1 cut(s)	325
BfuI	GTATCC	1 cut(s)	274
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	2 cut(s)	42, 410
BlsI	GCNGC	2 cut(s)	43, 411
Bme1390I	CCNGG	1 cut(s)	235
Bme18I	GGWCC	1 cut(s)	472
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmgT120I	GGNCC	3 cut(s)	414, 415, 472
BmiI	GGNNCC	2 cut(s)	416, 473
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	2 cut(s)	16, 487
BpiI	GAAGAC	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	611
BsaBI	GATNNNNATC	1 cut(s)	437
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 468
Bse3DI	GCAATG	2 cut(s)	351, 643
Bse8I	GATNNNNATC	1 cut(s)	437
BseBI	CCWGG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	31
BseJI	GATNNNNATC	1 cut(s)	437
BseLI	CCNNNNNNNGG	2 cut(s)	216, 468
BseMI	GCAATG	2 cut(s)	351, 643
BseMII	CTCAG	4 cut(s)	173, 284, 504, 549
BseRI	GAGGAG	3 cut(s)	85, 419, 530
BseSI	GKGCMC	1 cut(s)	418
BseXI	GCAGC	1 cut(s)	396
Bsh1285I	CGRYCG	1 cut(s)	435
BshFI	GGCC	3 cut(s)	291, 416, 461
BsiEI	CGRYCG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	485
BslI	CCNNNNNNNGG	2 cut(s)	216, 468
BsmAI	GTCTC	2 cut(s)	132, 533
BsmFI	GGGAC	1 cut(s)	485
BsmI	GAATGC	1 cut(s)	575
BsnI	GGCC	3 cut(s)	291, 416, 461
Bsp120I	GGGCCC	1 cut(s)	414
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	7 cut(s)	273, 382, 432, 438, 447, 463, 661
BspACI	CCGC	6 cut(s)	29, 41, 44, 53, 308, 412
BspANI	GGCC	3 cut(s)	291, 416, 461
BspCNI	CTCAG	4 cut(s)	172, 283, 505, 548
BspLI	GGNNCC	2 cut(s)	416, 473
BsrDI	GCAATG	2 cut(s)	351, 643
BssMI	GATC	7 cut(s)	273, 382, 432, 438, 447, 463, 661
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	428
BstC8I	GCNNGC	3 cut(s)	289, 414, 736
BstDEI	CTNAG	5 cut(s)	159, 270, 513, 535, 615
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	7 cut(s)	276, 385, 435, 441, 450, 466, 664
BstMAI	GTCTC	2 cut(s)	132, 533
BstMBI	GATC	7 cut(s)	273, 382, 432, 438, 447, 463, 661
BstMCI	CGRYCG	1 cut(s)	435
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 50, 341
BstNI	CCWGG	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	325
BstSLI	GKGCMC	1 cut(s)	418
BstV1I	GCAGC	1 cut(s)	396
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BsuI	GTATCC	1 cut(s)	274
BsuRI	GGCC	3 cut(s)	291, 416, 461
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	559
Cac8I	GCNNGC	3 cut(s)	289, 414, 736
CaiI	CAGNNNCTG	2 cut(s)	166, 526
Cfr13I	GGNCC	3 cut(s)	414, 415, 472
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	3 cut(s)	98, 386, 442
CviJI	RGCY	9 cut(s)	269, 291, 392, 409, 416, 461, 482, 526, 548
CviKI_1	RGCY	9 cut(s)	269, 291, 392, 409, 416, 461, 482, 526, 548
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	5 cut(s)	159, 270, 513, 535, 615
DpnI	GATC	7 cut(s)	275, 384, 434, 440, 449, 465, 663
DpnII	GATC	7 cut(s)	273, 382, 432, 438, 447, 463, 661
DriI	GACNNNNNGTC	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	289
Eam1105I	GACNNNNNGTC	1 cut(s)	205
EciI	GGCGGA	2 cut(s)	59, 68
Eco24I	GRGCYC	1 cut(s)	418
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	472
Eco57I	CTGAAG	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	233
EcoRV	GATATC	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	418
FaeI	CATG	3 cut(s)	101, 389, 445
FaiI	YATR	9 cut(s)	89, 99, 114, 303, 322, 387, 443, 601, 603
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	3 cut(s)	97, 385, 441
FauI	CCCGC	1 cut(s)	405
FbaI	TGATCA	1 cut(s)	438
Fnu4HI	GCNGC	2 cut(s)	42, 410
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	2 cut(s)	42, 410
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	2 cut(s)	42, 410
HaeIII	GGCC	3 cut(s)	291, 416, 461
Hin1II	CATG	3 cut(s)	101, 389, 445
HinfI	GANTC	6 cut(s)	140, 157, 163, 200, 238, 569
HphI	GGTGA	5 cut(s)	79, 142, 235, 355, 569
Hpy166II	GTNNAC	4 cut(s)	177, 210, 355, 568
Hpy188I	TCNGA	5 cut(s)	162, 273, 424, 538, 700
Hpy188III	TCNNGA	4 cut(s)	229, 436, 451, 590
Hpy8I	GTNNAC	4 cut(s)	177, 210, 355, 568
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	3 cut(s)	388, 559, 613
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4V	TGCA	3 cut(s)	320, 500, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 50, 341
HpyF3I	CTNAG	5 cut(s)	159, 270, 513, 535, 615
Hsp92II	CATG	3 cut(s)	101, 389, 445
Ksp22I	TGATCA	1 cut(s)	438
Kzo9I	GATC	7 cut(s)	273, 382, 432, 438, 447, 463, 661
LmnI	GCTCC	2 cut(s)	406, 517
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	2 cut(s)	16, 487
MaeI	CTAG	1 cut(s)	393
MaeIII	GTNAC	2 cut(s)	310, 557
MalI	GATC	7 cut(s)	275, 384, 434, 440, 449, 465, 663
MboI	GATC	7 cut(s)	273, 382, 432, 438, 447, 463, 661
MboII	GAAGA	4 cut(s)	166, 506, 523, 733
MfeI	CAATTG	1 cut(s)	213
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	418
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	6 cut(s)	213, 506, 678, 701, 708, 725
MluNI	TGGCCA	1 cut(s)	291
MlyI	GAGTC	5 cut(s)	134, 151, 194, 232, 563
Mox20I	TGGCCA	1 cut(s)	291
MroXI	GAANNNNTTC	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	291
MseI	TTAA	2 cut(s)	666, 745
MslI	CAYNNNNRTG	1 cut(s)	628
Msp20I	TGGCCA	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	235
MunI	CAATTG	1 cut(s)	213
Mva1269I	GAATGC	1 cut(s)	575
MvaI	CCWGG	1 cut(s)	235
MwoI	GCNNNNNNNGC	3 cut(s)	41, 50, 341
NdeII	GATC	7 cut(s)	273, 382, 432, 438, 447, 463, 661
NlaIII	CATG	3 cut(s)	101, 389, 445
NlaIV	GGNNCC	2 cut(s)	416, 473
NmeAIII	GCCGAG	1 cut(s)	122
NmuCI	GTSAC	1 cut(s)	557
PctI	GAATGC	1 cut(s)	575
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	43, 411
Ple19I	CGATCG	1 cut(s)	435
PleI	GAGTC	5 cut(s)	134, 151, 194, 232, 563
PpsI	GAGTC	5 cut(s)	134, 151, 194, 232, 563
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	2 cut(s)	416, 473
PspOMI	GGGCCC	1 cut(s)	414
PspPI	GGNCC	3 cut(s)	414, 415, 472
PstNI	CAGNNNCTG	2 cut(s)	166, 526
PsuI	RGATCY	1 cut(s)	273
PvuI	CGATCG	1 cut(s)	435
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	628
SaqAI	TTAA	2 cut(s)	666, 745
SatI	GCNGC	2 cut(s)	42, 410
Sau3AI	GATC	7 cut(s)	273, 382, 432, 438, 447, 463, 661
Sau96I	GGNCC	3 cut(s)	414, 415, 472
SchI	GAGTC	5 cut(s)	134, 151, 194, 232, 563
ScrFI	CCNGG	1 cut(s)	235
SduI	GDGCHC	1 cut(s)	418
SetI	ASST	7 cut(s)	126, 176, 302, 334, 380, 394, 411
SfaNI	GCATC	2 cut(s)	16, 487
SfcI	CTRYAG	1 cut(s)	325
SinI	GGWCC	1 cut(s)	472
SmiMI	CAYNNNNRTG	1 cut(s)	628
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	6 cut(s)	213, 506, 678, 701, 708, 725
SsiI	CCGC	6 cut(s)	29, 41, 44, 53, 308, 412
SspMI	CTAG	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	233
TaaI	ACNGT	1 cut(s)	428
TaqI	TCGA	3 cut(s)	170, 381, 431
TasI	AATT	6 cut(s)	213, 506, 678, 701, 708, 725
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	2 cut(s)	666, 745
Tru9I	TTAA	2 cut(s)	666, 745
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	1 cut(s)	409
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	5 cut(s)	17, 29, 104, 114, 734
TspRI	CASTG	1 cut(s)	559
VpaK11BI	GGWCC	1 cut(s)	472
XapI	RAATTY	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.