Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003481.1

Orthogroup ID

OG0016012

Physical Location & Seq

Genomic Coordinates Forward (+)

22728 .. 24907

Gene Structure 2180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003481.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atgaatggggttgaagctgagaggtatcagaaggagaatctcagcaatggtcatcatgttcaggagaagatagactatgtgttcaaggtggtggttattggagactcagctgtggggaagactcagatactgtcgaggtttactaagaatgagttttgcttcgactccaagtctactattggggttgagtttcagaccaggagtgtcactattagagggaaactcatcaaggcccagatctgggatactgctggccaagaaaggtatcgagctgttacaagtgcctattacagaggtgcactcggggcaatgcttgtatacgacatcaccaagaggccgacgttcgatcatgtggctaggtgggtcgaggagctccgggcacatgcggacagctcgatcgtcatcatgctcatcgggaacaaggctgatcttggggatcagaggaatgttccgactgaagatgcagtcgagtttgccgaggagcaagagctgttcttctctgagacatcggccttcagcggcaacaatgtggacagtgcattctttagggtactagaggagatatacagtagagtgacgtctaaaaaagcactcgaatgtgggaatgggaagaagcccattgatgggactggagcaaaaattgatgtcatttctgggtctgatttggaaattagcgagatgaagaagttgtctgcttgctcttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0031410 GO:0031982 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071840 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

235

Amino Acids

26.17

Weight (kDa)

5.69

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01200
fragaria_vesca	FvH4_7g17190
malus_domestica	MD01G1085800.v1.1 MD07G1154900.v1.1
prunus_persica	Prupe.2G193600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360581
rosa_laevigata	RLG00000027796
rosa_multiflora	Rmu_sc0003481.1_g000008
rosa_roxburghii	Rroxscaffold_4G00295980
rosa_rugosa	Rorug01G0280000
rosa_samantha	Rh1AG292000 Rh1BG256900 Rh1CG274800 Rh1DG286900
rosa_wichuraiana	Rw1G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	581
AccI	GTMKAC	2 cut(s)	173, 318
AciI	CCGC	2 cut(s)	386, 519
AclWI	GGATC	1 cut(s)	444
AcoI	YGGCCR	1 cut(s)	253
AcuI	CTGAAG	2 cut(s)	477, 499
AcyI	GRCGYC	1 cut(s)	578
AfaI	GTAC	1 cut(s)	552
AfiI	CCNNNNNNNGG	4 cut(s)	240, 241, 623, 624
AgsI	TTSAA	2 cut(s)	14, 85
AhdI	GACNNNNNGTC	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	197
AluBI	AGCT	6 cut(s)	17, 110, 272, 373, 393, 490
AluI	AGCT	6 cut(s)	17, 110, 272, 373, 393, 490
Alw21I	GWGCWC	2 cut(s)	301, 375
Alw26I	GTCTC	2 cut(s)	96, 497
Alw44I	GTGCAC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	444
AlwNI	CAGNNNCTG	1 cut(s)	130
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	4 cut(s)	231, 253, 335, 510
ApaLI	GTGCAC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	377
AsuHPI	GGTGA	1 cut(s)	319
AvaI	CYCGRG	1 cut(s)	302
BaeGI	GKGCMC	2 cut(s)	301, 382
BalI	TGGCCA	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	125
Bbv12I	GWGCWC	2 cut(s)	301, 375
BccI	CCATC	1 cut(s)	617
BciT130I	CCWGG	1 cut(s)	199
BciVI	GTATCC	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	377
BcoDI	GTCTC	2 cut(s)	96, 497
BfaI	CTAG	2 cut(s)	357, 554
BfuI	GTATCC	1 cut(s)	238
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	1 cut(s)	520
BlsI	GCNGC	1 cut(s)	521
Bme1390I	CCNGG	2 cut(s)	199, 377
BmeRI	GACNNNNNGTC	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	232
BmrFI	CCNGG	2 cut(s)	199, 377
BmsI	GCATC	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	125
BplI	GAGNNNNNCTC	4 cut(s)	207, 239, 285, 317
BpmI	CTGGAG	1 cut(s)	651
BpuMI	CCSGG	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	401
BsaHI	GRCGYC	1 cut(s)	578
BsaJI	CCNNGG	1 cut(s)	477
Bsc4I	CCNNNNNNNGG	4 cut(s)	240, 241, 623, 624
Bse1I	ACTGG	1 cut(s)	634
Bse3DI	GCAATG	2 cut(s)	52, 315
Bse8I	GATNNNNATC	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	477
BseJI	GATNNNNATC	1 cut(s)	401
BseLI	CCNNNNNNNGG	4 cut(s)	240, 241, 623, 624
BseMI	GCAATG	2 cut(s)	52, 315
BseMII	CTCAG	5 cut(s)	9, 55, 120, 137, 492
BseNI	ACTGG	1 cut(s)	634
BseRI	GAGGAG	3 cut(s)	383, 494, 572
BseSI	GKGCMC	2 cut(s)	301, 382
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	4 cut(s)	233, 255, 337, 512
BsiEI	CGRYCG	1 cut(s)	399
BsiHKAI	GWGCWC	2 cut(s)	301, 375
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	376
BslFI	GGGAC	1 cut(s)	640
BslI	CCNNNNNNNGG	4 cut(s)	240, 241, 623, 624
BsmAI	GTCTC	2 cut(s)	96, 497
BsmFI	GGGAC	1 cut(s)	640
BsmI	GAATGC	1 cut(s)	539
BsnI	GGCC	4 cut(s)	233, 255, 337, 512
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	3 cut(s)	301, 375, 382
Bsp143I	GATC	5 cut(s)	237, 346, 396, 427, 436
BspACI	CCGC	2 cut(s)	386, 519
BspANI	GGCC	4 cut(s)	233, 255, 337, 512
BspCNI	CTCAG	5 cut(s)	10, 54, 119, 136, 493
BspPI	GGATC	1 cut(s)	444
BsrDI	GCAATG	2 cut(s)	52, 315
BsrI	ACTGG	1 cut(s)	634
BssECI	CCNNGG	1 cut(s)	477
BssMI	GATC	5 cut(s)	237, 346, 396, 427, 436
BssNAI	GTATAC	1 cut(s)	319
BssNI	GRCGYC	1 cut(s)	578
Bst1107I	GTATAC	1 cut(s)	319
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	3 cut(s)	132, 536, 569
BstACI	GRCGYC	1 cut(s)	578
BstC8I	GCNNGC	2 cut(s)	253, 697
BstDEI	CTNAG	6 cut(s)	18, 41, 106, 123, 144, 501
BstKTI	GATC	5 cut(s)	240, 349, 399, 430, 439
BstMAI	GTCTC	2 cut(s)	96, 497
BstMBI	GATC	5 cut(s)	237, 346, 396, 427, 436
BstMCI	CGRYCG	1 cut(s)	399
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNI	CCWGG	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	2 cut(s)	197, 375
BstSLI	GKGCMC	2 cut(s)	301, 382
BstV2I	GAAGAC	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BstZ17I	GTATAC	1 cut(s)	319
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	4 cut(s)	233, 255, 337, 512
BtsIMutI	CAGTG	1 cut(s)	541
Cac8I	GCNNGC	2 cut(s)	253, 697
CaiI	CAGNNNCTG	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	551
CviAII	CATG	4 cut(s)	56, 350, 383, 406
CviQI	GTAC	1 cut(s)	551
DdeI	CTNAG	6 cut(s)	18, 41, 106, 123, 144, 501
DpnI	GATC	5 cut(s)	239, 348, 398, 429, 438
DpnII	GATC	5 cut(s)	237, 346, 396, 427, 436
DriI	GACNNNNNGTC	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	253
Eam1105I	GACNNNNNGTC	1 cut(s)	169
Ecl136II	GAGCTC	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	375
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	2 cut(s)	477, 499
Eco88I	CYCGRG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	375
FaeI	CATG	4 cut(s)	59, 353, 386, 409
FaiI	YATR	7 cut(s)	57, 78, 319, 351, 384, 407, 565
FaqI	GGGAC	1 cut(s)	640
FatI	CATG	4 cut(s)	55, 349, 382, 405
FblI	GTMKAC	2 cut(s)	173, 318
Fnu4HI	GCNGC	1 cut(s)	520
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	520
FspBI	CTAG	2 cut(s)	357, 554
GluI	GCNGC	1 cut(s)	520
GsuI	CTGGAG	1 cut(s)	651
HaeIII	GGCC	4 cut(s)	233, 255, 337, 512
HapII	CCGG	1 cut(s)	376
Hin1I	GRCGYC	1 cut(s)	578
Hin1II	CATG	4 cut(s)	59, 353, 386, 409
HinfI	GANTC	4 cut(s)	37, 104, 121, 164
HpaII	CCGG	1 cut(s)	376
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	5 cut(s)	141, 174, 299, 319, 532
Hpy188I	TCNGA	7 cut(s)	30, 126, 195, 441, 453, 502, 661
Hpy188III	TCNNGA	2 cut(s)	62, 415
Hpy8I	GTNNAC	5 cut(s)	141, 174, 299, 319, 532
Hpy99I	CGWCG	1 cut(s)	343
HpyAV	CCTTC	2 cut(s)	25, 523
HpyCH4III	ACNGT	3 cut(s)	132, 536, 569
HpyCH4IV	ACGT	2 cut(s)	341, 578
HpyCH4V	TGCA	3 cut(s)	299, 464, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	6 cut(s)	18, 41, 106, 123, 144, 501
HpySE526I	ACGT	2 cut(s)	341, 578
Hsp92I	GRCGYC	1 cut(s)	578
Hsp92II	CATG	4 cut(s)	59, 353, 386, 409
Kzo9I	GATC	5 cut(s)	237, 346, 396, 427, 436
LmnI	GCTCC	4 cut(s)	370, 378, 481, 632
LpnPI	CCDG	9 cut(s)	47, 184, 211, 226, 237, 248, 389, 615, 639
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	2 cut(s)	357, 554
MaeII	ACGT	2 cut(s)	341, 578
MaeIII	GTNAC	3 cut(s)	205, 274, 574
MalI	GATC	5 cut(s)	239, 348, 398, 429, 438
MboI	GATC	5 cut(s)	237, 346, 396, 427, 436
MboII	GAAGA	6 cut(s)	79, 130, 470, 487, 622, 694
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	3 cut(s)	301, 375, 382
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	2 cut(s)	639, 669
MluNI	TGGCCA	1 cut(s)	255
MlyI	GAGTC	3 cut(s)	98, 115, 158
MmeI	TCCRAC	1 cut(s)	476
MnlI	CCTC	9 cut(s)	15, 129, 209, 287, 327, 361, 435, 472, 550
Mox20I	TGGCCA	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	255
MslI	CAYNNNNRTG	1 cut(s)	595
Msp20I	TGGCCA	1 cut(s)	255
MspA1I	CMGCKG	2 cut(s)	110, 519
MspI	CCGG	1 cut(s)	376
MspR9I	CCNGG	2 cut(s)	199, 377
Mva1269I	GAATGC	1 cut(s)	539
MvaI	CCWGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	305
NciI	CCSGG	1 cut(s)	377
NdeII	GATC	5 cut(s)	237, 346, 396, 427, 436
NlaIII	CATG	4 cut(s)	59, 353, 386, 409
NmeAIII	GCCGAG	1 cut(s)	502
NmuCI	GTSAC	2 cut(s)	205, 574
NspI	RCATGY	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	1 cut(s)	474
PctI	GAATGC	1 cut(s)	539
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	521
Ple19I	CGATCG	1 cut(s)	399
PleI	GAGTC	3 cut(s)	98, 115, 158
PpsI	GAGTC	3 cut(s)	98, 115, 158
Psp124BI	GAGCTC	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
PspPI	GGNCC	1 cut(s)	232
PstNI	CAGNNNCTG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	237
PvuI	CGATCG	1 cut(s)	399
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
RseI	CAYNNNNRTG	1 cut(s)	595
SacI	GAGCTC	1 cut(s)	375
SatI	GCNGC	1 cut(s)	520
Sau3AI	GATC	5 cut(s)	237, 346, 396, 427, 436
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	3 cut(s)	98, 115, 158
ScrFI	CCNGG	2 cut(s)	199, 377
SduI	GDGCHC	3 cut(s)	301, 375, 382
SfaNI	GCATC	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	595
Sse9I	AATT	2 cut(s)	639, 669
SsiI	CCGC	2 cut(s)	386, 519
SspMI	CTAG	2 cut(s)	357, 554
SstI	GAGCTC	1 cut(s)	375
StyD4I	CCNGG	2 cut(s)	197, 375
TaaI	ACNGT	3 cut(s)	132, 536, 569
TaiI	ACGT	2 cut(s)	344, 581
TaqI	TCGA	8 cut(s)	134, 162, 268, 345, 366, 395, 468, 594
TasI	AATT	2 cut(s)	639, 669
TauI	GCSGC	1 cut(s)	522
TfiI	GAWTC	1 cut(s)	37
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	2 cut(s)	205, 574
Tsp45I	GTSAC	2 cut(s)	205, 574
TspDTI	ATGAA	2 cut(s)	17, 695
TspRI	CASTG	1 cut(s)	541
VneI	GTGCAC	1 cut(s)	297
XceI	RCATGY	1 cut(s)	386
XmiI	GTMKAC	2 cut(s)	173, 318
XspI	CTAG	2 cut(s)	357, 554
ZraI	GACGTC	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.