Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0016012

Physical Location & Seq

Genomic Coordinates Forward (+)

52640452 .. 52643183

Gene Structure 2732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G025860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAACCAGGAAATGAATGGGGTTGAAGCTGAGAGGTATCAGAAGGAGAATCTCAGCAATGGTCATCATGTTCAGGAGAAGATAGACTATGTGTTCAAGGTGGTGGTTATTGGAGACTCAGCTGTGGGGAAGACTCAGATACTGTCGAGGTTTACTAAGAATGAGTTTTGCTTCGACTCCAAGTCTACTATTGGGGTTGAGTTTCAGACCAGGAGTGTCACTATTAGAGGGAAACTCATCAAGGCCCAGATCTGGGATACTGCTGGCCAAGAAAGGTATCGAGCTGTTACAAGTGCCTATTACAGAGGTGCACTCGGGGCAATGCTGGTATACGACATCACCAAGAGGCCGACGTTCGATCATGTGGCTAGGTGGGTCGAGGAGCTCCGGGCACATGCAGACAGCTCGATCGTGATCATGCTGATCGGGAACAAGGCTGATCTCGGGGATCAGAGGAATGTTCCGACTGAAGATGCAGTCGAGTTTGCCGAGGAGCAAGAGCTGTTCTTCTCTGAGACATCGGCCTTCAGCGGCAACAATGTGGACAGTGCATTCTTTAGGGTACTAGAGGAGATATACAGTAGAGTGACGTCTAAAAAAGCACTGGAATGTGGGAATGGGAAGACGCCCATTGATGGGATTGGAGCAAAAATTGATGTCATTTCTGGGTCTGATTTGGAAATTAGCGAGATGAAGAAGTTGTCTGCTTGCTCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0031410 GO:0031982 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071840 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

239

Amino Acids

26.66

Weight (kDa)

5.38

Isoelectric Point (pI)

30.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	31 - 190	6.2e-13	ADP-ribosylation factor family
Ras	PF00071	33 - 193	1.2e-59	Ras family
Roc	PF08477	33 - 147	2.5e-33	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01200
fragaria_vesca	FvH4_7g17190
malus_domestica	MD01G1085800.v1.1 MD07G1154900.v1.1
prunus_persica	Prupe.2G193600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360581
rosa_laevigata	RLG00000027796
rosa_multiflora	Rmu_sc0003481.1_g000008
rosa_roxburghii	Rroxscaffold_4G00295980
rosa_rugosa	Rorug01G0280000
rosa_samantha	Rh1AG292000 Rh1BG256900 Rh1CG274800 Rh1DG286900
rosa_wichuraiana	Rw1G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	593
AccI	GTMKAC	2 cut(s)	185, 330
AciI	CCGC	1 cut(s)	531
AclWI	GGATC	1 cut(s)	456
AcoI	YGGCCR	1 cut(s)	265
AcuI	CTGAAG	2 cut(s)	489, 511
AcyI	GRCGYC	2 cut(s)	590, 626
AfaI	GTAC	1 cut(s)	564
AfiI	CCNNNNNNNGG	4 cut(s)	252, 253, 635, 636
AgsI	TTSAA	2 cut(s)	26, 97
AhdI	GACNNNNNGTC	1 cut(s)	181
AjnI	CCWGG	2 cut(s)	6, 209
AluBI	AGCT	6 cut(s)	29, 122, 284, 385, 405, 502
AluI	AGCT	6 cut(s)	29, 122, 284, 385, 405, 502
Alw21I	GWGCWC	2 cut(s)	313, 387
Alw26I	GTCTC	2 cut(s)	108, 509
Alw44I	GTGCAC	1 cut(s)	309
AlwI	GGATC	1 cut(s)	456
AlwNI	CAGNNNCTG	1 cut(s)	142
Ama87I	CYCGRG	2 cut(s)	314, 443
AoxI	GGCC	4 cut(s)	243, 265, 347, 522
ApaLI	GTGCAC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	244
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	331
AvaI	CYCGRG	2 cut(s)	314, 443
BaeGI	GKGCMC	2 cut(s)	313, 394
BalI	TGGCCA	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	387
BbsI	GAAGAC	2 cut(s)	137, 629
Bbv12I	GWGCWC	2 cut(s)	313, 387
BccI	CCATC	1 cut(s)	629
BcgI	CGANNNNNNTGC	2 cut(s)	387, 421
BciT130I	CCWGG	2 cut(s)	8, 211
BciVI	GTATCC	1 cut(s)	250
BclI	TGATCA	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	2 cut(s)	108, 509
BfaI	CTAG	2 cut(s)	369, 566
BfuI	GTATCC	1 cut(s)	250
BglII	AGATCT	1 cut(s)	249
BisI	GCNGC	1 cut(s)	532
BlsI	GCNGC	1 cut(s)	533
Bme1390I	CCNGG	3 cut(s)	8, 211, 389
BmeRI	GACNNNNNGTC	1 cut(s)	181
BmeT110I	CYCGRG	2 cut(s)	314, 443
BmgT120I	GGNCC	1 cut(s)	244
BmrFI	CCNGG	3 cut(s)	8, 211, 389
BmsI	GCATC	1 cut(s)	463
BpiI	GAAGAC	2 cut(s)	137, 629
BplI	GAGNNNNNCTC	4 cut(s)	219, 251, 297, 329
BpuMI	CCSGG	1 cut(s)	389
BsaBI	GATNNNNATC	1 cut(s)	413
BsaHI	GRCGYC	2 cut(s)	590, 626
BsaJI	CCNNGG	1 cut(s)	489
Bsc4I	CCNNNNNNNGG	4 cut(s)	252, 253, 635, 636
Bse1I	ACTGG	1 cut(s)	609
Bse3DI	GCAATG	2 cut(s)	64, 327
Bse8I	GATNNNNATC	1 cut(s)	413
BseBI	CCWGG	2 cut(s)	8, 211
BseDI	CCNNGG	1 cut(s)	489
BseJI	GATNNNNATC	1 cut(s)	413
BseLI	CCNNNNNNNGG	4 cut(s)	252, 253, 635, 636
BseMI	GCAATG	2 cut(s)	64, 327
BseMII	CTCAG	5 cut(s)	21, 67, 132, 149, 504
BseNI	ACTGG	1 cut(s)	609
BseRI	GAGGAG	3 cut(s)	395, 506, 584
BseSI	GKGCMC	2 cut(s)	313, 394
Bsh1285I	CGRYCG	1 cut(s)	411
BshFI	GGCC	4 cut(s)	245, 267, 349, 524
BsiEI	CGRYCG	1 cut(s)	411
BsiHKAI	GWGCWC	2 cut(s)	313, 387
BsiHKCI	CYCGRG	2 cut(s)	314, 443
BsiSI	CCGG	1 cut(s)	388
BslI	CCNNNNNNNGG	4 cut(s)	252, 253, 635, 636
BsmAI	GTCTC	2 cut(s)	108, 509
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	4 cut(s)	245, 267, 349, 524
BsoBI	CYCGRG	2 cut(s)	314, 443
Bsp1286I	GDGCHC	3 cut(s)	313, 387, 394
Bsp143I	GATC	7 cut(s)	249, 358, 408, 414, 423, 439, 448
BspACI	CCGC	1 cut(s)	531
BspANI	GGCC	4 cut(s)	245, 267, 349, 524
BspCNI	CTCAG	5 cut(s)	22, 66, 131, 148, 505
BspPI	GGATC	1 cut(s)	456
BsrDI	GCAATG	2 cut(s)	64, 327
BsrI	ACTGG	1 cut(s)	609
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	7 cut(s)	249, 358, 408, 414, 423, 439, 448
BssNAI	GTATAC	1 cut(s)	331
BssNI	GRCGYC	2 cut(s)	590, 626
Bst1107I	GTATAC	1 cut(s)	331
Bst2UI	CCWGG	2 cut(s)	8, 211
Bst4CI	ACNGT	3 cut(s)	144, 548, 581
BstACI	GRCGYC	2 cut(s)	590, 626
BstC8I	GCNNGC	2 cut(s)	265, 709
BstDEI	CTNAG	6 cut(s)	30, 53, 118, 135, 156, 513
BstKTI	GATC	7 cut(s)	252, 361, 411, 417, 426, 442, 451
BstMAI	GTCTC	2 cut(s)	108, 509
BstMBI	GATC	7 cut(s)	249, 358, 408, 414, 423, 439, 448
BstMCI	CGRYCG	1 cut(s)	411
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	2 cut(s)	8, 211
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	3 cut(s)	6, 209, 387
BstSLI	GKGCMC	2 cut(s)	313, 394
BstV2I	GAAGAC	2 cut(s)	137, 629
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BstZ17I	GTATAC	1 cut(s)	331
BsuI	GTATCC	1 cut(s)	250
BsuRI	GGCC	4 cut(s)	245, 267, 349, 524
BtsIMutI	CAGTG	2 cut(s)	553, 602
Cac8I	GCNNGC	2 cut(s)	265, 709
CaiI	CAGNNNCTG	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	244
CseI	GACGC	1 cut(s)	634
Csp6I	GTAC	1 cut(s)	563
CviAII	CATG	4 cut(s)	68, 362, 395, 418
CviQI	GTAC	1 cut(s)	563
DdeI	CTNAG	6 cut(s)	30, 53, 118, 135, 156, 513
DpnI	GATC	7 cut(s)	251, 360, 410, 416, 425, 441, 450
DpnII	GATC	7 cut(s)	249, 358, 408, 414, 423, 439, 448
DriI	GACNNNNNGTC	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	265
Eam1105I	GACNNNNNGTC	1 cut(s)	181
Ecl136II	GAGCTC	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	387
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	2 cut(s)	489, 511
Eco88I	CYCGRG	2 cut(s)	314, 443
EcoICRI	GAGCTC	1 cut(s)	385
EcoRII	CCWGG	2 cut(s)	6, 209
EcoT38I	GRGCYC	1 cut(s)	387
FaeI	CATG	4 cut(s)	71, 365, 398, 421
FaiI	YATR	7 cut(s)	69, 90, 331, 363, 396, 419, 577
FatI	CATG	4 cut(s)	67, 361, 394, 417
FbaI	TGATCA	1 cut(s)	414
FblI	GTMKAC	2 cut(s)	185, 330
Fnu4HI	GCNGC	1 cut(s)	532
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	1 cut(s)	532
FspBI	CTAG	2 cut(s)	369, 566
GluI	GCNGC	1 cut(s)	532
HaeIII	GGCC	4 cut(s)	245, 267, 349, 524
HapII	CCGG	1 cut(s)	388
HgaI	GACGC	1 cut(s)	634
Hin1I	GRCGYC	2 cut(s)	590, 626
Hin1II	CATG	4 cut(s)	71, 365, 398, 421
HinfI	GANTC	4 cut(s)	49, 116, 133, 176
HpaII	CCGG	1 cut(s)	388
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	5 cut(s)	153, 186, 311, 331, 544
Hpy188I	TCNGA	7 cut(s)	42, 138, 207, 453, 465, 514, 673
Hpy188III	TCNNGA	3 cut(s)	74, 412, 427
Hpy8I	GTNNAC	5 cut(s)	153, 186, 311, 331, 544
Hpy99I	CGWCG	1 cut(s)	355
HpyAV	CCTTC	2 cut(s)	37, 535
HpyCH4III	ACNGT	3 cut(s)	144, 548, 581
HpyCH4IV	ACGT	2 cut(s)	353, 590
HpyCH4V	TGCA	4 cut(s)	311, 398, 476, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	6 cut(s)	30, 53, 118, 135, 156, 513
HpySE526I	ACGT	2 cut(s)	353, 590
Hsp92I	GRCGYC	2 cut(s)	590, 626
Hsp92II	CATG	4 cut(s)	71, 365, 398, 421
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	7 cut(s)	249, 358, 408, 414, 423, 439, 448
LmnI	GCTCC	4 cut(s)	382, 390, 493, 644
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	2 cut(s)	369, 566
MaeII	ACGT	2 cut(s)	353, 590
MaeIII	GTNAC	3 cut(s)	217, 286, 586
MalI	GATC	7 cut(s)	251, 360, 410, 416, 425, 441, 450
MboI	GATC	7 cut(s)	249, 358, 408, 414, 423, 439, 448
MboII	GAAGA	6 cut(s)	91, 142, 482, 499, 634, 706
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	3 cut(s)	313, 387, 394
MlsI	TGGCCA	1 cut(s)	267
MluCI	AATT	2 cut(s)	651, 681
MluNI	TGGCCA	1 cut(s)	267
MlyI	GAGTC	3 cut(s)	110, 127, 170
MmeI	TCCRAC	1 cut(s)	488
MnlI	CCTC	9 cut(s)	27, 141, 221, 299, 339, 373, 447, 484, 562
Mox20I	TGGCCA	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	607
Msp20I	TGGCCA	1 cut(s)	267
MspA1I	CMGCKG	2 cut(s)	122, 531
MspI	CCGG	1 cut(s)	388
MspR9I	CCNGG	3 cut(s)	8, 211, 389
Mva1269I	GAATGC	1 cut(s)	551
MvaI	CCWGG	2 cut(s)	8, 211
MwoI	GCNNNNNNNGC	1 cut(s)	317
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	7 cut(s)	249, 358, 408, 414, 423, 439, 448
NlaIII	CATG	4 cut(s)	71, 365, 398, 421
NmeAIII	GCCGAG	1 cut(s)	514
NmuCI	GTSAC	2 cut(s)	217, 586
NspI	RCATGY	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	1 cut(s)	486
PctI	GAATGC	1 cut(s)	551
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	533
Ple19I	CGATCG	1 cut(s)	411
PleI	GAGTC	3 cut(s)	110, 127, 170
PpsI	GAGTC	3 cut(s)	110, 127, 170
Psp124BI	GAGCTC	1 cut(s)	387
Psp6I	CCWGG	2 cut(s)	6, 209
PspGI	CCWGG	2 cut(s)	6, 209
PspPI	GGNCC	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	249
PvuI	CGATCG	1 cut(s)	411
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	1 cut(s)	564
RsaNI	GTAC	1 cut(s)	563
RseI	CAYNNNNRTG	1 cut(s)	607
SacI	GAGCTC	1 cut(s)	387
SatI	GCNGC	1 cut(s)	532
Sau3AI	GATC	7 cut(s)	249, 358, 408, 414, 423, 439, 448
Sau96I	GGNCC	1 cut(s)	244
SchI	GAGTC	3 cut(s)	110, 127, 170
ScrFI	CCNGG	3 cut(s)	8, 211, 389
SduI	GDGCHC	3 cut(s)	313, 387, 394
SfaNI	GCATC	1 cut(s)	463
SmiMI	CAYNNNNRTG	1 cut(s)	607
Sse9I	AATT	2 cut(s)	651, 681
SsiI	CCGC	1 cut(s)	531
SspMI	CTAG	2 cut(s)	369, 566
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	3 cut(s)	6, 209, 387
TaaI	ACNGT	3 cut(s)	144, 548, 581
TaiI	ACGT	2 cut(s)	356, 593
TaqI	TCGA	7 cut(s)	146, 174, 280, 357, 378, 407, 480
TasI	AATT	2 cut(s)	651, 681
TauI	GCSGC	1 cut(s)	534
TfiI	GAWTC	1 cut(s)	49
TscAI	CASTG	2 cut(s)	553, 609
TseFI	GTSAC	2 cut(s)	217, 586
Tsp45I	GTSAC	2 cut(s)	217, 586
TspDTI	ATGAA	3 cut(s)	17, 29, 707
TspRI	CASTG	2 cut(s)	553, 609
VneI	GTGCAC	1 cut(s)	309
XceI	RCATGY	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14
XmiI	GTMKAC	2 cut(s)	185, 330
XspI	CTAG	2 cut(s)	369, 566
ZraI	GACGTC	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.