AT1G01225

NC domain-containing protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007810
Physical Location & Seq
Forward (+)
95935 .. 97407
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01225.1

Sequence Viewer

Length: 783 bp
ATGGGTTTGCTTACGAACAAGATTGAGAGAGAAGAGCTAAAGCCAGGAGATCACATCTATACTTACAGAGCAATCTTCGCTTATTCTCACCACGGAATCTTTGTCGGTGGGTCCAAAGTTGTTCATTTCAGACCTGAACACAACCCCATGGATTCATCAACATCATCAATATCATCATCTTCCTCTGAAGATATCTGTTCCATATTTCCTGATTGCGGTTTCAGACAACCGGACAGTGGAGTAGTCCTTTCTTGCTTAGACTGTTTCCTCAAGAACGGCTCACTCTACTGCTTCGAATATGGAGTCAGTCCATCGGTTTTCCTAACCAAAGTCCGCGGAGGGACTTGCACAACCGCGCAATCTGATACAACTGATTCAGTCATCCACAGGGCAATGTACCTTCTCCAAAACGGATTTGGCAACTACGACATTTTCAAGAACAACTGTGAGGATTTCGCGCTCTATTGCAAGACCGGTTTGCTTATAATGGATAAGCTCGGTGTAGGGAGAAGCGGTCAAGCTTCTTCAATTGTTGGTGCTCCTTTGGCTGCACTCCTCTCTTCTCCTTTCAAATTGCTTATTCCAAGTCCCATTGGTGTGGCAACAGTTACTGCTGGTATGTACTGTATGAGTCGCTATGCTACCGATATTGGTGTTAGAAGCGACGTCATTAAGGTCTCAGTTGAGGATTTGGCTCTCAACCTTGACGTAAAGACCATTGAGCAAGGTGAAGAAGAAGAAGAAGACGAAGAAGAAGATTCTGATACCGACTATGTTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

260

Amino Acids

28.4

Weight (kDa)

4.72

Isoelectric Point (pI)

53.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 160 3.3e-31 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
AatII GACGTC 1 cut(s) 669
AccII CGCG 3 cut(s) 336, 356, 458
AciI CCGC 5 cut(s) 216, 334, 336, 354, 513
AcuI CTGAAG 1 cut(s) 207
AcyI GRCGYC 1 cut(s) 666
AfaI GTAC 2 cut(s) 398, 623
AfiI CCNNNNNNNGG 2 cut(s) 215, 236
AgeI ACCGGT 1 cut(s) 473
AgsI TTSAA 3 cut(s) 436, 528, 571
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 3 cut(s) 37, 496, 521
AluI AGCT 3 cut(s) 37, 496, 521
Alw21I GWGCWC 1 cut(s) 541
Alw26I GTCTC 1 cut(s) 682
AlwNI CAGNNNCTG 1 cut(s) 611
ApeKI GCWGC 1 cut(s) 548
ArsI GACNNNNNNTTYG 2 cut(s) 288, 320
AsiGI ACCGGT 1 cut(s) 473
AspLEI GCGC 2 cut(s) 358, 460
AspS9I GGNCC 1 cut(s) 111
AsuHPI GGTGA 2 cut(s) 80, 740
AsuII TTCGAA 1 cut(s) 294
AvaII GGWCC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 750
Bbv12I GWGCWC 1 cut(s) 541
BbvI GCAGC 1 cut(s) 535
BccI CCATC 1 cut(s) 319
BceAI ACGGC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 682
BisI GCNGC 1 cut(s) 549
BlsI GCNGC 1 cut(s) 550
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 750
Bpu14I TTCGAA 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 254
BsaHI GRCGYC 1 cut(s) 666
BsaI GGTCTC 1 cut(s) 682
BsaJI CCNNGG 3 cut(s) 91, 147, 334
BsaWI WCCGGW 2 cut(s) 229, 473
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 236
Bse118I RCCGGY 1 cut(s) 473
Bse3DI GCAATG 1 cut(s) 399
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 3 cut(s) 91, 147, 334
BseGI GGATG 1 cut(s) 381
BseLI CCNNNNNNNGG 2 cut(s) 215, 236
BseMI GCAATG 1 cut(s) 399
BseMII CTCAG 1 cut(s) 693
BseRI GAGGAG 1 cut(s) 545
BseXI GCAGC 1 cut(s) 535
BsgI GTGCAG 1 cut(s) 534
Bsh1236I CGCG 3 cut(s) 336, 356, 458
BshTI ACCGGT 1 cut(s) 473
BsiHKAI GWGCWC 1 cut(s) 541
BsiSI CCGG 2 cut(s) 230, 474
BslFI GGGAC 2 cut(s) 355, 573
BslI CCNNNNNNNGG 2 cut(s) 215, 236
BsmAI GTCTC 1 cut(s) 682
BsmFI GGGAC 2 cut(s) 355, 573
Bso31I GGTCTC 1 cut(s) 682
Bsp119I TTCGAA 1 cut(s) 294
Bsp1286I GDGCHC 1 cut(s) 541
Bsp143I GATC 1 cut(s) 49
Bsp19I CCATGG 1 cut(s) 147
BspACI CCGC 5 cut(s) 216, 334, 336, 354, 513
BspCNI CTCAG 1 cut(s) 692
BspFNI CGCG 3 cut(s) 336, 356, 458
BspLI GGNNCC 1 cut(s) 112
BspQI GCTCTTC 1 cut(s) 27
BspT104I TTCGAA 1 cut(s) 294
BspTNI GGTCTC 1 cut(s) 682
BsrDI GCAATG 1 cut(s) 399
BsrFI RCCGGY 1 cut(s) 473
BssAI RCCGGY 1 cut(s) 473
BssECI CCNNGG 3 cut(s) 91, 147, 334
BssMI GATC 1 cut(s) 49
BssNI GRCGYC 1 cut(s) 666
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 5 cut(s) 236, 263, 446, 607, 626
Bst6I CTCTTC 2 cut(s) 27, 565
BstACI GRCGYC 1 cut(s) 666
BstBI TTCGAA 1 cut(s) 294
BstDEI CTNAG 2 cut(s) 256, 679
BstDSI CCRYGG 3 cut(s) 91, 147, 334
BstF5I GGATG 1 cut(s) 381
BstFNI CGCG 3 cut(s) 336, 356, 458
BstHHI GCGC 2 cut(s) 358, 460
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 1 cut(s) 682
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 2 cut(s) 77, 545
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstUI CGCG 3 cut(s) 336, 356, 458
BstV1I GCAGC 1 cut(s) 535
BstV2I GAAGAC 1 cut(s) 750
BstXI CCANNNNNNTGG 1 cut(s) 598
BtgI CCRYGG 3 cut(s) 91, 147, 334
BtsCI GGATG 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 241
CaiI CAGNNNCTG 1 cut(s) 611
CfoI GCGC 2 cut(s) 358, 460
Cfr10I RCCGGY 1 cut(s) 473
Cfr13I GGNCC 1 cut(s) 111
Cfr42I CCGCGG 1 cut(s) 337
Csp6I GTAC 2 cut(s) 397, 622
CspAI ACCGGT 1 cut(s) 473
CviAII CATG 1 cut(s) 148
CviJI RGCY 7 cut(s) 37, 43, 279, 496, 521, 548, 695
CviKI_1 RGCY 7 cut(s) 37, 43, 279, 496, 521, 548, 695
CviQI GTAC 2 cut(s) 397, 622
DdeI CTNAG 2 cut(s) 256, 679
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eam1104I CTCTTC 2 cut(s) 27, 565
EarI CTCTTC 2 cut(s) 27, 565
Eco130I CCWWGG 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 682
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 43
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 1 cut(s) 151
FaiI YATR 9 cut(s) 60, 149, 203, 300, 485, 620, 629, 639, 774
FaqI GGGAC 2 cut(s) 355, 573
FatI CATG 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 549
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 1 cut(s) 549
GlaI GCGC 2 cut(s) 357, 459
GluI GCNGC 1 cut(s) 549
HapII CCGG 2 cut(s) 230, 474
HhaI GCGC 2 cut(s) 358, 460
Hin1I GRCGYC 1 cut(s) 666
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 2 cut(s) 356, 458
HinP1I GCGC 2 cut(s) 356, 458
HindIII AAGCTT 1 cut(s) 519
HinfI GANTC 6 cut(s) 96, 152, 303, 374, 631, 758
HpaII CCGG 2 cut(s) 230, 474
HphI GGTGA 2 cut(s) 80, 740
Hpy188I TCNGA 5 cut(s) 131, 187, 224, 364, 763
Hpy188III TCNNGA 3 cut(s) 209, 271, 436
Hpy99I CGWCG 1 cut(s) 668
HpyAV CCTTC 1 cut(s) 410
HpyCH4III ACNGT 5 cut(s) 236, 263, 446, 607, 626
HpyCH4IV ACGT 2 cut(s) 666, 708
HpyCH4V TGCA 3 cut(s) 348, 468, 551
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 545
HpyF3I CTNAG 2 cut(s) 256, 679
HpySE526I ACGT 2 cut(s) 666, 708
Hsp92I GRCGYC 1 cut(s) 666
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 2 cut(s) 356, 458
KspI CCGCGG 1 cut(s) 337
Kzo9I GATC 1 cut(s) 49
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 544
LpnPI CCDG 8 cut(s) 30, 57, 147, 222, 243, 373, 487, 600
Lsp1109I GCAGC 1 cut(s) 535
MaeII ACGT 2 cut(s) 666, 708
MaeIII GTNAC 1 cut(s) 607
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MfeI CAATTG 1 cut(s) 528
MhlI GDGCHC 1 cut(s) 541
MluCI AATT 2 cut(s) 528, 572
MlyI GAGTC 2 cut(s) 312, 640
MnlI CCTC 6 cut(s) 193, 278, 332, 442, 566, 679
MseI TTAA 1 cut(s) 672
MslI CAYNNNNRTG 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 336
MspI CCGG 2 cut(s) 230, 474
MspR9I CCNGG 1 cut(s) 45
MunI CAATTG 1 cut(s) 528
MvaI CCWGG 1 cut(s) 45
MvnI CGCG 3 cut(s) 336, 356, 458
MwoI GCNNNNNNNGC 2 cut(s) 77, 545
NcoI CCATGG 1 cut(s) 147
NdeII GATC 1 cut(s) 49
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 112
NspV TTCGAA 1 cut(s) 294
PciSI GCTCTTC 1 cut(s) 27
PfeI GAWTC 4 cut(s) 96, 152, 374, 758
PinAI ACCGGT 1 cut(s) 473
PkrI GCNGC 1 cut(s) 550
PleI GAGTC 2 cut(s) 311, 639
PpsI GAGTC 2 cut(s) 311, 639
PsiI TTATAA 1 cut(s) 485
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 111
PstNI CAGNNNCTG 1 cut(s) 611
RsaI GTAC 2 cut(s) 398, 623
RsaNI GTAC 2 cut(s) 397, 622
RseI CAYNNNNRTG 1 cut(s) 596
SacII CCGCGG 1 cut(s) 337
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 1 cut(s) 549
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 1 cut(s) 111
SchI GAGTC 2 cut(s) 312, 640
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 1 cut(s) 541
Sfr303I CCGCGG 1 cut(s) 337
SfuI TTCGAA 1 cut(s) 294
SgrBI CCGCGG 1 cut(s) 337
SinI GGWCC 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 596
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 2 cut(s) 528, 572
SsiI CCGC 5 cut(s) 216, 334, 336, 354, 513
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 5 cut(s) 236, 263, 446, 607, 626
TaiI ACGT 2 cut(s) 669, 711
TaqI TCGA 1 cut(s) 294
TasI AATT 2 cut(s) 528, 572
TatI WGTACW 1 cut(s) 621
TfiI GAWTC 4 cut(s) 96, 152, 374, 758
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TscAI CASTG 1 cut(s) 241
TseI GCWGC 1 cut(s) 548
TspDTI ATGAA 2 cut(s) 113, 144
TspGWI ACGGA 2 cut(s) 108, 426
TspRI CASTG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 413
ZraI GACGTC 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.