Rh1CG273600

Lecithin retinol acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0007810
Physical Location & Seq
Reverse (-)
54054802 .. 54056887
2086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG273600.1

Sequence Viewer

Length: 756 bp
ATGGGTCTGCTGAGTAACAAAGTTGAGAGGGATGAGATCAAGCCAGGAGACCACATCTACACTTATAGAGCTGTCTTCACCTACTCTCACCATGGTATTTATCTCGGAGGAAGCAAGGTGGTGCATTTTACACCTGAGAAAAAGCCTAGTTCAAGCACTGGCAAATCTTATGATTCAATGTCCTGTCCCACCTTTCCTGACTGTGGATTCAGGCAACCCAATAGTGGTGTTGTCCTTTCATGCCTCGATTGCTTCCTGAGAAATGGATCCATTTACTGCTTTGAATATGGGGTTACCCCTTCAATTTTCCTATCCAAAGTACGGGGTGGCACATGCACCACTGCGACATCTGACTCCCCTGAATCTGTTATCCACCGTGCTATGTATCTTCTTCAGAATGGATTTGGCAATTACGACGTCTTTCAAAATAACTGTGAGGATTTTGCAATGTATTGCAAAACTGGTCTCCTGATAATGGATAAGCAGGGAGTCGGAAGAAGTGGCCAAGCTGCTTCCGTTATTGGTGCCCCACTGGCGGCCATGCTTTCTTCTCCTCTAACGTTGTTGATGCCAGGCCCAGTTGGTGTTGCTACCGCAACAGCCGGGATGTACTGTATGAGCAGGTATTCAACTGACATTGGTGTCCGAACTGATGTGATCAAGGTGGCCGTGGAGGATTTGGCTGTGAATTTGGGGTGGACAACTCACCATGAGGAAGAGGCCAAGGATACTGAAGCTCCTTTGATACAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

251

Amino Acids

27.2

Weight (kDa)

5.96

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 156 2.5e-32 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 641
AatII GACGTC 1 cut(s) 420
Acc36I ACCTGC 1 cut(s) 612
AccB1I GGYRCC 1 cut(s) 524
AciI CCGC 2 cut(s) 536, 594
AclI AACGTT 1 cut(s) 560
AclWI GGATC 2 cut(s) 261, 274
AcoI YGGCCR 3 cut(s) 502, 537, 666
AcsI RAATTY 1 cut(s) 688
AcuI CTGAAG 2 cut(s) 377, 753
AcyI GRCGYC 1 cut(s) 417
AfaI GTAC 2 cut(s) 321, 611
AfiI CCNNNNNNNGG 5 cut(s) 203, 224, 321, 475, 535
AgsI TTSAA 6 cut(s) 153, 177, 284, 303, 425, 630
AjnI CCWGG 2 cut(s) 43, 571
AluBI AGCT 4 cut(s) 71, 509, 737, 751
AluI AGCT 4 cut(s) 71, 509, 737, 751
Alw26I GTCTC 2 cut(s) 42, 470
AlwI GGATC 2 cut(s) 261, 274
AoxI GGCC 5 cut(s) 502, 537, 574, 666, 720
ApeKI GCWGC 1 cut(s) 509
ApoI RAATTY 1 cut(s) 688
AspS9I GGNCC 1 cut(s) 575
AsuC2I CCSGG 1 cut(s) 604
AsuHPI GGTGA 3 cut(s) 70, 80, 698
BaeGI GKGCMC 1 cut(s) 529
BaeI ACNNNNGTAYC 1 cut(s) 737
BalI TGGCCA 1 cut(s) 504
BamHI GGATCC 1 cut(s) 266
BanI GGYRCC 1 cut(s) 524
BbsI GAAGAC 1 cut(s) 67
BbvI GCAGC 1 cut(s) 496
BceAI ACGGC 1 cut(s) 653
BciT130I CCWGG 2 cut(s) 45, 573
BciVI GTATCC 1 cut(s) 721
BclI TGATCA 1 cut(s) 657
BcnI CCSGG 1 cut(s) 604
BcoDI GTCTC 2 cut(s) 42, 470
BfaI CTAG 1 cut(s) 147
BfuAI ACCTGC 1 cut(s) 612
BfuI GTATCC 1 cut(s) 721
BglI GCCNNNNNGGC 1 cut(s) 533
BisI GCNGC 2 cut(s) 510, 537
BlsI GCNGC 2 cut(s) 511, 538
Bme1390I CCNGG 3 cut(s) 45, 573, 604
BmgT120I GGNCC 1 cut(s) 575
BmiI GGNNCC 2 cut(s) 268, 526
BmrFI CCNGG 3 cut(s) 45, 573, 604
BmrI ACTGGG 1 cut(s) 572
BmsI GCATC 1 cut(s) 558
BmuI ACTGGG 1 cut(s) 572
BpiI GAAGAC 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 604
BsaHI GRCGYC 1 cut(s) 417
BsaI GGTCTC 2 cut(s) 42, 470
BsaJI CCNNGG 3 cut(s) 91, 669, 723
BsaXI ACNNNNNCTCC 2 cut(s) 721, 751
Bsc4I CCNNNNNNNGG 5 cut(s) 203, 224, 321, 475, 535
Bse1I ACTGG 4 cut(s) 163, 466, 537, 578
Bse3DI GCAATG 1 cut(s) 453
BseBI CCWGG 2 cut(s) 45, 573
BseDI CCNNGG 3 cut(s) 91, 669, 723
BseGI GGATG 2 cut(s) 37, 612
BseLI CCNNNNNNNGG 5 cut(s) 203, 224, 321, 475, 535
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 2 cut(s) 126, 248
BseNI ACTGG 4 cut(s) 163, 466, 537, 578
BseRI GAGGAG 1 cut(s) 543
BseSI GKGCMC 1 cut(s) 529
BseXI GCAGC 1 cut(s) 496
BshFI GGCC 5 cut(s) 504, 539, 576, 668, 722
BshNI GGYRCC 1 cut(s) 524
BsiSI CCGG 1 cut(s) 603
BslFI GGGAC 1 cut(s) 171
BslI CCNNNNNNNGG 5 cut(s) 203, 224, 321, 475, 535
BsmAI GTCTC 2 cut(s) 42, 470
BsmFI GGGAC 1 cut(s) 171
BsnI GGCC 5 cut(s) 504, 539, 576, 668, 722
Bso31I GGTCTC 2 cut(s) 42, 470
Bsp1286I GDGCHC 1 cut(s) 529
Bsp143I GATC 3 cut(s) 36, 266, 657
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 2 cut(s) 536, 594
BspANI GGCC 5 cut(s) 504, 539, 576, 668, 722
BspCNI CTCAG 2 cut(s) 127, 249
BspLI GGNNCC 2 cut(s) 268, 526
BspMI ACCTGC 1 cut(s) 612
BspPI GGATC 2 cut(s) 261, 274
BspT107I GGYRCC 1 cut(s) 524
BspTNI GGTCTC 2 cut(s) 42, 470
BsrDI GCAATG 1 cut(s) 453
BsrI ACTGG 4 cut(s) 163, 466, 537, 578
BssECI CCNNGG 3 cut(s) 91, 669, 723
BssMI GATC 3 cut(s) 36, 266, 657
BssNI GRCGYC 1 cut(s) 417
BssT1I CCWWGG 2 cut(s) 91, 723
Bst2UI CCWGG 2 cut(s) 45, 573
Bst4CI ACNGT 4 cut(s) 203, 377, 434, 614
Bst6I CTCTTC 1 cut(s) 711
BstACI GRCGYC 1 cut(s) 417
BstDEI CTNAG 3 cut(s) 11, 135, 257
BstDSI CCRYGG 2 cut(s) 91, 669
BstEII GGTNACC 1 cut(s) 292
BstF5I GGATG 2 cut(s) 37, 612
BstKTI GATC 3 cut(s) 39, 269, 660
BstMAI GTCTC 2 cut(s) 42, 470
BstMBI GATC 3 cut(s) 36, 266, 657
BstMWI GCNNNNNNNGC 2 cut(s) 249, 533
BstNI CCWGG 2 cut(s) 45, 573
BstNSI RCATGY 1 cut(s) 336
BstPI GGTNACC 1 cut(s) 292
BstSCI CCNGG 3 cut(s) 43, 571, 602
BstSLI GKGCMC 1 cut(s) 529
BstV1I GCAGC 1 cut(s) 496
BstV2I GAAGAC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BsuI GTATCC 1 cut(s) 721
BsuRI GGCC 5 cut(s) 504, 539, 576, 668, 722
BtgI CCRYGG 2 cut(s) 91, 669
BtsCI GGATG 2 cut(s) 37, 612
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 3 cut(s) 156, 339, 530
BveI ACCTGC 1 cut(s) 612
Cfr13I GGNCC 1 cut(s) 575
Csp6I GTAC 2 cut(s) 320, 610
CviAII CATG 5 cut(s) 92, 240, 333, 541, 710
CviQI GTAC 2 cut(s) 320, 610
DdeI CTNAG 3 cut(s) 11, 135, 257
DpnI GATC 3 cut(s) 38, 268, 659
DpnII GATC 3 cut(s) 36, 266, 657
DrdI GACNNNNNNGTC 1 cut(s) 641
DseDI GACNNNNNNGTC 1 cut(s) 641
EaeI YGGCCR 3 cut(s) 502, 537, 666
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
Eco130I CCWWGG 2 cut(s) 91, 723
Eco31I GGTCTC 2 cut(s) 42, 470
Eco57I CTGAAG 2 cut(s) 377, 753
Eco91I GGTNACC 1 cut(s) 292
EcoO65I GGTNACC 1 cut(s) 292
EcoRII CCWGG 2 cut(s) 43, 571
EcoT14I CCWWGG 2 cut(s) 91, 723
ErhI CCWWGG 2 cut(s) 91, 723
FaeI CATG 5 cut(s) 95, 243, 336, 544, 713
FaqI GGGAC 1 cut(s) 171
FatI CATG 5 cut(s) 91, 239, 332, 540, 709
FbaI TGATCA 1 cut(s) 657
Fnu4HI GCNGC 2 cut(s) 510, 537
FokI GGATG 2 cut(s) 44, 619
Fsp4HI GCNGC 2 cut(s) 510, 537
FspBI CTAG 1 cut(s) 147
GluI GCNGC 2 cut(s) 510, 537
HaeIII GGCC 5 cut(s) 504, 539, 576, 668, 722
HapII CCGG 1 cut(s) 603
Hin1I GRCGYC 1 cut(s) 417
Hin1II CATG 5 cut(s) 95, 243, 336, 544, 713
HinfI GANTC 5 cut(s) 173, 207, 353, 362, 489
HpaII CCGG 1 cut(s) 603
HphI GGTGA 3 cut(s) 70, 80, 698
Hpy166II GTNNAC 1 cut(s) 699
Hpy188I TCNGA 5 cut(s) 107, 352, 396, 494, 647
Hpy188III TCNNGA 3 cut(s) 197, 256, 469
Hpy8I GTNNAC 1 cut(s) 699
Hpy99I CGWCG 1 cut(s) 419
HpyAV CCTTC 1 cut(s) 309
HpyCH4III ACNGT 4 cut(s) 203, 377, 434, 614
HpyCH4IV ACGT 2 cut(s) 417, 560
HpyCH4V TGCA 4 cut(s) 124, 336, 446, 456
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 533
HpyF3I CTNAG 3 cut(s) 11, 135, 257
HpySE526I ACGT 2 cut(s) 417, 560
Hsp92I GRCGYC 1 cut(s) 417
Hsp92II CATG 5 cut(s) 95, 243, 336, 544, 713
Ksp22I TGATCA 1 cut(s) 657
Kzo9I GATC 3 cut(s) 36, 266, 657
LmnI GCTCC 1 cut(s) 742
Lsp1109I GCAGC 1 cut(s) 496
LweI GCATC 1 cut(s) 558
MaeI CTAG 1 cut(s) 147
MaeII ACGT 2 cut(s) 417, 560
MaeIII GTNAC 2 cut(s) 14, 292
MalI GATC 3 cut(s) 38, 268, 659
MboI GATC 3 cut(s) 36, 266, 657
MboII GAAGA 6 cut(s) 67, 380, 383, 507, 540, 728
MflI RGATCY 1 cut(s) 266
MhlI GDGCHC 1 cut(s) 529
MlsI TGGCCA 1 cut(s) 504
MluCI AATT 3 cut(s) 303, 409, 688
MluNI TGGCCA 1 cut(s) 504
MlyI GAGTC 2 cut(s) 347, 498
MmeI TCCRAC 1 cut(s) 472
MnlI CCTC 8 cut(s) 21, 101, 254, 430, 564, 667, 706, 712
Mox20I TGGCCA 1 cut(s) 504
MscI TGGCCA 1 cut(s) 504
Msp20I TGGCCA 1 cut(s) 504
MspA1I CMGCKG 1 cut(s) 751
MspI CCGG 1 cut(s) 603
MspR9I CCNGG 3 cut(s) 45, 573, 604
MvaI CCWGG 2 cut(s) 45, 573
MwoI GCNNNNNNNGC 2 cut(s) 249, 533
NciI CCSGG 1 cut(s) 604
NcoI CCATGG 1 cut(s) 91
NdeII GATC 3 cut(s) 36, 266, 657
NlaIII CATG 5 cut(s) 95, 243, 336, 544, 713
NlaIV GGNNCC 2 cut(s) 268, 526
NspI RCATGY 1 cut(s) 336
PfeI GAWTC 3 cut(s) 173, 207, 362
PkrI GCNGC 2 cut(s) 511, 538
PleI GAGTC 2 cut(s) 347, 497
PpsI GAGTC 2 cut(s) 347, 497
Psp1406I AACGTT 1 cut(s) 560
Psp6I CCWGG 2 cut(s) 43, 571
PspEI GGTNACC 1 cut(s) 292
PspGI CCWGG 2 cut(s) 43, 571
PspN4I GGNNCC 2 cut(s) 268, 526
PspPI GGNCC 1 cut(s) 575
PsuI RGATCY 1 cut(s) 266
PvuII CAGCTG 1 cut(s) 751
RsaI GTAC 2 cut(s) 321, 611
RsaNI GTAC 2 cut(s) 320, 610
SatI GCNGC 2 cut(s) 510, 537
Sau3AI GATC 3 cut(s) 36, 266, 657
Sau96I GGNCC 1 cut(s) 575
SchI GAGTC 2 cut(s) 347, 498
ScrFI CCNGG 3 cut(s) 45, 573, 604
SduI GDGCHC 1 cut(s) 529
SfaNI GCATC 1 cut(s) 558
Sse9I AATT 3 cut(s) 303, 409, 688
SsiI CCGC 2 cut(s) 536, 594
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 3 cut(s) 43, 571, 602
StyI CCWWGG 2 cut(s) 91, 723
TaaI ACNGT 4 cut(s) 203, 377, 434, 614
TaiI ACGT 2 cut(s) 420, 563
TaqI TCGA 1 cut(s) 246
TasI AATT 3 cut(s) 303, 409, 688
TatI WGTACW 1 cut(s) 609
TauI GCSGC 1 cut(s) 539
TfiI GAWTC 3 cut(s) 173, 207, 362
TscAI CASTG 3 cut(s) 163, 346, 537
TseI GCWGC 1 cut(s) 509
TspDTI ATGAA 1 cut(s) 228
TspGWI ACGGA 1 cut(s) 505
TspRI CASTG 3 cut(s) 163, 346, 537
XapI RAATTY 1 cut(s) 688
XceI RCATGY 1 cut(s) 336
XspI CTAG 1 cut(s) 147
ZraI GACGTC 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.