Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007810

Physical Location & Seq

Genomic Coordinates Reverse (-)

23159141 .. 23161752

Gene Structure 2612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G192600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGGTCTGCTCACGAACAGGGTTGAGAGAAACGAGATCAAGCTTGGAGACCACATCTACACCTACAGAGCTGTCTTCACCTACTCTCATCATGAAAGGATTCTAAGCAGTAAAATTGTGCAGCATAAGACACTCTCCGGAGGTATATATCTTGGGGGAAGCAAGGTTGTCCATTTTAGGCCTGAGAGAAATTTGAACTTAAGCACTGAAGCATCATCTGACGTTTATGATTCAATGACCTGTCCCACCTTTCCTGACTGTGGATTCAGGCAACCCAACAGTGGCGTTGTCCTGTCATGCCTCGATTGCTTTCTCAAAAATGGATCCCTTTACTGCTTTGAATATGGTGTTAGCCCTTCAGTTTTCCTCGCAAAAGTACGGGGTGGCACATGCACCACTGCAGCATCTGACTCCCCAGAAACGGTTGTCCACCGTGCAATGTATCTTCTTCAAAATGGATTTGGCAACTATGACGTGTTTCAGAACAACTGTGAAGACTTTACTATGTATTGCAAAACTGGTCTCTTGATAGTAGACAAGCAGGGCGTTGGTAGAAGTGGTCAAGCTTCTTCAATCATCGGTGCCCCATTGGCAGCCATTCTTTCTTCTCCTCTGAAGTTGTTGATGCCAAGCCCAGTTGGAGTGGCTACCATGACAGCTGGTATGTACTGTATGAGCAGGTATGCAACTGACATTGGTGTTCGAACCGATGTGATCAAGGTGGCGGTGGAGGATTTGGCTGTGAACTTGGGTTGGGCAGACGACAATGAGGAGGAGGTGACTGAGGTTGAGGAGTCTTCTATGACACAGATTACCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRAT

Protein Analysis

274

Amino Acids

29.86

Weight (kDa)

5.53

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01225
fragaria_vesca	FvH4_7g17011 FvH4_7g17011 FvH4_7g17011 FvH4_7g17011
malus_domestica	MD07G1153700.v1.1
prunus_persica	Prupe.2G192600_v2.0.a1 Prupe.2G192600_v2.0.a1 Prupe.2G192600_v2.0.a1 Prupe.2G192600_v2.0.a1 Prupe.2G192600_v2.0.a1
pyrus_communis	pycom07g15150
rosa_chinensis	RchiOBHm_Chr1g0360421
rosa_laevigata	RLG00000027809
rosa_multiflora	Rmu_ssc0000368.1_g000083
rosa_roxburghii	Rroxscaffold_4G00296120
rosa_rugosa	Rorug01G0276700 Rorug01G0276800 Rorug01G0276900
rosa_samantha	Rh1AG290800 Rh1BG255900 Rh1CG273600 Rh1DG285700
rosa_wichuraiana	Rw1G025750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	669
AccB1I	GGYRCC	1 cut(s)	581
AccI	GTMKAC	1 cut(s)	534
AccIII	TCCGGA	1 cut(s)	137
AciI	CCGC	1 cut(s)	725
AclWI	GGATC	2 cut(s)	318, 331
AcsI	RAATTY	1 cut(s)	190
AcuI	CTGAAG	3 cut(s)	228, 342, 635
AfaI	GTAC	2 cut(s)	378, 668
AfiI	CCNNNNNNNGG	3 cut(s)	260, 281, 421
AflII	CTTAAG	1 cut(s)	199
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	5 cut(s)	196, 234, 341, 452, 573
AjiI	CACGTC	1 cut(s)	475
AluBI	AGCT	4 cut(s)	43, 71, 566, 659
AluI	AGCT	4 cut(s)	43, 71, 566, 659
Alw26I	GTCTC	2 cut(s)	42, 527
AlwI	GGATC	2 cut(s)	318, 331
AlwNI	CAGNNNCTG	1 cut(s)	407
Aor13HI	TCCGGA	1 cut(s)	137
AoxI	GGCC	1 cut(s)	179
ApeKI	GCWGC	3 cut(s)	121, 401, 593
ApoI	RAATTY	1 cut(s)	190
Asp700I	GAANNNNTTC	1 cut(s)	99
AsuHPI	GGTGA	2 cut(s)	70, 790
AsuII	TTCGAA	1 cut(s)	703
BaeGI	GKGCMC	1 cut(s)	586
BamHI	GGATCC	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	581
BbsI	GAAGAC	3 cut(s)	67, 501, 789
BbvI	GCAGC	3 cut(s)	133, 413, 605
BclI	TGATCA	1 cut(s)	714
BcoDI	GTCTC	2 cut(s)	42, 527
BfmI	CTRYAG	2 cut(s)	64, 399
BfrI	CTTAAG	1 cut(s)	199
BfuAI	ACCTGC	1 cut(s)	669
BglI	GCCNNNNNGGC	1 cut(s)	590
BisI	GCNGC	3 cut(s)	122, 402, 594
BlsI	GCNGC	3 cut(s)	123, 403, 595
BmgBI	CACGTC	1 cut(s)	475
BmiI	GGNNCC	2 cut(s)	325, 583
BmrI	ACTGGG	1 cut(s)	629
BmsI	GCATC	3 cut(s)	221, 413, 615
BmuI	ACTGGG	1 cut(s)	629
BpiI	GAAGAC	3 cut(s)	67, 501, 789
Bpu14I	TTCGAA	1 cut(s)	703
BsaI	GGTCTC	2 cut(s)	42, 527
BsaWI	WCCGGW	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	3 cut(s)	260, 281, 421
Bse1I	ACTGG	2 cut(s)	523, 635
Bse3DI	GCAATG	1 cut(s)	444
BseAI	TCCGGA	1 cut(s)	137
BseLI	CCNNNNNNNGG	3 cut(s)	260, 281, 421
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	2 cut(s)	174, 774
BseNI	ACTGG	2 cut(s)	523, 635
BseRI	GAGGAG	4 cut(s)	600, 785, 788, 806
BseSI	GKGCMC	1 cut(s)	586
BseXI	GCAGC	3 cut(s)	133, 413, 605
BsgI	GTGCAG	1 cut(s)	140
BshFI	GGCC	1 cut(s)	181
BshNI	GGYRCC	1 cut(s)	581
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	3 cut(s)	260, 281, 421
BsmAI	GTCTC	2 cut(s)	42, 527
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	181
Bso31I	GGTCTC	2 cut(s)	42, 527
Bsp119I	TTCGAA	1 cut(s)	703
Bsp1286I	GDGCHC	1 cut(s)	586
Bsp13I	TCCGGA	1 cut(s)	137
Bsp143I	GATC	3 cut(s)	36, 323, 714
BspACI	CCGC	1 cut(s)	725
BspANI	GGCC	1 cut(s)	181
BspCNI	CTCAG	2 cut(s)	175, 775
BspEI	TCCGGA	1 cut(s)	137
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	325, 583
BspMAI	CTGCAG	1 cut(s)	403
BspMI	ACCTGC	1 cut(s)	669
BspPI	GGATC	2 cut(s)	318, 331
BspT104I	TTCGAA	1 cut(s)	703
BspT107I	GGYRCC	1 cut(s)	581
BspTI	CTTAAG	1 cut(s)	199
BspTNI	GGTCTC	2 cut(s)	42, 527
BsrDI	GCAATG	1 cut(s)	444
BsrI	ACTGG	2 cut(s)	523, 635
BssMI	GATC	3 cut(s)	36, 323, 714
Bst4CI	ACNGT	6 cut(s)	260, 281, 424, 434, 491, 671
BstAFI	CTTAAG	1 cut(s)	199
BstBI	TTCGAA	1 cut(s)	703
BstDEI	CTNAG	3 cut(s)	104, 183, 783
BstKTI	GATC	3 cut(s)	39, 326, 717
BstMAI	GTCTC	2 cut(s)	42, 527
BstMBI	GATC	3 cut(s)	36, 323, 714
BstMWI	GCNNNNNNNGC	2 cut(s)	306, 590
BstNSI	RCATGY	1 cut(s)	393
BstSFI	CTRYAG	2 cut(s)	64, 399
BstSLI	GKGCMC	1 cut(s)	586
BstV1I	GCAGC	3 cut(s)	133, 413, 605
BstV2I	GAAGAC	3 cut(s)	67, 501, 789
BstX2I	RGATCY	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	181
BtrI	CACGTC	1 cut(s)	475
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	3 cut(s)	204, 286, 396
BveI	ACCTGC	1 cut(s)	669
CaiI	CAGNNNCTG	1 cut(s)	407
CciI	TCATGA	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	377, 667
CviAII	CATG	4 cut(s)	92, 297, 390, 652
CviQI	GTAC	2 cut(s)	377, 667
DdeI	CTNAG	3 cut(s)	104, 183, 783
DpnI	GATC	3 cut(s)	38, 325, 716
DpnII	GATC	3 cut(s)	36, 323, 714
Eco147I	AGGCCT	1 cut(s)	181
Eco31I	GGTCTC	2 cut(s)	42, 527
Eco57I	CTGAAG	3 cut(s)	228, 342, 635
FaeI	CATG	4 cut(s)	95, 300, 393, 655
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	4 cut(s)	91, 296, 389, 651
FbaI	TGATCA	1 cut(s)	714
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	3 cut(s)	122, 402, 594
Fsp4HI	GCNGC	3 cut(s)	122, 402, 594
GluI	GCNGC	3 cut(s)	122, 402, 594
HaeIII	GGCC	1 cut(s)	181
HapII	CCGG	1 cut(s)	138
Hin1II	CATG	4 cut(s)	95, 300, 393, 655
HindIII	AAGCTT	2 cut(s)	41, 564
HinfI	GANTC	5 cut(s)	100, 230, 264, 410, 794
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	2 cut(s)	70, 790
Hpy166II	GTNNAC	3 cut(s)	430, 535, 745
Hpy188I	TCNGA	4 cut(s)	220, 409, 483, 615
Hpy188III	TCNNGA	5 cut(s)	13, 92, 138, 254, 526
Hpy8I	GTNNAC	3 cut(s)	430, 535, 745
HpyAV	CCTTC	1 cut(s)	366
HpyCH4III	ACNGT	6 cut(s)	260, 281, 424, 434, 491, 671
HpyCH4IV	ACGT	2 cut(s)	222, 474
HpyCH4V	TGCA	6 cut(s)	121, 393, 401, 437, 513, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	306, 590
HpyF3I	CTNAG	3 cut(s)	104, 183, 783
HpySE526I	ACGT	2 cut(s)	222, 474
Hsp92II	CATG	4 cut(s)	95, 300, 393, 655
Kpn2I	TCCGGA	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	714
Kzo9I	GATC	3 cut(s)	36, 323, 714
Lsp1109I	GCAGC	3 cut(s)	133, 413, 605
LweI	GCATC	3 cut(s)	221, 413, 615
MaeII	ACGT	2 cut(s)	222, 474
MaeIII	GTNAC	1 cut(s)	778
MalI	GATC	3 cut(s)	38, 325, 716
MboI	GATC	3 cut(s)	36, 323, 714
MboII	GAAGA	7 cut(s)	67, 437, 440, 506, 561, 597, 789
MflI	RGATCY	1 cut(s)	323
MhlI	GDGCHC	1 cut(s)	586
MluCI	AATT	2 cut(s)	114, 190
MlyI	GAGTC	2 cut(s)	404, 803
MmeI	TCCRAC	1 cut(s)	619
MroI	TCCGGA	1 cut(s)	137
MroXI	GAANNNNTTC	1 cut(s)	99
MseI	TTAA	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	659
MspCI	CTTAAG	1 cut(s)	199
MspI	CCGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	306, 590
NdeII	GATC	3 cut(s)	36, 323, 714
NlaIII	CATG	4 cut(s)	95, 300, 393, 655
NlaIV	GGNNCC	2 cut(s)	325, 583
NmuCI	GTSAC	1 cut(s)	778
NspI	RCATGY	1 cut(s)	393
NspV	TTCGAA	1 cut(s)	703
PagI	TCATGA	1 cut(s)	91
PceI	AGGCCT	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	3 cut(s)	100, 230, 264
PkrI	GCNGC	3 cut(s)	123, 403, 595
PleI	GAGTC	2 cut(s)	404, 802
PpsI	GAGTC	2 cut(s)	404, 802
PspN4I	GGNNCC	2 cut(s)	325, 583
PstI	CTGCAG	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	407
PsuI	RGATCY	1 cut(s)	323
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	2 cut(s)	378, 668
RsaNI	GTAC	2 cut(s)	377, 667
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	3 cut(s)	122, 402, 594
Sau3AI	GATC	3 cut(s)	36, 323, 714
SchI	GAGTC	2 cut(s)	404, 803
SduI	GDGCHC	1 cut(s)	586
SfaNI	GCATC	3 cut(s)	221, 413, 615
SfcI	CTRYAG	2 cut(s)	64, 399
SfuI	TTCGAA	1 cut(s)	703
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	2 cut(s)	114, 190
SseBI	AGGCCT	1 cut(s)	181
SsiI	CCGC	1 cut(s)	725
StuI	AGGCCT	1 cut(s)	181
TaaI	ACNGT	6 cut(s)	260, 281, 424, 434, 491, 671
TaiI	ACGT	2 cut(s)	225, 477
TaqI	TCGA	2 cut(s)	303, 703
TasI	AATT	2 cut(s)	114, 190
TatI	WGTACW	1 cut(s)	666
TfiI	GAWTC	3 cut(s)	100, 230, 264
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	3 cut(s)	211, 286, 403
TseFI	GTSAC	1 cut(s)	778
TseI	GCWGC	3 cut(s)	121, 401, 593
Tsp45I	GTSAC	1 cut(s)	778
TspDTI	ATGAA	1 cut(s)	108
TspRI	CASTG	3 cut(s)	211, 286, 403
Vha464I	CTTAAG	1 cut(s)	199
XapI	RAATTY	1 cut(s)	190
XceI	RCATGY	1 cut(s)	393
XmiI	GTMKAC	1 cut(s)	534
XmnI	GAANNNNTTC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.