Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007810

Physical Location & Seq

Genomic Coordinates Reverse (-)

38914315 .. 38917284

Gene Structure 2970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0276900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCCTTTCTACAGTGGTGCTGTTGGTAATCTGTGCCTGGCACGTGGCAGTTCAAAGGGAGTAAATAAGGTTGGTGCAGATGTTAATGCACATGGAGGGAGGGTTAGGCATGAAGGAGGGCCAGCTGATGTTATAAATTTGGAGGGAGATAGTGATGTGGATGTGGGGAAGGGTGTGCAGAGGCAAAGTCAAGGCACTTTTGGAGGGCTTAGTGACTTGCTCCTTGACTTGTTTGCTTCACAATGCGAGGTGAGGAAGGGAGGTAATGACAAAACTGGGCAGGAGCAGAATGAAAGCCACCAGCAACAGGAGGATGACTTAGGGGTATTTAGTGGATTCTACAATGCATTTGTCAAAAGGCCTAGACCAAAGCATATCGCTAAGAGGCCTAAGCAGTATGGTCCAGCTGTTGAAGAGGCAATCAGGGCATCTGAGGAGGCTTTGAAGAGATCTGAAGAAGAGCCTTTGAAGGCATCTGTTGAAGAGCCAGAACAGGTTGGTGCAGGCCAAACAAGACCTGAGGTTGGGCAAGTTGTTGAAGAGGCTGCAGCCCAAACTATACCAGAAGTTGGGCCAACTGAGGAAGAGGTTGCGGCCCAAACAAGACCAGATGTTGGGCCAACTGTTGAAGAGGCTGCAGGCCAAACAGTTGGTCAAGACAAGGGGAAGAAAGATAAGGGGAACAAGGCTGCTAGTGAAACAGCAGCTAGCCAAGAAGAGGAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRAT

Protein Analysis

242

Amino Acids

25.63

Weight (kDa)

4.84

Isoelectric Point (pI)

57.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01225
fragaria_vesca	FvH4_7g17011 FvH4_7g17011 FvH4_7g17011 FvH4_7g17011
malus_domestica	MD07G1153700.v1.1
prunus_persica	Prupe.2G192600_v2.0.a1 Prupe.2G192600_v2.0.a1 Prupe.2G192600_v2.0.a1 Prupe.2G192600_v2.0.a1 Prupe.2G192600_v2.0.a1
pyrus_communis	pycom07g15150
rosa_chinensis	RchiOBHm_Chr1g0360421
rosa_laevigata	RLG00000027809
rosa_multiflora	Rmu_ssc0000368.1_g000083
rosa_roxburghii	Rroxscaffold_4G00296120
rosa_rugosa	Rorug01G0276700 Rorug01G0276800 Rorug01G0276900
rosa_samantha	Rh1AG290800 Rh1BG255900 Rh1CG273600 Rh1DG285700
rosa_wichuraiana	Rw1G025750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	134
AccB7I	CCANNNNNTGG	2 cut(s)	569, 614
AciI	CCGC	1 cut(s)	593
AcsI	RAATTY	1 cut(s)	136
AcuI	CTGAAG	1 cut(s)	474
AcvI	CACGTG	1 cut(s)	44
AfiI	CCNNNNNNNGG	5 cut(s)	307, 524, 569, 614, 718
AgsI	TTSAA	7 cut(s)	54, 413, 445, 469, 482, 539, 629
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	3 cut(s)	125, 407, 707
AluI	AGCT	3 cut(s)	125, 407, 707
AoxI	GGCC	8 cut(s)	119, 359, 386, 505, 572, 594, 617, 640
ApeKI	GCWGC	5 cut(s)	545, 548, 635, 689, 704
ApoI	RAATTY	1 cut(s)	136
ArsI	GACNNNNNNTTYG	2 cut(s)	637, 669
AspS9I	GGNCC	5 cut(s)	119, 401, 572, 595, 617
AsuHPI	GGTGA	1 cut(s)	262
AsuNHI	GCTAGC	1 cut(s)	707
AvaII	GGWCC	1 cut(s)	401
AxyI	CCTNAGG	1 cut(s)	519
BbrPI	CACGTG	1 cut(s)	44
BbvI	GCAGC	5 cut(s)	532, 560, 622, 676, 716
BciT130I	CCWGG	1 cut(s)	38
BfaI	CTAG	3 cut(s)	363, 693, 708
BfmI	CTRYAG	3 cut(s)	10, 546, 636
BglII	AGATCT	2 cut(s)	449, 723
BisI	GCNGC	6 cut(s)	546, 549, 594, 636, 690, 705
BlsI	GCNGC	6 cut(s)	547, 550, 595, 637, 691, 706
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	5 cut(s)	119, 401, 572, 595, 617
BmrFI	CCNGG	1 cut(s)	38
BmrI	ACTGGG	1 cut(s)	285
BmsI	GCATC	2 cut(s)	437, 482
BmtI	GCTAGC	1 cut(s)	711
BmuI	ACTGGG	1 cut(s)	285
Bpu10I	CCTNAGC	1 cut(s)	390
BsaAI	YACGTR	1 cut(s)	44
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	5 cut(s)	307, 524, 569, 614, 718
Bse1I	ACTGG	1 cut(s)	280
Bse21I	CCTNAGG	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	38
BseGI	GGATG	2 cut(s)	166, 319
BseLI	CCNNNNNNNGG	5 cut(s)	307, 524, 569, 614, 718
BseMII	CTCAG	3 cut(s)	423, 510, 570
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	5 cut(s)	532, 560, 622, 676, 716
BsgI	GTGCAG	3 cut(s)	96, 197, 522
BshFI	GGCC	8 cut(s)	121, 361, 388, 507, 574, 596, 619, 642
BslI	CCNNNNNNNGG	5 cut(s)	307, 524, 569, 614, 718
BsnI	GGCC	8 cut(s)	121, 361, 388, 507, 574, 596, 619, 642
Bsp143I	GATC	2 cut(s)	449, 723
BspACI	CCGC	1 cut(s)	593
BspANI	GGCC	8 cut(s)	121, 361, 388, 507, 574, 596, 619, 642
BspCNI	CTCAG	3 cut(s)	424, 511, 571
BspMAI	CTGCAG	2 cut(s)	550, 640
BspOI	GCTAGC	1 cut(s)	711
BspQI	GCTCTTC	2 cut(s)	453, 477
BsrI	ACTGG	1 cut(s)	280
BssMI	GATC	2 cut(s)	449, 723
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	3 cut(s)	14, 625, 649
Bst6I	CTCTTC	8 cut(s)	408, 440, 453, 477, 534, 579, 624, 711
BstBAI	YACGTR	1 cut(s)	44
BstC8I	GCNNGC	4 cut(s)	123, 505, 640, 709
BstDEI	CTNAG	7 cut(s)	209, 319, 381, 390, 432, 519, 579
BstF5I	GGATG	2 cut(s)	166, 319
BstKTI	GATC	2 cut(s)	452, 726
BstMBI	GATC	2 cut(s)	449, 723
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstSFI	CTRYAG	3 cut(s)	10, 546, 636
BstV1I	GCAGC	5 cut(s)	532, 560, 622, 676, 716
BstX2I	RGATCY	2 cut(s)	449, 723
BstXI	CCANNNNNNTGG	1 cut(s)	650
BstYI	RGATCY	2 cut(s)	449, 723
Bsu36I	CCTNAGG	1 cut(s)	519
BsuRI	GGCC	8 cut(s)	121, 361, 388, 507, 574, 596, 619, 642
BtsCI	GGATG	2 cut(s)	166, 319
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	4 cut(s)	123, 505, 640, 709
Cfr13I	GGNCC	5 cut(s)	119, 401, 572, 595, 617
CviAII	CATG	2 cut(s)	92, 110
DdeI	CTNAG	7 cut(s)	209, 319, 381, 390, 432, 519, 579
DpnI	GATC	2 cut(s)	451, 725
DpnII	GATC	2 cut(s)	449, 723
Eam1104I	CTCTTC	8 cut(s)	408, 440, 453, 477, 534, 579, 624, 711
EarI	CTCTTC	8 cut(s)	408, 440, 453, 477, 534, 579, 624, 711
Eco147I	AGGCCT	2 cut(s)	361, 388
Eco47I	GGWCC	1 cut(s)	401
Eco57I	CTGAAG	1 cut(s)	474
Eco72I	CACGTG	1 cut(s)	44
Eco81I	CCTNAGG	1 cut(s)	519
EcoRII	CCWGG	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	349
FaeI	CATG	2 cut(s)	95, 113
FaiI	YATR	6 cut(s)	93, 111, 134, 375, 399, 560
FatI	CATG	2 cut(s)	91, 109
Fnu4HI	GCNGC	6 cut(s)	546, 549, 594, 636, 690, 705
FokI	GGATG	2 cut(s)	173, 326
Fsp4HI	GCNGC	6 cut(s)	546, 549, 594, 636, 690, 705
FspBI	CTAG	3 cut(s)	363, 693, 708
GluI	GCNGC	6 cut(s)	546, 549, 594, 636, 690, 705
HaeIII	GGCC	8 cut(s)	121, 361, 388, 507, 574, 596, 619, 642
Hin1II	CATG	2 cut(s)	95, 113
HinfI	GANTC	1 cut(s)	336
HphI	GGTGA	1 cut(s)	262
Hpy188I	TCNGA	3 cut(s)	433, 454, 728
Hpy188III	TCNNGA	1 cut(s)	656
HpyAV	CCTTC	4 cut(s)	107, 163, 250, 463
HpyCH4III	ACNGT	3 cut(s)	14, 625, 649
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	7 cut(s)	77, 89, 178, 347, 503, 548, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	7 cut(s)	209, 319, 381, 390, 432, 519, 579
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	2 cut(s)	95, 113
Kzo9I	GATC	2 cut(s)	449, 723
LguI	GCTCTTC	2 cut(s)	453, 477
LmnI	GCTCC	2 cut(s)	225, 283
Lsp1109I	GCAGC	5 cut(s)	532, 560, 622, 676, 716
LweI	GCATC	2 cut(s)	437, 482
MaeI	CTAG	3 cut(s)	363, 693, 708
MaeII	ACGT	1 cut(s)	43
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	2 cut(s)	451, 725
MboI	GATC	2 cut(s)	449, 723
MflI	RGATCY	2 cut(s)	449, 723
MluCI	AATT	1 cut(s)	136
Mph1103I	ATGCAT	1 cut(s)	349
MseI	TTAA	1 cut(s)	84
MspA1I	CMGCKG	2 cut(s)	125, 407
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	425
NdeII	GATC	2 cut(s)	449, 723
NheI	GCTAGC	1 cut(s)	707
NlaIII	CATG	2 cut(s)	95, 113
NmuCI	GTSAC	1 cut(s)	212
NsiI	ATGCAT	1 cut(s)	349
PceI	AGGCCT	2 cut(s)	361, 388
PciSI	GCTCTTC	2 cut(s)	453, 477
PfeI	GAWTC	1 cut(s)	336
PflMI	CCANNNNNTGG	2 cut(s)	569, 614
PkrI	GCNGC	6 cut(s)	547, 550, 595, 637, 691, 706
PmaCI	CACGTG	1 cut(s)	44
PmlI	CACGTG	1 cut(s)	44
Ppu21I	YACGTR	1 cut(s)	44
PsiI	TTATAA	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	36
PspCI	CACGTG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	36
PspPI	GGNCC	5 cut(s)	119, 401, 572, 595, 617
PstI	CTGCAG	2 cut(s)	550, 640
PsuI	RGATCY	2 cut(s)	449, 723
PvuII	CAGCTG	2 cut(s)	125, 407
SapI	GCTCTTC	2 cut(s)	453, 477
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	6 cut(s)	546, 549, 594, 636, 690, 705
Sau3AI	GATC	2 cut(s)	449, 723
Sau96I	GGNCC	5 cut(s)	119, 401, 572, 595, 617
ScrFI	CCNGG	1 cut(s)	38
SfaNI	GCATC	2 cut(s)	437, 482
SfcI	CTRYAG	3 cut(s)	10, 546, 636
SinI	GGWCC	1 cut(s)	401
Sse9I	AATT	1 cut(s)	136
SseBI	AGGCCT	2 cut(s)	361, 388
SsiI	CCGC	1 cut(s)	593
SspMI	CTAG	3 cut(s)	363, 693, 708
StuI	AGGCCT	2 cut(s)	361, 388
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	3 cut(s)	14, 625, 649
TaiI	ACGT	1 cut(s)	46
TasI	AATT	1 cut(s)	136
TauI	GCSGC	1 cut(s)	596
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	5 cut(s)	545, 548, 635, 689, 704
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	126, 306
TspRI	CASTG	1 cut(s)	19
Van91I	CCANNNNNTGG	2 cut(s)	569, 614
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	1 cut(s)	136
XspI	CTAG	3 cut(s)	363, 693, 708
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.