Rorug01G0276800

Lecithin retinol acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0007810
Physical Location & Seq
Reverse (-)
38907680 .. 38911109
3430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0276800.1

Sequence Viewer

Length: 414 bp
ATGGCACATGCTGAATTTGACGGAGACATTACGAAAAATGACCGCAGAAACCAGATAGCTCTAGAACTGATCCACAGTCTCAGAGGAAAAAAATACGCTGACTCTGCAACACTGATCGTGAATCTTCAACAGCCCGTCAACTTTCTCTCCGTCGACAACGTGAAGGTTTCAATTCCCATACAGATCATTTGTACTTATCATTTGCCATACCTCTACAGATGCTACATAGGTAGATATATGGTGCCTGTCGGAGTGCTGAAGAGACATTCTACACCTCAGGATGTTTGCCGAGATTTTGCACCATTGGCAAAGAATGATGGAAGCAGTAGCTTTCAAATTAAGACATTTGCAAATGCCATAGCAGCACCTGTGTACCTAATTGGAGCAGAATTGCTCATGTATGTAGCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

137

Amino Acids

15.3

Weight (kDa)

8.79

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 241
AccI GTMKAC 1 cut(s) 153
AciI CCGC 1 cut(s) 43
AclWI GGATC 1 cut(s) 64
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 278
AfaI GTAC 2 cut(s) 193, 374
AgsI TTSAA 3 cut(s) 128, 171, 335
AluBI AGCT 3 cut(s) 59, 330, 407
AluI AGCT 3 cut(s) 59, 330, 407
Alw26I GTCTC 3 cut(s) 18, 83, 256
AlwI GGATC 1 cut(s) 64
AlwNI CAGNNNCTG 1 cut(s) 368
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 1 cut(s) 14
AxyI CCTNAGG 1 cut(s) 276
BaeI ACNNNNGTAYC 2 cut(s) 356, 389
BanI GGYRCC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 374
BccI CCATC 1 cut(s) 311
BcoDI GTCTC 3 cut(s) 18, 83, 256
BfaI CTAG 1 cut(s) 62
BfmI CTRYAG 1 cut(s) 214
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
BmiI GGNNCC 1 cut(s) 243
BmsI GCATC 1 cut(s) 209
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bse21I CCTNAGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 286
BseMII CTCAG 2 cut(s) 94, 290
BseXI GCAGC 1 cut(s) 374
BshNI GGYRCC 1 cut(s) 241
BsmAI GTCTC 3 cut(s) 18, 83, 256
Bsp143I GATC 3 cut(s) 69, 114, 183
BspACI CCGC 1 cut(s) 43
BspCNI CTCAG 2 cut(s) 93, 289
BspLI GGNNCC 1 cut(s) 243
BspPI GGATC 1 cut(s) 64
BspT107I GGYRCC 1 cut(s) 241
BssMI GATC 3 cut(s) 69, 114, 183
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 254
BstDEI CTNAG 2 cut(s) 80, 276
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 3 cut(s) 72, 117, 186
BstMAI GTCTC 3 cut(s) 18, 83, 256
BstMBI GATC 3 cut(s) 69, 114, 183
BstMWI GCNNNNNNNGC 3 cut(s) 104, 305, 362
BstNSI RCATGY 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 374
Bsu36I CCTNAGG 1 cut(s) 276
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 110
CaiI CAGNNNCTG 1 cut(s) 368
Csp6I GTAC 2 cut(s) 192, 373
CviAII CATG 2 cut(s) 8, 397
CviJI RGCY 4 cut(s) 59, 133, 330, 407
CviKI_1 RGCY 4 cut(s) 59, 133, 330, 407
CviQI GTAC 2 cut(s) 192, 373
DdeI CTNAG 2 cut(s) 80, 276
DpnI GATC 3 cut(s) 71, 116, 185
DpnII GATC 3 cut(s) 69, 114, 183
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 278
Eco81I CCTNAGG 1 cut(s) 276
FaeI CATG 2 cut(s) 11, 400
FaiI YATR 9 cut(s) 9, 179, 208, 227, 237, 239, 359, 398, 402
FatI CATG 2 cut(s) 7, 396
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 1 cut(s) 62
GluI GCNGC 1 cut(s) 363
Hin1II CATG 2 cut(s) 11, 400
HincII GTYRAC 2 cut(s) 139, 154
HindII GTYRAC 2 cut(s) 139, 154
HinfI GANTC 2 cut(s) 101, 121
Hpy166II GTNNAC 3 cut(s) 139, 154, 373
Hpy188I TCNGA 2 cut(s) 83, 251
Hpy188III TCNNGA 3 cut(s) 62, 118, 278
Hpy8I GTNNAC 3 cut(s) 139, 154, 373
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 3 cut(s) 107, 299, 350
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 305, 362
HpyF3I CTNAG 2 cut(s) 80, 276
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 2 cut(s) 11, 400
Kzo9I GATC 3 cut(s) 69, 114, 183
LmnI GCTCC 1 cut(s) 383
LpnPI CCDG 5 cut(s) 65, 258, 263, 381, 393
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 1 cut(s) 209
MaeI CTAG 1 cut(s) 62
MaeII ACGT 1 cut(s) 159
MalI GATC 3 cut(s) 71, 116, 185
MboI GATC 3 cut(s) 69, 114, 183
MboII GAAGA 2 cut(s) 116, 271
MluCI AATT 5 cut(s) 14, 171, 336, 378, 389
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 3 cut(s) 77, 221, 285
MseI TTAA 2 cut(s) 339, 412
MwoI GCNNNNNNNGC 3 cut(s) 104, 305, 362
NdeII GATC 3 cut(s) 69, 114, 183
NlaIII CATG 2 cut(s) 11, 400
NlaIV GGNNCC 1 cut(s) 243
NmeAIII GCCGAG 1 cut(s) 314
NspI RCATGY 1 cut(s) 11
PfeI GAWTC 1 cut(s) 121
PkrI GCNGC 1 cut(s) 364
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 243
PstNI CAGNNNCTG 1 cut(s) 368
RsaI GTAC 2 cut(s) 193, 374
RsaNI GTAC 2 cut(s) 192, 373
SalI GTCGAC 1 cut(s) 152
SaqAI TTAA 2 cut(s) 339, 412
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 3 cut(s) 69, 114, 183
SchI GAGTC 1 cut(s) 95
SfaNI GCATC 1 cut(s) 209
SfcI CTRYAG 1 cut(s) 214
Sse9I AATT 5 cut(s) 14, 171, 336, 378, 389
SsiI CCGC 1 cut(s) 43
SspMI CTAG 1 cut(s) 62
TaaI ACNGT 1 cut(s) 77
TaiI ACGT 1 cut(s) 162
TaqI TCGA 1 cut(s) 153
TasI AATT 5 cut(s) 14, 171, 336, 378, 389
TatI WGTACW 1 cut(s) 191
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 2 cut(s) 339, 412
Tru9I TTAA 2 cut(s) 339, 412
TscAI CASTG 1 cut(s) 117
TseI GCWGC 1 cut(s) 362
TspGWI ACGGA 2 cut(s) 36, 139
TspRI CASTG 1 cut(s) 117
XapI RAATTY 1 cut(s) 14
XbaI TCTAGA 1 cut(s) 61
XceI RCATGY 1 cut(s) 11
XmiI GTMKAC 1 cut(s) 153
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.