AT1G01570

glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011701
Physical Location & Seq
Forward (+)
204935 .. 207642
2708 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01570.2

Sequence Viewer

Length: 1437 bp
ATGTCGAGGCTAATCTTCTTAATTCTCGCCATTCTCTTCTCTCTTCAATTCGTTTTCTACCCTTTAAATTTCATCTCCTCTTCTTCTCAACCTCTGATCAAATTCTCTGTTTCACCCGTCGTATCCGGATCCGGGTCGGTTCATGAACCGGACCAAACCGAACTCAAGCACGTCGTTTTCGGAATCGCCGCCTCTGCGAAATTCTGGAAACACCGTAAAGACTACGTGAAGCTCTGGTGGAAACCAAACGGTGAAATGAACGGCGTCGTTTGGTTAGACCAACACATTAACCAAAACGACAACGTTTCGAAAACATTACCTCCGATCAGAATCTCCTCCGACACGTCTAGGTTTCAGTACAGATACCCAAAGGGTCTCCGATCGGCGATCAGAATCACGAGAATCGTCTCGGAGACGGTGAGGCTGTTGAACGGAACAGAGTTGGAGAAAAACGTGAGGTGGATTGTGATGGGAGACGACGACACTGTGTTTTTCCCGGAGAATCTTGTCAAGGTTTTGAGAAAGTACGATCACAATCAGTTTTATTACATCGGAAGCTCGTCGGAGAGTCATATACAGAATCTCAAGTTCTCTTACGGGATGGCTTATGGAGGAGGAGGGTTCGCGATTAGCTATCCGTTGGCTAAAGCATTAGAGAAAATGCAAGATCGTTGTATTCAGAGATATTCGGAATTGTACGGCTCCGATGATCGGATTCATGCTTGTATGTCGGAACTCGGTGTTCCTTTGACTAAGGAAGTTGGCTTCCATCAGATTGATTTATACGGGAAACTTCTGGGCCTATTATCGGCCCATCCACTGGCTCCTCTAGTATCGATCCACCATTTAGACTTAGTGGATCCAGTATTCCCAAACATGGGCCGAGTCAACGCCATGAGACGTTTCATGGTCCCCGCAAAACTCGACTCACCGAGCCTCGCGCAGCAATCAATCTGCTACGACGCGGACCACCGATGGACCGTGTCTGTCTCGTGGGGATACACAGTCCAGATCATACGTGGCGTGTTGTCAGCTAGAGAGATGGTGATCCCCACGCGCACGTTCATCGATTGGTACAAACAGGCAGACGAAAGAAGCTATGCTTTTAACACGCGTCCTATCGCCAAAAGCGCGTGTCAGCGTCCGCGAGTGTATTACCTGTCCAACGCGCTTCCTGACTTGGCTTTGCGTAGAACTGCTAGTGAATACGTGAGATGGTACGACATGTGGGAGCCTGAATGTGACTGGGATATGTCGGATCCTTCGGAATTTGAACGGGTCATTGTTTATAAGAAACCCGACCCGGATAGATGGAATAAACATAGGGCTCCGAGAAGAGATTGTTGTAGAGTATTGCCCACGACGAAGAATGGGACTATGGTAATCGATGTAGGAGCTTGTAAAGATGATGAATTTGCTGAATTCCTTGTCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF604 Malectin_like

Protein Analysis

478

Amino Acids

55.08

Weight (kDa)

8.89

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fringe PF02434 83 - 289 1.9e-17 Fringe-like
DUF604 PF04646 224 - 480 8.9e-111 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011701)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01570 AT1G01570
fragaria_vesca FvH4_7g14990 FvH4_7g14990
prunus_persica Prupe.2G174500_v2.0.a1
pyrus_communis pycom01g09760
rosa_chinensis RchiOBHm_Chr1g0357031
rosa_laevigata RLG00000028059
rosa_multiflora Rmu_sc0000166.1_g000039 Rmu_sc0013980.1_g000025 Rmu_sc0035147.1_g000001
rosa_roxburghii Rroxscaffold_4G00299110
rosa_rugosa Rorug01G0253600 Rorug01G0253700
rosa_samantha Rh1AG267400 Rh1BG235200 Rh1CG251400 Rh1DG262600
rosa_wichuraiana Rw1G023610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1290
AccB7I CCANNNNNTGG 1 cut(s) 820
AccII CGCG 8 cut(s) 626, 941, 965, 1057, 1114, 1133, 1147, 1169
AccIII TCCGGA 1 cut(s) 125
AciI CCGC 4 cut(s) 189, 915, 965, 1145
AclI AACGTT 1 cut(s) 303
AclWI GGATC 8 cut(s) 123, 136, 832, 854, 867, 1042, 1253, 1266
AcsI RAATTY 6 cut(s) 67, 101, 200, 1268, 1412, 1421
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 5 cut(s) 359, 527, 698, 1076, 1220
AfiI CCNNNNNNNGG 6 cut(s) 132, 711, 808, 820, 877, 878
AflIII ACRYGT 3 cut(s) 342, 1112, 1224
AgsI TTSAA 3 cut(s) 47, 430, 1274
AjiI CACGTC 2 cut(s) 172, 345
AluBI AGCT 6 cut(s) 232, 558, 633, 1034, 1098, 1397
AluI AGCT 6 cut(s) 232, 558, 633, 1034, 1098, 1397
Alw26I GTCTC 6 cut(s) 380, 407, 412, 468, 892, 994
AlwI GGATC 8 cut(s) 123, 136, 832, 854, 867, 1042, 1253, 1266
Aor13HI TCCGGA 1 cut(s) 125
AoxI GGCC 3 cut(s) 799, 810, 880
ApeKI GCWGC 1 cut(s) 943
ApoI RAATTY 6 cut(s) 67, 101, 200, 1268, 1412, 1421
AspLEI GCGC 4 cut(s) 943, 1059, 1133, 1171
AspS9I GGNCC 7 cut(s) 151, 799, 811, 880, 910, 967, 978
AsuC2I CCSGG 3 cut(s) 133, 497, 1304
AsuHPI GGTGA 5 cut(s) 105, 263, 430, 921, 1057
AsuII TTCGAA 1 cut(s) 308
AvaII GGWCC 4 cut(s) 151, 910, 967, 978
BamHI GGATCC 3 cut(s) 128, 859, 1258
BanII GRGCYC 1 cut(s) 1330
BauI CACGAG 2 cut(s) 397, 991
BbvI GCAGC 1 cut(s) 955
BccI CCATC 8 cut(s) 463, 595, 777, 822, 969, 1036, 1209, 1305
BceAI ACGGC 2 cut(s) 277, 715
BcgI CGANNNNNNTGC 2 cut(s) 1048, 1082
BciVI GTATCC 2 cut(s) 133, 992
BclI TGATCA 1 cut(s) 96
BcnI CCSGG 3 cut(s) 133, 497, 1304
BcoDI GTCTC 6 cut(s) 380, 407, 412, 468, 892, 994
BfaI CTAG 4 cut(s) 348, 830, 1035, 1200
BfuI GTATCC 2 cut(s) 133, 992
BisI GCNGC 2 cut(s) 189, 944
BlsI GCNGC 2 cut(s) 190, 945
Bme1390I CCNGG 3 cut(s) 133, 497, 1304
Bme18I GGWCC 4 cut(s) 151, 910, 967, 978
BmgBI CACGTC 2 cut(s) 172, 345
BmgT120I GGNCC 7 cut(s) 151, 799, 811, 880, 910, 967, 978
BmiI GGNNCC 8 cut(s) 130, 703, 825, 861, 912, 1233, 1260, 1329
BmrFI CCNGG 3 cut(s) 133, 497, 1304
BmrI ACTGGG 1 cut(s) 1255
BmuI ACTGGG 1 cut(s) 1255
Bpu14I TTCGAA 1 cut(s) 308
BpuEI CTTGAG 2 cut(s) 149, 569
BpuMI CCSGG 3 cut(s) 133, 497, 1304
Bsa29I ATCGAT 3 cut(s) 836, 1068, 1386
BsaAI YACGTR 3 cut(s) 226, 1019, 1210
BsaBI GATNNNNATC 4 cut(s) 329, 392, 534, 1046
BsaHI GRCGYC 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 380
BsaWI WCCGGW 2 cut(s) 125, 148
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 6 cut(s) 132, 711, 808, 820, 877, 878
Bse1I ACTGG 3 cut(s) 825, 863, 1250
Bse8I GATNNNNATC 4 cut(s) 329, 392, 534, 1046
BseAI TCCGGA 1 cut(s) 125
BseCI ATCGAT 3 cut(s) 836, 1068, 1386
BseGI GGATG 2 cut(s) 606, 814
BseJI GATNNNNATC 4 cut(s) 329, 392, 534, 1046
BseLI CCNNNNNNNGG 6 cut(s) 132, 711, 808, 820, 877, 878
BseNI ACTGG 3 cut(s) 825, 863, 1250
BseRI GAGGAG 5 cut(s) 67, 325, 627, 630, 816
BseXI GCAGC 1 cut(s) 955
Bsh1236I CGCG 8 cut(s) 626, 941, 965, 1057, 1114, 1133, 1147, 1169
Bsh1285I CGRYCG 1 cut(s) 383
BshFI GGCC 3 cut(s) 801, 812, 882
BshVI ATCGAT 3 cut(s) 836, 1068, 1386
BsiEI CGRYCG 1 cut(s) 383
BsiSI CCGG 5 cut(s) 126, 132, 149, 497, 1304
BslFI GGGAC 2 cut(s) 896, 1387
BslI CCNNNNNNNGG 6 cut(s) 132, 711, 808, 820, 877, 878
BsmAI GTCTC 6 cut(s) 380, 407, 412, 468, 892, 994
BsmBI CGTCTC 4 cut(s) 407, 412, 468, 892
BsmFI GGGAC 2 cut(s) 896, 1387
BsnI GGCC 3 cut(s) 801, 812, 882
Bso31I GGTCTC 1 cut(s) 380
Bsp119I TTCGAA 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 1330
Bsp13I TCCGGA 1 cut(s) 125
Bsp68I TCGCGA 1 cut(s) 626
BspACI CCGC 4 cut(s) 189, 915, 965, 1145
BspANI GGCC 3 cut(s) 801, 812, 882
BspDI ATCGAT 3 cut(s) 836, 1068, 1386
BspEI TCCGGA 1 cut(s) 125
BspFNI CGCG 8 cut(s) 626, 941, 965, 1057, 1114, 1133, 1147, 1169
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 8 cut(s) 130, 703, 825, 861, 912, 1233, 1260, 1329
BspPI GGATC 8 cut(s) 123, 136, 832, 854, 867, 1042, 1253, 1266
BspT104I TTCGAA 1 cut(s) 308
BspTNI GGTCTC 1 cut(s) 380
BsrI ACTGG 3 cut(s) 825, 863, 1250
BssNI GRCGYC 1 cut(s) 264
BssSI CACGAG 2 cut(s) 397, 991
Bst2BI CACGAG 2 cut(s) 397, 991
Bst4CI ACNGT 6 cut(s) 215, 251, 418, 487, 982, 1006
Bst6I CTCTTC 4 cut(s) 41, 48, 85, 1330
BstACI GRCGYC 1 cut(s) 264
BstBAI YACGTR 3 cut(s) 226, 1019, 1210
BstBI TTCGAA 1 cut(s) 308
BstDEI CTNAG 2 cut(s) 753, 853
BstF5I GGATG 2 cut(s) 606, 814
BstFNI CGCG 8 cut(s) 626, 941, 965, 1057, 1114, 1133, 1147, 1169
BstHHI GCGC 4 cut(s) 943, 1059, 1133, 1171
BstMAI GTCTC 6 cut(s) 380, 407, 412, 468, 892, 994
BstMCI CGRYCG 1 cut(s) 383
BstMWI GCNNNNNNNGC 2 cut(s) 194, 1130
BstNSI RCATGY 1 cut(s) 1228
BstSCI CCNGG 3 cut(s) 131, 495, 1302
BstUI CGCG 8 cut(s) 626, 941, 965, 1057, 1114, 1133, 1147, 1169
BstV1I GCAGC 1 cut(s) 955
BstX2I RGATCY 3 cut(s) 128, 859, 1258
BstYI RGATCY 3 cut(s) 128, 859, 1258
Bsu15I ATCGAT 3 cut(s) 836, 1068, 1386
BsuI GTATCC 2 cut(s) 133, 992
BsuRI GGCC 3 cut(s) 801, 812, 882
BsuTUI ATCGAT 3 cut(s) 836, 1068, 1386
BtrI CACGTC 2 cut(s) 172, 345
BtsCI GGATG 2 cut(s) 606, 814
BtsIMutI CAGTG 2 cut(s) 483, 818
BtuMI TCGCGA 1 cut(s) 626
CciI TCATGA 1 cut(s) 142
CfoI GCGC 4 cut(s) 943, 1059, 1133, 1171
Cfr13I GGNCC 7 cut(s) 151, 799, 811, 880, 910, 967, 978
ClaI ATCGAT 3 cut(s) 836, 1068, 1386
CseI GACGC 4 cut(s) 253, 971, 1103, 1130
Csp6I GTAC 5 cut(s) 358, 526, 697, 1075, 1219
CviAII CATG 6 cut(s) 143, 719, 877, 895, 907, 1225
CviQI GTAC 5 cut(s) 358, 526, 697, 1075, 1219
DdeI CTNAG 2 cut(s) 753, 853
DraI TTTAAA 1 cut(s) 66
Eam1104I CTCTTC 4 cut(s) 41, 48, 85, 1330
EarI CTCTTC 4 cut(s) 41, 48, 85, 1330
Eco24I GRGCYC 1 cut(s) 1330
Eco31I GGTCTC 1 cut(s) 380
Eco47I GGWCC 4 cut(s) 151, 910, 967, 978
EcoRI GAATTC 1 cut(s) 1421
EcoT38I GRGCYC 1 cut(s) 1330
Esp3I CGTCTC 4 cut(s) 407, 412, 468, 892
FaeI CATG 6 cut(s) 146, 722, 880, 898, 910, 1228
FalI AAGNNNNNCTT 2 cut(s) 1087, 1119
FaqI GGGAC 2 cut(s) 896, 1387
FatI CATG 6 cut(s) 142, 718, 876, 894, 906, 1224
FauI CCCGC 1 cut(s) 922
FbaI TGATCA 1 cut(s) 96
Fnu4HI GCNGC 2 cut(s) 189, 944
FokI GGATG 2 cut(s) 613, 801
FriOI GRGCYC 1 cut(s) 1330
Fsp4HI GCNGC 2 cut(s) 189, 944
FspBI CTAG 4 cut(s) 348, 830, 1035, 1200
GlaI GCGC 4 cut(s) 942, 1058, 1132, 1170
GluI GCNGC 2 cut(s) 189, 944
HaeIII GGCC 3 cut(s) 801, 812, 882
HapII CCGG 5 cut(s) 126, 132, 149, 497, 1304
HgaI GACGC 4 cut(s) 253, 971, 1103, 1130
HhaI GCGC 4 cut(s) 943, 1059, 1133, 1171
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 6 cut(s) 146, 722, 880, 898, 910, 1228
Hin6I GCGC 4 cut(s) 941, 1057, 1131, 1169
HinP1I GCGC 4 cut(s) 941, 1057, 1131, 1169
HincII GTYRAC 1 cut(s) 889
HindII GTYRAC 1 cut(s) 889
HpaII CCGG 5 cut(s) 126, 132, 149, 497, 1304
HphI GGTGA 5 cut(s) 105, 263, 430, 921, 1057
Hpy166II GTNNAC 1 cut(s) 889
Hpy188III TCNNGA 7 cut(s) 126, 143, 205, 397, 625, 1009, 1175
Hpy8I GTNNAC 1 cut(s) 889
Hpy99I CGWCG 7 cut(s) 122, 176, 269, 482, 565, 965, 1366
HpyAV CCTTC 1 cut(s) 1272
HpyCH4III ACNGT 6 cut(s) 215, 251, 418, 487, 982, 1006
HpyCH4IV ACGT 9 cut(s) 171, 225, 303, 344, 453, 901, 1018, 1061, 1209
HpyCH4V TGCA 1 cut(s) 664
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 1130
HpyF3I CTNAG 2 cut(s) 753, 853
HpySE526I ACGT 9 cut(s) 171, 225, 303, 344, 453, 901, 1018, 1061, 1209
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 6 cut(s) 146, 722, 880, 898, 910, 1228
HspAI GCGC 4 cut(s) 941, 1057, 1131, 1169
Kpn2I TCCGGA 1 cut(s) 125
Ksp22I TGATCA 1 cut(s) 96
LmnI GCTCC 5 cut(s) 707, 829, 1231, 1333, 1394
Lsp1109I GCAGC 1 cut(s) 955
MaeI CTAG 4 cut(s) 348, 830, 1035, 1200
MaeII ACGT 9 cut(s) 171, 225, 303, 344, 453, 901, 1018, 1061, 1209
MaeIII GTNAC 1 cut(s) 1241
MboII GAAGA 7 cut(s) 7, 28, 35, 72, 75, 1347, 1378
MflI RGATCY 3 cut(s) 128, 859, 1258
MhlI GDGCHC 1 cut(s) 1330
MluCI AATT 9 cut(s) 21, 47, 67, 101, 200, 692, 1268, 1412, 1421
MluI ACGCGT 1 cut(s) 1112
MlyI GAGTC 3 cut(s) 577, 894, 920
MmeI TCCRAC 6 cut(s) 363, 423, 543, 711, 1188, 1236
MroI TCCGGA 1 cut(s) 125
MseI TTAA 4 cut(s) 20, 65, 288, 1107
MspI CCGG 5 cut(s) 126, 132, 149, 497, 1304
MspR9I CCNGG 3 cut(s) 133, 497, 1304
MvnI CGCG 8 cut(s) 626, 941, 965, 1057, 1114, 1133, 1147, 1169
MwoI GCNNNNNNNGC 2 cut(s) 194, 1130
NciI CCSGG 3 cut(s) 133, 497, 1304
NlaIII CATG 6 cut(s) 146, 722, 880, 898, 910, 1228
NlaIV GGNNCC 8 cut(s) 130, 703, 825, 861, 912, 1233, 1260, 1329
NmeAIII GCCGAG 1 cut(s) 908
NmuCI GTSAC 1 cut(s) 1241
NruI TCGCGA 1 cut(s) 626
NspI RCATGY 1 cut(s) 1228
NspV TTCGAA 1 cut(s) 308
PagI TCATGA 1 cut(s) 142
PciI ACATGT 1 cut(s) 1224
PfeI GAWTC 7 cut(s) 183, 330, 393, 402, 502, 580, 715
PflFI GACNNNGTC 1 cut(s) 982
PflMI CCANNNNNTGG 1 cut(s) 820
PfoI TCCNGGA 1 cut(s) 495
PkrI GCNGC 2 cut(s) 190, 945
Ple19I CGATCG 1 cut(s) 383
PleI GAGTC 3 cut(s) 576, 893, 920
PpsI GAGTC 3 cut(s) 576, 893, 920
Ppu21I YACGTR 3 cut(s) 226, 1019, 1210
PscI ACATGT 1 cut(s) 1224
PsiI TTATAA 1 cut(s) 1290
Psp1406I AACGTT 1 cut(s) 303
PspN4I GGNNCC 8 cut(s) 130, 703, 825, 861, 912, 1233, 1260, 1329
PspPI GGNCC 7 cut(s) 151, 799, 811, 880, 910, 967, 978
PsuI RGATCY 3 cut(s) 128, 859, 1258
PsyI GACNNNGTC 1 cut(s) 982
PvuI CGATCG 1 cut(s) 383
RruI TCGCGA 1 cut(s) 626
RsaI GTAC 5 cut(s) 359, 527, 698, 1076, 1220
RsaNI GTAC 5 cut(s) 358, 526, 697, 1075, 1219
SaqAI TTAA 4 cut(s) 20, 65, 288, 1107
SatI GCNGC 2 cut(s) 189, 944
Sau96I GGNCC 7 cut(s) 151, 799, 811, 880, 910, 967, 978
SchI GAGTC 3 cut(s) 577, 894, 920
ScrFI CCNGG 3 cut(s) 133, 497, 1304
SduI GDGCHC 1 cut(s) 1330
SfuI TTCGAA 1 cut(s) 308
SinI GGWCC 4 cut(s) 151, 910, 967, 978
SmlI CTYRAG 2 cut(s) 164, 584
SmoI CTYRAG 2 cut(s) 164, 584
Sse9I AATT 9 cut(s) 21, 47, 67, 101, 200, 692, 1268, 1412, 1421
SsiI CCGC 4 cut(s) 189, 915, 965, 1145
SspMI CTAG 4 cut(s) 348, 830, 1035, 1200
StyD4I CCNGG 3 cut(s) 131, 495, 1302
TaaI ACNGT 6 cut(s) 215, 251, 418, 487, 982, 1006
TaiI ACGT 9 cut(s) 174, 228, 306, 347, 456, 904, 1021, 1064, 1212
TaqI TCGA 6 cut(s) 5, 308, 836, 924, 1068, 1386
TasI AATT 9 cut(s) 21, 47, 67, 101, 200, 692, 1268, 1412, 1421
TatI WGTACW 1 cut(s) 357
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 7 cut(s) 183, 330, 393, 402, 502, 580, 715
Tru1I TTAA 4 cut(s) 20, 65, 288, 1107
Tru9I TTAA 4 cut(s) 20, 65, 288, 1107
TscAI CASTG 2 cut(s) 490, 825
TseFI GTSAC 1 cut(s) 1241
TseI GCWGC 1 cut(s) 943
Tsp45I GTSAC 1 cut(s) 1241
TspDTI ATGAA 8 cut(s) 61, 131, 159, 272, 707, 895, 1054, 1425
TspGWI ACGGA 2 cut(s) 447, 627
TspRI CASTG 2 cut(s) 490, 825
Tth111I GACNNNGTC 1 cut(s) 982
Van91I CCANNNNNTGG 1 cut(s) 820
VpaK11BI GGWCC 4 cut(s) 151, 910, 967, 978
XapI RAATTY 6 cut(s) 67, 101, 200, 1268, 1412, 1421
XceI RCATGY 1 cut(s) 1228
XcmI CCANNNNNNNNNTGG 1 cut(s) 1016
XspI CTAG 4 cut(s) 348, 830, 1035, 1200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.