Rorug01G0253700

Fringe-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0011701
Physical Location & Seq
Forward (+)
36287311 .. 36288322
1012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0253700.1

Sequence Viewer

Length: 624 bp
ATGTCGGCCATTATCCTCCTCCTCCTCATCAACATCGCCGCCACTTCCGCTGCCCCGGCCCCGGCTCCGGTGGCACCTCCCGCCACCAAGTACATTAACCACACCGTGGGTGGGCCCATCGGGTGGTTCTTCAACTCCACCTCCAACACTTCCTTCACTAATTACTCCTCCTGGGCTGCTTCTCAGACCTTCAACCTCGGGGACTATCTAGTTTTCAACACTGAGAACCAGACGGTGATTGATACCCAAAACGCGACGACGTACCGTAGCTGCACAGCGGACGACACGTCGGACGAGACCACTTTCGTCTGGGGGGATGATACTGCGGGGAAGAAGACCATTGTGGTGCCATTGGTTACCGAGGGTGCCAACTACTACTTCTCCGGCAGCGGCGACGGCGAGCAGTGCCAGCAAGGCATGGCCTTCGCGATCGAAGTCAATCACGGCCTCGGCTTGCCGCCGATTCTCAATCAGCCTCCACCTCCGCCGTACACGGAGCCGCCGGCTCAGTCGCCGCCGGGAACTGTCGACGGAACTCAGCCGTCGGGGAATAGTGGGTTCAGAAGCGGCGCTAGTTTGAGCGGAGGGTTGTTAGTTGCGTTTATGCTAGTTCTCAATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF604 Malectin_like

Protein Analysis

207

Amino Acids

21.64

Weight (kDa)

4.17

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 50 - 140 1.1e-14 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011701)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01570 AT1G01570
fragaria_vesca FvH4_7g14990 FvH4_7g14990
prunus_persica Prupe.2G174500_v2.0.a1
pyrus_communis pycom01g09760
rosa_chinensis RchiOBHm_Chr1g0357031
rosa_laevigata RLG00000028059
rosa_multiflora Rmu_sc0000166.1_g000039 Rmu_sc0013980.1_g000025 Rmu_sc0035147.1_g000001
rosa_roxburghii Rroxscaffold_4G00299110
rosa_rugosa Rorug01G0253600 Rorug01G0253700
rosa_samantha Rh1AG267400 Rh1BG235200 Rh1CG251400 Rh1DG262600
rosa_wichuraiana Rw1G023610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 73, 346, 365
AccB7I CCANNNNNTGG 2 cut(s) 106, 123
AccBSI CCGCTC 1 cut(s) 582
AccI GTMKAC 1 cut(s) 528
AccII CGCG 2 cut(s) 254, 428
AcoI YGGCCR 1 cut(s) 6
AdeI CACNNNGTG 1 cut(s) 106
AfaI GTAC 3 cut(s) 92, 263, 491
AfiI CCNNNNNNNGG 5 cut(s) 61, 67, 106, 111, 123
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 3 cut(s) 133, 193, 217
AhdI GACNNNNNGTC 1 cut(s) 286
AjiI CACGTC 1 cut(s) 288
AjnI CCWGG 1 cut(s) 170
AjuI GAANNNNNNNTTGG 4 cut(s) 137, 169, 362, 394
AluBI AGCT 1 cut(s) 270
AluI AGCT 1 cut(s) 270
Alw26I GTCTC 1 cut(s) 290
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 5 cut(s) 6, 57, 113, 420, 445
ApaI GGGCCC 1 cut(s) 117
ApeKI GCWGC 4 cut(s) 50, 176, 270, 387
AspLEI GCGC 1 cut(s) 572
AspS9I GGNCC 3 cut(s) 58, 113, 114
AsuC2I CCSGG 3 cut(s) 56, 62, 519
AsuHPI GGTGA 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 117
BanI GGYRCC 3 cut(s) 73, 346, 365
BanII GRGCYC 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 341
BbvI GCAGC 4 cut(s) 37, 163, 257, 399
BccI CCATC 1 cut(s) 125
BceAI ACGGC 4 cut(s) 412, 460, 472, 526
BcgI CGANNNNNNTGC 2 cut(s) 406, 440
BciT130I CCWGG 1 cut(s) 172
BcnI CCSGG 3 cut(s) 56, 62, 519
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 3 cut(s) 209, 573, 608
BfoI RGCGCY 1 cut(s) 573
BglI GCCNNNNNGGC 1 cut(s) 414
Bme1390I CCNGG 4 cut(s) 56, 62, 172, 519
BmeRI GACNNNNNGTC 1 cut(s) 286
BmeT110I CYCGRG 1 cut(s) 197
BmgBI CACGTC 1 cut(s) 288
BmgT120I GGNCC 3 cut(s) 58, 113, 114
BmiI GGNNCC 7 cut(s) 60, 66, 75, 115, 348, 367, 498
BmrFI CCNGG 4 cut(s) 56, 62, 172, 519
BpiI GAAGAC 1 cut(s) 341
BpuMI CCSGG 3 cut(s) 56, 62, 519
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 7 cut(s) 54, 60, 105, 171, 196, 360, 448
BsaWI WCCGGW 1 cut(s) 67
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 365, 395
Bsc4I CCNNNNNNNGG 5 cut(s) 61, 67, 106, 111, 123
Bse118I RCCGGY 1 cut(s) 502
BseBI CCWGG 1 cut(s) 172
BseDI CCNNGG 7 cut(s) 54, 60, 105, 171, 196, 360, 448
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 5 cut(s) 61, 67, 106, 111, 123
BseMII CTCAG 4 cut(s) 197, 213, 521, 551
BseRI GAGGAG 4 cut(s) 8, 11, 14, 157
BseSI GKGCMC 1 cut(s) 117
BseXI GCAGC 4 cut(s) 37, 163, 257, 399
BsgI GTGCAG 1 cut(s) 256
Bsh1236I CGCG 2 cut(s) 254, 428
Bsh1285I CGRYCG 1 cut(s) 432
BshFI GGCC 5 cut(s) 8, 59, 115, 422, 447
BshNI GGYRCC 3 cut(s) 73, 346, 365
BsiEI CGRYCG 1 cut(s) 432
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 6 cut(s) 56, 62, 68, 384, 503, 518
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 5 cut(s) 61, 67, 106, 111, 123
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 5 cut(s) 8, 59, 115, 422, 447
Bso31I GGTCTC 1 cut(s) 290
BsoBI CYCGRG 1 cut(s) 197
Bsp120I GGGCCC 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 1 cut(s) 429
Bsp68I TCGCGA 1 cut(s) 428
BspANI GGCC 5 cut(s) 8, 59, 115, 422, 447
BspCNI CTCAG 4 cut(s) 196, 214, 520, 550
BspFNI CGCG 2 cut(s) 254, 428
BspLI GGNNCC 7 cut(s) 60, 66, 75, 115, 348, 367, 498
BspT107I GGYRCC 3 cut(s) 73, 346, 365
BspTNI GGTCTC 1 cut(s) 290
BsrBI CCGCTC 1 cut(s) 582
BsrFI RCCGGY 1 cut(s) 502
BssAI RCCGGY 1 cut(s) 502
BssECI CCNNGG 7 cut(s) 54, 60, 105, 171, 196, 360, 448
BssMI GATC 1 cut(s) 429
Bst2UI CCWGG 1 cut(s) 172
Bst4CI ACNGT 4 cut(s) 106, 235, 266, 526
BstC8I GCNNGC 4 cut(s) 401, 410, 455, 504
BstDEI CTNAG 4 cut(s) 183, 222, 507, 537
BstDSI CCRYGG 1 cut(s) 105
BstEII GGTNACC 1 cut(s) 355
BstF5I GGATG 1 cut(s) 322
BstFNI CGCG 2 cut(s) 254, 428
BstH2I RGCGCY 1 cut(s) 573
BstHHI GCGC 1 cut(s) 572
BstKTI GATC 1 cut(s) 432
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 1 cut(s) 429
BstMCI CGRYCG 1 cut(s) 432
BstMWI GCNNNNNNNGC 8 cut(s) 47, 56, 71, 80, 396, 405, 409, 414
BstNI CCWGG 1 cut(s) 172
BstPI GGTNACC 1 cut(s) 355
BstSCI CCNGG 4 cut(s) 54, 60, 170, 517
BstSLI GKGCMC 1 cut(s) 117
BstUI CGCG 2 cut(s) 254, 428
BstV1I GCAGC 4 cut(s) 37, 163, 257, 399
BstV2I GAAGAC 1 cut(s) 341
BsuRI GGCC 5 cut(s) 8, 59, 115, 422, 447
BtgI CCRYGG 1 cut(s) 105
BtgZI GCGATG 1 cut(s) 19
BtrI CACGTC 1 cut(s) 288
BtsCI GGATG 1 cut(s) 322
BtsI GCAGTG 1 cut(s) 410
BtsIMutI CAGTG 2 cut(s) 219, 410
BtuMI TCGCGA 1 cut(s) 428
Cac8I GCNNGC 4 cut(s) 401, 410, 455, 504
CfoI GCGC 1 cut(s) 572
Cfr10I RCCGGY 1 cut(s) 502
Cfr13I GGNCC 3 cut(s) 58, 113, 114
Csp6I GTAC 3 cut(s) 91, 262, 490
CviAII CATG 1 cut(s) 418
CviQI GTAC 3 cut(s) 91, 262, 490
DdeI CTNAG 4 cut(s) 183, 222, 507, 537
DpnI GATC 1 cut(s) 431
DpnII GATC 1 cut(s) 429
DraIII CACNNNGTG 1 cut(s) 106
DriI GACNNNNNGTC 1 cut(s) 286
EaeI YGGCCR 1 cut(s) 6
Eam1105I GACNNNNNGTC 1 cut(s) 286
EciI GGCGGA 1 cut(s) 474
Eco24I GRGCYC 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 197
Eco91I GGTNACC 1 cut(s) 355
EcoO65I GGTNACC 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 170
EcoT38I GRGCYC 1 cut(s) 117
FaeI CATG 1 cut(s) 421
FaiI YATR 2 cut(s) 419, 605
FaqI GGGAC 1 cut(s) 215
FatI CATG 1 cut(s) 417
FauI CCCGC 2 cut(s) 88, 319
FblI GTMKAC 1 cut(s) 528
FokI GGATG 1 cut(s) 329
FriOI GRGCYC 1 cut(s) 117
FspBI CTAG 3 cut(s) 209, 573, 608
GlaI GCGC 1 cut(s) 571
HaeII RGCGCY 1 cut(s) 573
HaeIII GGCC 5 cut(s) 8, 59, 115, 422, 447
HapII CCGG 6 cut(s) 56, 62, 68, 384, 503, 518
HhaI GCGC 1 cut(s) 572
Hin1II CATG 1 cut(s) 421
Hin6I GCGC 1 cut(s) 570
HinP1I GCGC 1 cut(s) 570
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HinfI GANTC 1 cut(s) 463
HpaII CCGG 6 cut(s) 56, 62, 68, 384, 503, 518
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 2 cut(s) 492, 529
Hpy188I TCNGA 3 cut(s) 186, 292, 563
Hpy188III TCNNGA 1 cut(s) 427
Hpy8I GTNNAC 2 cut(s) 492, 529
Hpy99I CGWCG 6 cut(s) 259, 262, 292, 398, 533, 547
HpyAV CCTTC 3 cut(s) 163, 199, 433
HpyCH4III ACNGT 4 cut(s) 106, 235, 266, 526
HpyCH4IV ACGT 2 cut(s) 260, 287
HpyCH4V TGCA 1 cut(s) 273
HpyF10VI GCNNNNNNNGC 8 cut(s) 47, 56, 71, 80, 396, 405, 409, 414
HpyF3I CTNAG 4 cut(s) 183, 222, 507, 537
HpySE526I ACGT 2 cut(s) 260, 287
Hsp92II CATG 1 cut(s) 421
HspAI GCGC 1 cut(s) 570
KroI GCCGGC 1 cut(s) 502
KroNI GCCGGC 1 cut(s) 504
Kzo9I GATC 1 cut(s) 429
LmnI GCTCC 2 cut(s) 70, 496
Lsp1109I GCAGC 4 cut(s) 37, 163, 257, 399
MaeI CTAG 3 cut(s) 209, 573, 608
MaeII ACGT 2 cut(s) 260, 287
MaeIII GTNAC 1 cut(s) 355
MalI GATC 1 cut(s) 431
MbiI CCGCTC 1 cut(s) 582
MboI GATC 1 cut(s) 429
MboII GAAGA 3 cut(s) 121, 343, 346
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 1 cut(s) 160
MmeI TCCRAC 2 cut(s) 168, 270
MroNI GCCGGC 1 cut(s) 502
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 344
MspA1I CMGCKG 3 cut(s) 50, 278, 390
MspI CCGG 6 cut(s) 56, 62, 68, 384, 503, 518
MspR9I CCNGG 4 cut(s) 56, 62, 172, 519
MvaI CCWGG 1 cut(s) 172
MvnI CGCG 2 cut(s) 254, 428
MwoI GCNNNNNNNGC 8 cut(s) 47, 56, 71, 80, 396, 405, 409, 414
NaeI GCCGGC 1 cut(s) 504
NciI CCSGG 3 cut(s) 56, 62, 519
NdeII GATC 1 cut(s) 429
NgoMIV GCCGGC 1 cut(s) 502
NlaIII CATG 1 cut(s) 421
NlaIV GGNNCC 7 cut(s) 60, 66, 75, 115, 348, 367, 498
NmeAIII GCCGAG 1 cut(s) 429
NruI TCGCGA 1 cut(s) 428
PdiI GCCGGC 1 cut(s) 504
PfeI GAWTC 1 cut(s) 463
PflMI CCANNNNNTGG 2 cut(s) 106, 123
Ple19I CGATCG 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 170
PspEI GGTNACC 1 cut(s) 355
PspGI CCWGG 1 cut(s) 170
PspN4I GGNNCC 7 cut(s) 60, 66, 75, 115, 348, 367, 498
PspOMI GGGCCC 1 cut(s) 113
PspPI GGNCC 3 cut(s) 58, 113, 114
PvuI CGATCG 1 cut(s) 432
RruI TCGCGA 1 cut(s) 428
RsaI GTAC 3 cut(s) 92, 263, 491
RsaNI GTAC 3 cut(s) 91, 262, 490
RseI CAYNNNNRTG 1 cut(s) 344
SalI GTCGAC 1 cut(s) 527
SaqAI TTAA 1 cut(s) 96
Sau3AI GATC 1 cut(s) 429
Sau96I GGNCC 3 cut(s) 58, 113, 114
ScrFI CCNGG 4 cut(s) 56, 62, 172, 519
SduI GDGCHC 1 cut(s) 117
SetI ASST 8 cut(s) 79, 143, 191, 198, 263, 272, 290, 484
SmiMI CAYNNNNRTG 1 cut(s) 344
Sse9I AATT 1 cut(s) 160
SspMI CTAG 3 cut(s) 209, 573, 608
StyD4I CCNGG 4 cut(s) 54, 60, 170, 517
TaaI ACNGT 4 cut(s) 106, 235, 266, 526
TaiI ACGT 2 cut(s) 263, 290
TaqI TCGA 2 cut(s) 432, 528
TasI AATT 1 cut(s) 160
TatI WGTACW 1 cut(s) 90
TauI GCSGC 6 cut(s) 41, 393, 460, 502, 517, 570
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 2 cut(s) 226, 410
TseI GCWGC 4 cut(s) 50, 176, 270, 387
TspGWI ACGGA 2 cut(s) 509, 546
TspRI CASTG 2 cut(s) 226, 410
Van91I CCANNNNNTGG 2 cut(s) 106, 123
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 528
XspI CTAG 3 cut(s) 209, 573, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.