Fringe-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G01570 AT1G01570 |
| fragaria_vesca | FvH4_7g14990 FvH4_7g14990 |
| prunus_persica | Prupe.2G174500_v2.0.a1 |
| pyrus_communis | pycom01g09760 |
| rosa_chinensis | RchiOBHm_Chr1g0357031 |
| rosa_laevigata | RLG00000028059 |
| rosa_multiflora | Rmu_sc0000166.1_g000039 Rmu_sc0013980.1_g000025 Rmu_sc0035147.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00299110 |
| rosa_rugosa | Rorug01G0253600 Rorug01G0253700 |
| rosa_samantha | Rh1AG267400 Rh1BG235200 Rh1CG251400 Rh1DG262600 |
| rosa_wichuraiana | Rw1G023610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 729 |
| AccB1I | GGYRCC | 1 cut(s) | 729 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 270 |
| AccBSI | CCGCTC | 1 cut(s) | 441 |
| AccI | GTMKAC | 1 cut(s) | 828 |
| AccII | CGCG | 1 cut(s) | 986 |
| AciI | CCGC | 4 cut(s) | 380, 439, 1097, 1346 |
| AclWI | GGATC | 2 cut(s) | 925, 938 |
| AcoI | YGGCCR | 1 cut(s) | 540 |
| AcuI | CTGAAG | 1 cut(s) | 746 |
| AdeI | CACNNNGTG | 1 cut(s) | 1321 |
| AfaI | GTAC | 7 cut(s) | 139, 183, 419, 731, 743, 1121, 1231 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 270, 898, 922, 945, 1170 |
| AgeI | ACCGGT | 1 cut(s) | 1014 |
| AgsI | TTSAA | 6 cut(s) | 388, 415, 905, 1055, 1153, 1430 |
| AjnI | CCWGG | 2 cut(s) | 1019, 1100 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 897, 929 |
| AluBI | AGCT | 8 cut(s) | 26, 96, 298, 837, 857, 955, 967, 1130 |
| AluI | AGCT | 8 cut(s) | 26, 96, 298, 837, 857, 955, 967, 1130 |
| Alw21I | GWGCWC | 2 cut(s) | 957, 1326 |
| Alw26I | GTCTC | 1 cut(s) | 301 |
| AlwI | GGATC | 2 cut(s) | 925, 938 |
| Ama87I | CYCGRG | 2 cut(s) | 950, 1080 |
| AoxI | GGCC | 5 cut(s) | 272, 325, 540, 844, 1158 |
| ApeKI | GCWGC | 2 cut(s) | 254, 854 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 518, 550 |
| AsiGI | ACCGGT | 1 cut(s) | 1014 |
| Asp718I | GGTACC | 1 cut(s) | 729 |
| AspLEI | GCGC | 1 cut(s) | 988 |
| AspS9I | GGNCC | 5 cut(s) | 48, 1017, 1023, 1104, 1159 |
| AsuC2I | CCSGG | 1 cut(s) | 460 |
| AsuHPI | GGTGA | 2 cut(s) | 410, 806 |
| AvaI | CYCGRG | 2 cut(s) | 950, 1080 |
| AvaII | GGWCC | 4 cut(s) | 48, 1017, 1023, 1104 |
| BamHI | GGATCC | 1 cut(s) | 930 |
| BanI | GGYRCC | 1 cut(s) | 729 |
| BanII | GRGCYC | 2 cut(s) | 957, 984 |
| Bbv12I | GWGCWC | 2 cut(s) | 957, 1326 |
| BbvCI | CCTCAGC | 1 cut(s) | 259 |
| BbvI | GCAGC | 2 cut(s) | 266, 866 |
| BccI | CCATC | 2 cut(s) | 484, 917 |
| BceAI | ACGGC | 4 cut(s) | 367, 760, 962, 1173 |
| BciT130I | CCWGG | 2 cut(s) | 1021, 1102 |
| BciVI | GTATCC | 1 cut(s) | 1399 |
| BclI | TGATCA | 2 cut(s) | 574, 1132 |
| BcnI | CCSGG | 1 cut(s) | 460 |
| BcoDI | GTCTC | 1 cut(s) | 301 |
| BfaI | CTAG | 6 cut(s) | 338, 686, 698, 851, 875, 893 |
| BfmI | CTRYAG | 1 cut(s) | 1245 |
| BfuI | GTATCC | 1 cut(s) | 1399 |
| BisI | GCNGC | 4 cut(s) | 255, 439, 855, 1097 |
| BlsI | GCNGC | 4 cut(s) | 256, 440, 856, 1098 |
| Bme1390I | CCNGG | 3 cut(s) | 460, 1021, 1102 |
| Bme18I | GGWCC | 4 cut(s) | 48, 1017, 1023, 1104 |
| BmeT110I | CYCGRG | 2 cut(s) | 950, 1080 |
| BmgT120I | GGNCC | 5 cut(s) | 48, 1017, 1023, 1104, 1159 |
| BmiI | GGNNCC | 5 cut(s) | 731, 748, 932, 1161, 1417 |
| BmrFI | CCNGG | 3 cut(s) | 460, 1021, 1102 |
| Bpu10I | CCTNAGC | 1 cut(s) | 259 |
| BpuMI | CCSGG | 1 cut(s) | 460 |
| BsaI | GGTCTC | 1 cut(s) | 301 |
| BsaJI | CCNNGG | 4 cut(s) | 1074, 1100, 1367, 1419 |
| BsaWI | WCCGGW | 1 cut(s) | 1014 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1363, 1393 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 270, 898, 922, 945, 1170 |
| Bse118I | RCCGGY | 2 cut(s) | 407, 1014 |
| Bse1I | ACTGG | 4 cut(s) | 583, 817, 863, 1121 |
| Bse3DI | GCAATG | 1 cut(s) | 249 |
| BseBI | CCWGG | 2 cut(s) | 1021, 1102 |
| BseDI | CCNNGG | 4 cut(s) | 1074, 1100, 1367, 1419 |
| BseGI | GGATG | 2 cut(s) | 495, 859 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 270, 898, 922, 945, 1170 |
| BseMI | GCAATG | 1 cut(s) | 249 |
| BseMII | CTCAG | 3 cut(s) | 273, 408, 768 |
| BseNI | ACTGG | 4 cut(s) | 583, 817, 863, 1121 |
| BseRI | GAGGAG | 2 cut(s) | 68, 1384 |
| BseXI | GCAGC | 2 cut(s) | 266, 866 |
| BseYI | CCCAGC | 2 cut(s) | 22, 484 |
| Bsh1236I | CGCG | 1 cut(s) | 986 |
| BshFI | GGCC | 5 cut(s) | 274, 327, 542, 846, 1160 |
| BshNI | GGYRCC | 1 cut(s) | 729 |
| BshTI | ACCGGT | 1 cut(s) | 1014 |
| BsiHKAI | GWGCWC | 2 cut(s) | 957, 1326 |
| BsiHKCI | CYCGRG | 2 cut(s) | 950, 1080 |
| BsiSI | CCGG | 3 cut(s) | 408, 460, 1015 |
| BslFI | GGGAC | 2 cut(s) | 533, 1370 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 270, 898, 922, 945, 1170 |
| BsmAI | GTCTC | 1 cut(s) | 301 |
| BsmFI | GGGAC | 2 cut(s) | 533, 1370 |
| BsmI | GAATGC | 3 cut(s) | 1278, 1286, 1445 |
| BsnI | GGCC | 5 cut(s) | 274, 327, 542, 846, 1160 |
| Bso31I | GGTCTC | 1 cut(s) | 301 |
| BsoBI | CYCGRG | 2 cut(s) | 950, 1080 |
| Bsp1286I | GDGCHC | 3 cut(s) | 957, 984, 1326 |
| Bsp143I | GATC | 5 cut(s) | 84, 574, 754, 930, 1132 |
| Bsp19I | CCATGG | 1 cut(s) | 1419 |
| BspACI | CCGC | 4 cut(s) | 380, 439, 1097, 1346 |
| BspANI | GGCC | 5 cut(s) | 274, 327, 542, 846, 1160 |
| BspCNI | CTCAG | 3 cut(s) | 272, 407, 769 |
| BspFNI | CGCG | 1 cut(s) | 986 |
| BspLI | GGNNCC | 5 cut(s) | 731, 748, 932, 1161, 1417 |
| BspPI | GGATC | 2 cut(s) | 925, 938 |
| BspT107I | GGYRCC | 1 cut(s) | 729 |
| BspTNI | GGTCTC | 1 cut(s) | 301 |
| BsrBI | CCGCTC | 1 cut(s) | 441 |
| BsrDI | GCAATG | 1 cut(s) | 249 |
| BsrFI | RCCGGY | 2 cut(s) | 407, 1014 |
| BsrI | ACTGG | 4 cut(s) | 583, 817, 863, 1121 |
| BssAI | RCCGGY | 2 cut(s) | 407, 1014 |
| BssECI | CCNNGG | 4 cut(s) | 1074, 1100, 1367, 1419 |
| BssMI | GATC | 5 cut(s) | 84, 574, 754, 930, 1132 |
| BssNAI | GTATAC | 1 cut(s) | 829 |
| BssT1I | CCWWGG | 1 cut(s) | 1419 |
| Bst1107I | GTATAC | 1 cut(s) | 829 |
| Bst2UI | CCWGG | 2 cut(s) | 1021, 1102 |
| Bst4CI | ACNGT | 4 cut(s) | 532, 1027, 1191, 1379 |
| BstC8I | GCNNGC | 2 cut(s) | 984, 1176 |
| BstDEI | CTNAG | 3 cut(s) | 259, 394, 777 |
| BstDSI | CCRYGG | 1 cut(s) | 1419 |
| BstF5I | GGATG | 2 cut(s) | 495, 859 |
| BstFNI | CGCG | 1 cut(s) | 986 |
| BstHHI | GCGC | 1 cut(s) | 988 |
| BstKTI | GATC | 5 cut(s) | 87, 577, 757, 933, 1135 |
| BstMAI | GTCTC | 1 cut(s) | 301 |
| BstMBI | GATC | 5 cut(s) | 84, 574, 754, 930, 1132 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 102, 260, 773, 843, 983 |
| BstNI | CCWGG | 2 cut(s) | 1021, 1102 |
| BstNSI | RCATGY | 2 cut(s) | 1178, 1182 |
| BstSCI | CCNGG | 3 cut(s) | 458, 1019, 1100 |
| BstSFI | CTRYAG | 1 cut(s) | 1245 |
| BstUI | CGCG | 1 cut(s) | 986 |
| BstV1I | GCAGC | 2 cut(s) | 266, 866 |
| BstX2I | RGATCY | 1 cut(s) | 930 |
| BstYI | RGATCY | 1 cut(s) | 930 |
| BstZ17I | GTATAC | 1 cut(s) | 829 |
| BsuI | GTATCC | 1 cut(s) | 1399 |
| BsuRI | GGCC | 5 cut(s) | 274, 327, 542, 846, 1160 |
| BtgI | CCRYGG | 1 cut(s) | 1419 |
| BtsCI | GGATG | 2 cut(s) | 495, 859 |
| Cac8I | GCNNGC | 2 cut(s) | 984, 1176 |
| CfoI | GCGC | 1 cut(s) | 988 |
| Cfr10I | RCCGGY | 2 cut(s) | 407, 1014 |
| Cfr13I | GGNCC | 5 cut(s) | 48, 1017, 1023, 1104, 1159 |
| CseI | GACGC | 1 cut(s) | 422 |
| Csp6I | GTAC | 7 cut(s) | 138, 182, 418, 730, 742, 1120, 1230 |
| CspAI | ACCGGT | 1 cut(s) | 1014 |
| CviAII | CATG | 9 cut(s) | 45, 329, 922, 935, 1038, 1175, 1179, 1420, 1445 |
| CviQI | GTAC | 7 cut(s) | 138, 182, 418, 730, 742, 1120, 1230 |
| DdeI | CTNAG | 3 cut(s) | 259, 394, 777 |
| DpnI | GATC | 5 cut(s) | 86, 576, 756, 932, 1134 |
| DpnII | GATC | 5 cut(s) | 84, 574, 754, 930, 1132 |
| DraIII | CACNNNGTG | 1 cut(s) | 1321 |
| EaeI | YGGCCR | 1 cut(s) | 540 |
| Ecl136II | GAGCTC | 1 cut(s) | 955 |
| Eco130I | CCWWGG | 1 cut(s) | 1419 |
| Eco24I | GRGCYC | 2 cut(s) | 957, 984 |
| Eco31I | GGTCTC | 1 cut(s) | 301 |
| Eco47I | GGWCC | 4 cut(s) | 48, 1017, 1023, 1104 |
| Eco53kI | GAGCTC | 1 cut(s) | 955 |
| Eco57I | CTGAAG | 1 cut(s) | 746 |
| Eco88I | CYCGRG | 2 cut(s) | 950, 1080 |
| EcoICRI | GAGCTC | 1 cut(s) | 955 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1104 |
| EcoRII | CCWGG | 2 cut(s) | 1019, 1100 |
| EcoT14I | CCWWGG | 1 cut(s) | 1419 |
| EcoT22I | ATGCAT | 1 cut(s) | 1180 |
| EcoT38I | GRGCYC | 2 cut(s) | 957, 984 |
| ErhI | CCWWGG | 1 cut(s) | 1419 |
| FaeI | CATG | 9 cut(s) | 48, 332, 925, 938, 1041, 1178, 1182, 1423, 1448 |
| FaqI | GGGAC | 2 cut(s) | 533, 1370 |
| FatI | CATG | 9 cut(s) | 44, 328, 921, 934, 1037, 1174, 1178, 1419, 1444 |
| FauI | CCCGC | 1 cut(s) | 1353 |
| FbaI | TGATCA | 2 cut(s) | 574, 1132 |
| FblI | GTMKAC | 1 cut(s) | 828 |
| Fnu4HI | GCNGC | 4 cut(s) | 255, 439, 855, 1097 |
| FokI | GGATG | 2 cut(s) | 502, 846 |
| FriOI | GRGCYC | 2 cut(s) | 957, 984 |
| Fsp4HI | GCNGC | 4 cut(s) | 255, 439, 855, 1097 |
| FspBI | CTAG | 6 cut(s) | 338, 686, 698, 851, 875, 893 |
| GlaI | GCGC | 1 cut(s) | 987 |
| GluI | GCNGC | 4 cut(s) | 255, 439, 855, 1097 |
| GsaI | CCCAGC | 2 cut(s) | 26, 488 |
| HaeIII | GGCC | 5 cut(s) | 274, 327, 542, 846, 1160 |
| HapII | CCGG | 3 cut(s) | 408, 460, 1015 |
| HgaI | GACGC | 1 cut(s) | 422 |
| HhaI | GCGC | 1 cut(s) | 988 |
| Hin1II | CATG | 9 cut(s) | 48, 332, 925, 938, 1041, 1178, 1182, 1423, 1448 |
| Hin6I | GCGC | 1 cut(s) | 986 |
| HinP1I | GCGC | 1 cut(s) | 986 |
| HinfI | GANTC | 6 cut(s) | 359, 453, 547, 613, 971, 1312 |
| HpaII | CCGG | 3 cut(s) | 408, 460, 1015 |
| HphI | GGTGA | 2 cut(s) | 410, 806 |
| Hpy166II | GTNNAC | 2 cut(s) | 420, 829 |
| Hpy188I | TCNGA | 8 cut(s) | 114, 472, 599, 610, 726, 751, 1311, 1342 |
| Hpy188III | TCNNGA | 4 cut(s) | 82, 1082, 1184, 1392 |
| Hpy8I | GTNNAC | 2 cut(s) | 420, 829 |
| Hpy99I | CGWCG | 3 cut(s) | 438, 527, 610 |
| HpyAV | CCTTC | 1 cut(s) | 1117 |
| HpyCH4III | ACNGT | 4 cut(s) | 532, 1027, 1191, 1379 |
| HpyCH4IV | ACGT | 1 cut(s) | 605 |
| HpyCH4V | TGCA | 6 cut(s) | 254, 565, 709, 1178, 1284, 1383 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 102, 260, 773, 843, 983 |
| HpyF3I | CTNAG | 3 cut(s) | 259, 394, 777 |
| HpySE526I | ACGT | 1 cut(s) | 605 |
| Hsp92II | CATG | 9 cut(s) | 48, 332, 925, 938, 1041, 1178, 1182, 1423, 1448 |
| HspAI | GCGC | 1 cut(s) | 986 |
| KpnI | GGTACC | 1 cut(s) | 733 |
| Ksp22I | TGATCA | 2 cut(s) | 574, 1132 |
| Kzo9I | GATC | 5 cut(s) | 84, 574, 754, 930, 1132 |
| LmnI | GCTCC | 2 cut(s) | 752, 834 |
| Lsp1109I | GCAGC | 2 cut(s) | 266, 866 |
| MaeI | CTAG | 6 cut(s) | 338, 686, 698, 851, 875, 893 |
| MaeII | ACGT | 1 cut(s) | 605 |
| MaeIII | GTNAC | 4 cut(s) | 398, 614, 677, 879 |
| MalI | GATC | 5 cut(s) | 86, 576, 756, 932, 1134 |
| MbiI | CCGCTC | 1 cut(s) | 441 |
| MboI | GATC | 5 cut(s) | 84, 574, 754, 930, 1132 |
| MboII | GAAGA | 5 cut(s) | 904, 1247, 1417, 1420, 1460 |
| MfeI | CAATTG | 1 cut(s) | 1285 |
| MflI | RGATCY | 1 cut(s) | 930 |
| MhlI | GDGCHC | 3 cut(s) | 957, 984, 1326 |
| MluCI | AATT | 2 cut(s) | 152, 1285 |
| MlyI | GAGTC | 2 cut(s) | 622, 965 |
| MmeI | TCCRAC | 3 cut(s) | 588, 967, 1365 |
| Mph1103I | ATGCAT | 1 cut(s) | 1180 |
| MseI | TTAA | 2 cut(s) | 65, 1332 |
| MslI | CAYNNNNRTG | 3 cut(s) | 133, 894, 1449 |
| MspA1I | CMGCKG | 1 cut(s) | 26 |
| MspI | CCGG | 3 cut(s) | 408, 460, 1015 |
| MspR9I | CCNGG | 3 cut(s) | 460, 1021, 1102 |
| MunI | CAATTG | 1 cut(s) | 1285 |
| Mva1269I | GAATGC | 3 cut(s) | 1278, 1286, 1445 |
| MvaI | CCWGG | 2 cut(s) | 1021, 1102 |
| MvnI | CGCG | 1 cut(s) | 986 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 102, 260, 773, 843, 983 |
| NciI | CCSGG | 1 cut(s) | 460 |
| NcoI | CCATGG | 1 cut(s) | 1419 |
| NdeII | GATC | 5 cut(s) | 84, 574, 754, 930, 1132 |
| NlaIII | CATG | 9 cut(s) | 48, 332, 925, 938, 1041, 1178, 1182, 1423, 1448 |
| NlaIV | GGNNCC | 5 cut(s) | 731, 748, 932, 1161, 1417 |
| NmeAIII | GCCGAG | 5 cut(s) | 422, 568, 953, 1055, 1392 |
| NmuCI | GTSAC | 3 cut(s) | 398, 614, 879 |
| NsiI | ATGCAT | 1 cut(s) | 1180 |
| NspI | RCATGY | 2 cut(s) | 1178, 1182 |
| PaeI | GCATGC | 1 cut(s) | 1178 |
| PaeR7I | CTCGAG | 2 cut(s) | 950, 1080 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 528 |
| PctI | GAATGC | 3 cut(s) | 1278, 1286, 1445 |
| PfeI | GAWTC | 4 cut(s) | 359, 453, 547, 1312 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 270 |
| PfoI | TCCNGGA | 2 cut(s) | 458, 1019 |
| PinAI | ACCGGT | 1 cut(s) | 1014 |
| PkrI | GCNGC | 4 cut(s) | 256, 440, 856, 1098 |
| PleI | GAGTC | 2 cut(s) | 621, 965 |
| PpsI | GAGTC | 2 cut(s) | 621, 965 |
| PpuMI | RGGWCCY | 1 cut(s) | 1104 |
| Psp124BI | GAGCTC | 1 cut(s) | 957 |
| Psp5II | RGGWCCY | 1 cut(s) | 1104 |
| Psp6I | CCWGG | 2 cut(s) | 1019, 1100 |
| PspFI | CCCAGC | 2 cut(s) | 22, 484 |
| PspGI | CCWGG | 2 cut(s) | 1019, 1100 |
| PspN4I | GGNNCC | 5 cut(s) | 731, 748, 932, 1161, 1417 |
| PspPI | GGNCC | 5 cut(s) | 48, 1017, 1023, 1104, 1159 |
| PspPPI | RGGWCCY | 1 cut(s) | 1104 |
| PspXI | VCTCGAGB | 1 cut(s) | 950 |
| PsuI | RGATCY | 1 cut(s) | 930 |
| PvuII | CAGCTG | 1 cut(s) | 26 |
| RsaI | GTAC | 7 cut(s) | 139, 183, 419, 731, 743, 1121, 1231 |
| RsaNI | GTAC | 7 cut(s) | 138, 182, 418, 730, 742, 1120, 1230 |
| RseI | CAYNNNNRTG | 3 cut(s) | 133, 894, 1449 |
| SacI | GAGCTC | 1 cut(s) | 957 |
| SaqAI | TTAA | 2 cut(s) | 65, 1332 |
| SatI | GCNGC | 4 cut(s) | 255, 439, 855, 1097 |
| Sau3AI | GATC | 5 cut(s) | 84, 574, 754, 930, 1132 |
| Sau96I | GGNCC | 5 cut(s) | 48, 1017, 1023, 1104, 1159 |
| SchI | GAGTC | 2 cut(s) | 622, 965 |
| ScrFI | CCNGG | 3 cut(s) | 460, 1021, 1102 |
| SduI | GDGCHC | 3 cut(s) | 957, 984, 1326 |
| SfcI | CTRYAG | 1 cut(s) | 1245 |
| Sfr274I | CTCGAG | 2 cut(s) | 950, 1080 |
| SinI | GGWCC | 4 cut(s) | 48, 1017, 1023, 1104 |
| SlaI | CTCGAG | 2 cut(s) | 950, 1080 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 133, 894, 1449 |
| SmlI | CTYRAG | 2 cut(s) | 950, 1080 |
| SmoI | CTYRAG | 2 cut(s) | 950, 1080 |
| SphI | GCATGC | 1 cut(s) | 1178 |
| Sse9I | AATT | 2 cut(s) | 152, 1285 |
| SsiI | CCGC | 4 cut(s) | 380, 439, 1097, 1346 |
| SspI | AATATT | 1 cut(s) | 1059 |
| SspMI | CTAG | 6 cut(s) | 338, 686, 698, 851, 875, 893 |
| SstI | GAGCTC | 1 cut(s) | 957 |
| StyD4I | CCNGG | 3 cut(s) | 458, 1019, 1100 |
| StyI | CCWWGG | 1 cut(s) | 1419 |
| TaaI | ACNGT | 4 cut(s) | 532, 1027, 1191, 1379 |
| TaiI | ACGT | 1 cut(s) | 608 |
| TaqI | TCGA | 8 cut(s) | 757, 951, 969, 1063, 1081, 1089, 1258, 1461 |
| TasI | AATT | 2 cut(s) | 152, 1285 |
| TatI | WGTACW | 2 cut(s) | 417, 1229 |
| TauI | GCSGC | 2 cut(s) | 441, 1099 |
| TfiI | GAWTC | 4 cut(s) | 359, 453, 547, 1312 |
| Tru1I | TTAA | 2 cut(s) | 65, 1332 |
| Tru9I | TTAA | 2 cut(s) | 65, 1332 |
| TseFI | GTSAC | 3 cut(s) | 398, 614, 879 |
| TseI | GCWGC | 2 cut(s) | 254, 854 |
| Tsp45I | GTSAC | 3 cut(s) | 398, 614, 879 |
| TspDTI | ATGAA | 4 cut(s) | 17, 1026, 1461, 1467 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 270 |
| VpaK11BI | GGWCC | 4 cut(s) | 48, 1017, 1023, 1104 |
| XceI | RCATGY | 2 cut(s) | 1178, 1182 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 242, 1284 |
| XhoI | CTCGAG | 2 cut(s) | 950, 1080 |
| XmiI | GTMKAC | 1 cut(s) | 828 |
| XspI | CTAG | 6 cut(s) | 338, 686, 698, 851, 875, 893 |
| Zsp2I | ATGCAT | 1 cut(s) | 1180 |