Rh1BG235200

Fringe-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011701
Physical Location & Seq
Reverse (-)
35842788 .. 35845914
3127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG235200.1

Sequence Viewer

Length: 1383 bp
ATGAAAGACAACCCAAAAGACCCAGAAAACCTCTACTCAACATGGACCTTCCCGAAGGTAACAATATGCTTCCTCCTCTTGATCTCTTTCAGCTACATCTCTTACTCTATGAAATTTCTCCACCCATATTTATGTACCCAACAATCTCAATCTCTTAATTTCCAATCCCATTTTTCCATACCCCAATCAGCTGATCCAAACCCACCAACGTCCCAAGAACACAAAACAAACATCTCCCACATCGTTTTTGGCATTGCAGCCTCAGCCGATCTCTGGCATCACAGAAAGAACTACATCAAGCTGTGGTGGAGACCAGACCAAATGAGAGGCCATGTTTGGCTAGACCAACCAGTAAAAACAGACCCCAAATCCAATCACACCCTTTTACCGCCGTTCAAAATCTCAGGCGACACTTCCGGCTTCAACTATACAAACCCAAAAGGCCACCACTCGGCTATAAGAATCTCCCGGATTGTTTCCGAGAGTTTCAGGCTGGGGATGAAGAATGTGAGGTGGTTTGTGCTGGGGGACGACGACACCGTTTTCGTGGCTGAGAATCTGGTCAGGGTTTTGCAGAAGTATGATCATAACCAGTTTTACTATATCGGAGGATCGTCGGAGAGTCACTTGCAGAACATAAAGTTTTCGTATAATATGGCTTATGGTGGAGGTGGGATTGCTATAAGTTACTCTTTAGCAAAAGCCCTTGAGAAAATGCAGGACAGTTGTATTCAGAGGTATCCTGGTTTGTACGGCTCCGATGATCGGCTTCAGGCTTGTATGGCTGAGATTGGTGTCCCTCTCACCAGAGAAAAAGGGTTTCATCAGTTTGATGTATATGGGAGCTTGTTCGGCCTCCTAGCAGCTCATCCAATCGCACCCCTAGTGTCACTACACCACCTAGATGTGGTTGAACCCATATTCCCCAATATGGATCGGATCCATGCCTTACAACGGCTCGAGGCTCCAACGATGCTCGACTCAGCGGGGCTTGCGCAACAATCCATTTGCTACGATATCAATCGGTCCTGGACCATATCTGTTTCCTGGGGCTACGCAGTTCAAATATTTCAGGGTATTTCCTCGGCTCGAGAAATGGAACTGCCACTCAGGACCTTCCTCAATTGGTACAAGAGAGCTGATCATACTGCCTACACATTCAATACGGCCTCGGTCAATAGGCACGCATGTCAAGTACCGTTTGTTTATTACTTATCTAATGCTTTCTACAATAGAACTACAAATCAAACGACCACCGAGTATGTTCAACATCAAACACGGATGCCAGAATGCAATTGGAAGATGGCAAATCCCTCCCGGATTCACCAAGTGCACGTCCATAAATCCTCCGACCCGCATTTATGGGACAAGGTACTAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF604 Malectin_like

Protein Analysis

460

Amino Acids

52.91

Weight (kDa)

8.65

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fringe PF02434 152 - 276 8.7e-16 Fringe-like
DUF604 PF04646 211 - 457 6.3e-109 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011701)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01570 AT1G01570
fragaria_vesca FvH4_7g14990 FvH4_7g14990
prunus_persica Prupe.2G174500_v2.0.a1
pyrus_communis pycom01g09760
rosa_chinensis RchiOBHm_Chr1g0357031
rosa_laevigata RLG00000028059
rosa_multiflora Rmu_sc0000166.1_g000039 Rmu_sc0013980.1_g000025 Rmu_sc0035147.1_g000001
rosa_roxburghii Rroxscaffold_4G00299110
rosa_rugosa Rorug01G0253600 Rorug01G0253700
rosa_samantha Rh1AG267400 Rh1BG235200 Rh1CG251400 Rh1DG262600
rosa_wichuraiana Rw1G023610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 996
AciI CCGC 3 cut(s) 389, 986, 1355
AclWI GGATC 5 cut(s) 188, 619, 934, 942, 947
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 755
AdeI CACNNNGTG 1 cut(s) 1330
AfaI GTAC 5 cut(s) 136, 752, 1130, 1197, 1374
AfiI CCNNNNNNNGG 6 cut(s) 273, 451, 765, 907, 931, 954
AgsI TTSAA 6 cut(s) 397, 424, 914, 1064, 1162, 1268
AjiI CACGTC 1 cut(s) 1336
AjnI CCWGG 3 cut(s) 742, 1028, 1046
AloI GAACNNNNNNTCC 2 cut(s) 906, 938
AluBI AGCT 6 cut(s) 93, 191, 301, 846, 866, 1139
AluI AGCT 6 cut(s) 93, 191, 301, 846, 866, 1139
Alw21I GWGCWC 1 cut(s) 1335
Alw26I GTCTC 1 cut(s) 304
Alw44I GTGCAC 1 cut(s) 1331
AlwI GGATC 5 cut(s) 188, 619, 934, 942, 947
Ama87I CYCGRG 2 cut(s) 959, 1089
AoxI GGCC 4 cut(s) 328, 442, 853, 1167
ApaLI GTGCAC 1 cut(s) 1331
ApeKI GCWGC 2 cut(s) 257, 863
ApoI RAATTY 1 cut(s) 113
ArsI GACNNNNNNTTYG 2 cut(s) 527, 559
AspLEI GCGC 1 cut(s) 997
AspS9I GGNCC 4 cut(s) 45, 1026, 1032, 1113
AsuC2I CCSGG 2 cut(s) 469, 1318
AsuHPI GGTGA 2 cut(s) 796, 1316
AvaI CYCGRG 2 cut(s) 959, 1089
AvaII GGWCC 4 cut(s) 45, 1026, 1032, 1113
BaeGI GKGCMC 1 cut(s) 1335
BaeI ACNNNNGTAYC 1 cut(s) 1364
BamHI GGATCC 1 cut(s) 939
Bbv12I GWGCWC 1 cut(s) 1335
BbvCI CCTCAGC 1 cut(s) 262
BbvI GCAGC 2 cut(s) 269, 875
BccI CCATC 1 cut(s) 1297
BceAI ACGGC 4 cut(s) 376, 769, 971, 1182
BciT130I CCWGG 3 cut(s) 744, 1030, 1048
BciVI GTATCC 1 cut(s) 750
BclI TGATCA 2 cut(s) 583, 1141
BcnI CCSGG 2 cut(s) 469, 1318
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 4 cut(s) 341, 860, 884, 902
BfuI GTATCC 1 cut(s) 750
BisI GCNGC 2 cut(s) 258, 864
BlsI GCNGC 2 cut(s) 259, 865
Bme1390I CCNGG 5 cut(s) 469, 744, 1030, 1048, 1318
Bme18I GGWCC 4 cut(s) 45, 1026, 1032, 1113
BmeT110I CYCGRG 2 cut(s) 959, 1089
BmgBI CACGTC 1 cut(s) 1336
BmgT120I GGNCC 4 cut(s) 45, 1026, 1032, 1113
BmiI GGNNCC 3 cut(s) 757, 941, 966
BmrFI CCNGG 5 cut(s) 469, 744, 1030, 1048, 1318
BmsI GCATC 3 cut(s) 286, 963, 1272
Bpu10I CCTNAGC 1 cut(s) 262
BpuEI CTTGAG 1 cut(s) 728
BpuMI CCSGG 2 cut(s) 469, 1318
BsaBI GATNNNNATC 1 cut(s) 1020
BsaI GGTCTC 1 cut(s) 304
BsaJI CCNNGG 3 cut(s) 1047, 1083, 1170
Bsc4I CCNNNNNNNGG 6 cut(s) 273, 451, 765, 907, 931, 954
Bse1I ACTGG 2 cut(s) 350, 592
Bse3DI GCAATG 1 cut(s) 252
Bse8I GATNNNNATC 1 cut(s) 1020
BseBI CCWGG 3 cut(s) 744, 1030, 1048
BseDI CCNNGG 3 cut(s) 1047, 1083, 1170
BseGI GGATG 3 cut(s) 504, 868, 1287
BseJI GATNNNNATC 1 cut(s) 1020
BseLI CCNNNNNNNGG 6 cut(s) 273, 451, 765, 907, 931, 954
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 6 cut(s) 276, 417, 543, 777, 996, 1123
BseNI ACTGG 2 cut(s) 350, 592
BseRI GAGGAG 1 cut(s) 65
BseSI GKGCMC 1 cut(s) 1335
BseXI GCAGC 2 cut(s) 269, 875
BseYI CCCAGC 2 cut(s) 493, 523
BshFI GGCC 4 cut(s) 330, 444, 855, 1169
BsiHKAI GWGCWC 1 cut(s) 1335
BsiHKCI CYCGRG 2 cut(s) 959, 1089
BsiSI CCGG 3 cut(s) 417, 469, 1318
BslFI GGGAC 4 cut(s) 196, 542, 782, 1379
BslI CCNNNNNNNGG 6 cut(s) 273, 451, 765, 907, 931, 954
BsmAI GTCTC 1 cut(s) 304
BsmFI GGGAC 4 cut(s) 196, 542, 782, 1379
BsmI GAATGC 1 cut(s) 1295
BsnI GGCC 4 cut(s) 330, 444, 855, 1169
Bso31I GGTCTC 1 cut(s) 304
BsoBI CYCGRG 2 cut(s) 959, 1089
Bsp1286I GDGCHC 1 cut(s) 1335
Bsp143I GATC 9 cut(s) 81, 193, 268, 583, 611, 763, 934, 939, 1141
BspACI CCGC 3 cut(s) 389, 986, 1355
BspANI GGCC 4 cut(s) 330, 444, 855, 1169
BspCNI CTCAG 6 cut(s) 275, 416, 544, 778, 995, 1122
BspLI GGNNCC 3 cut(s) 757, 941, 966
BspPI GGATC 5 cut(s) 188, 619, 934, 942, 947
BspTNI GGTCTC 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 252
BsrI ACTGG 2 cut(s) 350, 592
BssECI CCNNGG 3 cut(s) 1047, 1083, 1170
BssMI GATC 9 cut(s) 81, 193, 268, 583, 611, 763, 934, 939, 1141
Bst2UI CCWGG 3 cut(s) 744, 1030, 1048
Bst4CI ACNGT 3 cut(s) 541, 725, 1200
BstC8I GCNNGC 2 cut(s) 993, 1185
BstDEI CTNAG 6 cut(s) 262, 403, 552, 786, 982, 1109
BstF5I GGATG 3 cut(s) 504, 868, 1287
BstHHI GCGC 1 cut(s) 997
BstKTI GATC 9 cut(s) 84, 196, 271, 586, 614, 766, 937, 942, 1144
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 9 cut(s) 81, 193, 268, 583, 611, 763, 934, 939, 1141
BstMWI GCNNNNNNNGC 4 cut(s) 263, 782, 852, 992
BstNI CCWGG 3 cut(s) 744, 1030, 1048
BstNSI RCATGY 1 cut(s) 1191
BstSCI CCNGG 5 cut(s) 467, 742, 1028, 1046, 1316
BstSLI GKGCMC 1 cut(s) 1335
BstV1I GCAGC 2 cut(s) 269, 875
BstX2I RGATCY 1 cut(s) 939
BstYI RGATCY 1 cut(s) 939
BsuI GTATCC 1 cut(s) 750
BsuRI GGCC 4 cut(s) 330, 444, 855, 1169
BtrI CACGTC 1 cut(s) 1336
BtsCI GGATG 3 cut(s) 504, 868, 1287
Cac8I GCNNGC 2 cut(s) 993, 1185
CfoI GCGC 1 cut(s) 997
Cfr13I GGNCC 4 cut(s) 45, 1026, 1032, 1113
Csp6I GTAC 5 cut(s) 135, 751, 1129, 1196, 1373
CviAII CATG 4 cut(s) 42, 332, 944, 1188
CviQI GTAC 5 cut(s) 135, 751, 1129, 1196, 1373
DdeI CTNAG 6 cut(s) 262, 403, 552, 786, 982, 1109
DpnI GATC 9 cut(s) 83, 195, 270, 585, 613, 765, 936, 941, 1143
DpnII GATC 9 cut(s) 81, 193, 268, 583, 611, 763, 934, 939, 1141
DraIII CACNNNGTG 1 cut(s) 1330
Eco31I GGTCTC 1 cut(s) 304
Eco32I GATATC 1 cut(s) 1018
Eco47I GGWCC 4 cut(s) 45, 1026, 1032, 1113
Eco57I CTGAAG 1 cut(s) 755
Eco88I CYCGRG 2 cut(s) 959, 1089
EcoO109I RGGNCCY 1 cut(s) 1113
EcoRII CCWGG 3 cut(s) 742, 1028, 1046
EcoRV GATATC 1 cut(s) 1018
FaeI CATG 4 cut(s) 45, 335, 947, 1191
FalI AAGNNNNNCTT 2 cut(s) 676, 708
FaqI GGGAC 4 cut(s) 196, 542, 782, 1379
FatI CATG 4 cut(s) 41, 331, 943, 1187
FauI CCCGC 2 cut(s) 979, 1362
FbaI TGATCA 2 cut(s) 583, 1141
Fnu4HI GCNGC 2 cut(s) 258, 864
FokI GGATG 3 cut(s) 511, 855, 1294
Fsp4HI GCNGC 2 cut(s) 258, 864
FspBI CTAG 4 cut(s) 341, 860, 884, 902
FspI TGCGCA 1 cut(s) 996
GlaI GCGC 1 cut(s) 996
GluI GCNGC 2 cut(s) 258, 864
GsaI CCCAGC 2 cut(s) 497, 527
HaeIII GGCC 4 cut(s) 330, 444, 855, 1169
HapII CCGG 3 cut(s) 417, 469, 1318
HhaI GCGC 1 cut(s) 997
Hin1II CATG 4 cut(s) 45, 335, 947, 1191
Hin6I GCGC 1 cut(s) 995
HinP1I GCGC 1 cut(s) 995
HinfI GANTC 5 cut(s) 462, 556, 622, 980, 1321
HpaII CCGG 3 cut(s) 417, 469, 1318
HphI GGTGA 2 cut(s) 796, 1316
Hpy166II GTNNAC 1 cut(s) 1333
Hpy188I TCNGA 7 cut(s) 481, 608, 619, 735, 760, 939, 1351
Hpy188III TCNNGA 4 cut(s) 52, 79, 1091, 1111
Hpy8I GTNNAC 1 cut(s) 1333
Hpy99I CGWCG 2 cut(s) 536, 619
HpyAV CCTTC 3 cut(s) 49, 58, 1126
HpyCH4III ACNGT 3 cut(s) 541, 725, 1200
HpyCH4IV ACGT 2 cut(s) 209, 1335
HpyCH4V TGCA 6 cut(s) 257, 574, 631, 718, 1293, 1333
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 782, 852, 992
HpyF3I CTNAG 6 cut(s) 262, 403, 552, 786, 982, 1109
HpySE526I ACGT 2 cut(s) 209, 1335
Hsp92II CATG 4 cut(s) 45, 335, 947, 1191
HspAI GCGC 1 cut(s) 995
Ksp22I TGATCA 2 cut(s) 583, 1141
Kzo9I GATC 9 cut(s) 81, 193, 268, 583, 611, 763, 934, 939, 1141
LmnI GCTCC 3 cut(s) 761, 843, 970
Lsp1109I GCAGC 2 cut(s) 269, 875
LweI GCATC 3 cut(s) 286, 963, 1272
MaeI CTAG 4 cut(s) 341, 860, 884, 902
MaeII ACGT 2 cut(s) 209, 1335
MaeIII GTNAC 4 cut(s) 58, 623, 686, 888
MalI GATC 9 cut(s) 83, 195, 270, 585, 613, 765, 936, 941, 1143
MboI GATC 9 cut(s) 81, 193, 268, 583, 611, 763, 934, 939, 1141
MboII GAAGA 2 cut(s) 514, 1312
MfeI CAATTG 2 cut(s) 1123, 1294
MflI RGATCY 1 cut(s) 939
MhlI GDGCHC 1 cut(s) 1335
MluCI AATT 4 cut(s) 113, 157, 1123, 1294
MlyI GAGTC 2 cut(s) 631, 974
MmeI TCCRAC 3 cut(s) 597, 992, 1374
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 2 cut(s) 130, 903
MspA1I CMGCKG 2 cut(s) 191, 986
MspI CCGG 3 cut(s) 417, 469, 1318
MspR9I CCNGG 5 cut(s) 469, 744, 1030, 1048, 1318
MunI CAATTG 2 cut(s) 1123, 1294
Mva1269I GAATGC 1 cut(s) 1295
MvaI CCWGG 3 cut(s) 744, 1030, 1048
MwoI GCNNNNNNNGC 4 cut(s) 263, 782, 852, 992
NciI CCSGG 2 cut(s) 469, 1318
NdeII GATC 9 cut(s) 81, 193, 268, 583, 611, 763, 934, 939, 1141
NlaIII CATG 4 cut(s) 45, 335, 947, 1191
NlaIV GGNNCC 3 cut(s) 757, 941, 966
NmeAIII GCCGAG 2 cut(s) 431, 1064
NmuCI GTSAC 2 cut(s) 623, 888
NsbI TGCGCA 1 cut(s) 996
NspI RCATGY 1 cut(s) 1191
PaeR7I CTCGAG 2 cut(s) 959, 1089
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PctI GAATGC 1 cut(s) 1295
PfeI GAWTC 3 cut(s) 462, 556, 1321
PfoI TCCNGGA 3 cut(s) 467, 1028, 1316
PkrI GCNGC 2 cut(s) 259, 865
PleI GAGTC 2 cut(s) 630, 974
PpsI GAGTC 2 cut(s) 630, 974
PpuMI RGGWCCY 1 cut(s) 1113
Psp5II RGGWCCY 1 cut(s) 1113
Psp6I CCWGG 3 cut(s) 742, 1028, 1046
PspFI CCCAGC 2 cut(s) 493, 523
PspGI CCWGG 3 cut(s) 742, 1028, 1046
PspN4I GGNNCC 3 cut(s) 757, 941, 966
PspPI GGNCC 4 cut(s) 45, 1026, 1032, 1113
PspPPI RGGWCCY 1 cut(s) 1113
PspXI VCTCGAGB 1 cut(s) 959
PsuI RGATCY 1 cut(s) 939
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 5 cut(s) 136, 752, 1130, 1197, 1374
RsaNI GTAC 5 cut(s) 135, 751, 1129, 1196, 1373
RseI CAYNNNNRTG 2 cut(s) 130, 903
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 2 cut(s) 258, 864
Sau3AI GATC 9 cut(s) 81, 193, 268, 583, 611, 763, 934, 939, 1141
Sau96I GGNCC 4 cut(s) 45, 1026, 1032, 1113
SchI GAGTC 2 cut(s) 631, 974
ScrFI CCNGG 5 cut(s) 469, 744, 1030, 1048, 1318
SduI GDGCHC 1 cut(s) 1335
SfaNI GCATC 3 cut(s) 286, 963, 1272
Sfr274I CTCGAG 2 cut(s) 959, 1089
SinI GGWCC 4 cut(s) 45, 1026, 1032, 1113
SlaI CTCGAG 2 cut(s) 959, 1089
SmiMI CAYNNNNRTG 2 cut(s) 130, 903
SmlI CTYRAG 3 cut(s) 707, 959, 1089
SmoI CTYRAG 3 cut(s) 707, 959, 1089
Sse9I AATT 4 cut(s) 113, 157, 1123, 1294
SsiI CCGC 3 cut(s) 389, 986, 1355
SspI AATATT 1 cut(s) 1068
SspMI CTAG 4 cut(s) 341, 860, 884, 902
StyD4I CCNGG 5 cut(s) 467, 742, 1028, 1046, 1316
TaaI ACNGT 3 cut(s) 541, 725, 1200
TaiI ACGT 2 cut(s) 212, 1338
TaqI TCGA 3 cut(s) 960, 978, 1090
TaqII GACCGA 2 cut(s) 1014, 1162
TasI AATT 4 cut(s) 113, 157, 1123, 1294
TfiI GAWTC 3 cut(s) 462, 556, 1321
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseFI GTSAC 2 cut(s) 623, 888
TseI GCWGC 2 cut(s) 257, 863
Tsp45I GTSAC 2 cut(s) 623, 888
TspDTI ATGAA 4 cut(s) 17, 125, 515, 812
TspGWI ACGGA 1 cut(s) 1294
VneI GTGCAC 1 cut(s) 1331
VpaK11BI GGWCC 4 cut(s) 45, 1026, 1032, 1113
XapI RAATTY 1 cut(s) 113
XceI RCATGY 1 cut(s) 1191
XcmI CCANNNNNNNNNTGG 2 cut(s) 245, 1293
XhoI CTCGAG 2 cut(s) 959, 1089
XspI CTAG 4 cut(s) 341, 860, 884, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.