AT1G01970

repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010020
Physical Location & Seq
Forward (+)
338241 .. 340088
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01970.1

Sequence Viewer

Length: 1230 bp
ATGGGAATTTATAGCTGCAGCGCAGTGTTGAGCTTCGGCTTGAAATGTCCATTAGTTATTGCAAGGCATAGGCTTTACCATCGCATGTTTAGACGAAACCCATTACTTGTAGAATCCCATCTTAATAGGCTCTGTAGTTGCAAATGTAATGCGAGTCTGGCCATTGGCGAAGTTGTGGAGAAGGAAGATGCAGAGCAAAGCCGTAGTTTTAATTGGGCTGATGTTGGTCTGAATCTGACAGAAGAACAAGACGAGGCAATCACTCGGATTCCTATTAAGATGTCAAAACGTTGTCAAGCGCTTATGCGGCAAATTATTTGCTTCTCCCCCGAAAAGGGAAGCTTTTGCGATTTGTTGGGTGCTTGGCTTAGGAGGATGAACCCCATTAGAGCTGACTGGCTTTCTATTCTTAAAGAGTTGAAGAATCTTGACTCTCCGTTTTATATCAAGGTGGCTGAATTTTCGCTGCTCCAAGATTCCTTTGAAGCGAATGCCCGTGATTATACCAAGATCATCCATTATTATGGGAAGCTAAACCAAGTAGAAGACGCTGAAAGAACTCTTCTTTCCATGAAAAATCGAGGCTTTCTTATTGATCAGGTGACCCTTACTGCAATGGTTCAGTTGTACAGCAAGGCAGGCTGTCATAAATTGGCTGAAGAAACTTTCAACGAGATCAAATTGCTTGGGGAACCACTAGACTACCGATCCTATGGTTCAATGATTATGGCCTACATCAGAGCTGGTGTCCCCGAGAAAGGAGAGTCTCTACTTAGAGAAATGGACTCCCAAGAGATATGTGCGGGAAGAGAGGTTTACAAGGCATTGTTGAGAGATTACTCTATGGGCGGAGACGCGGAAGGAGCTAAGCGGGTTTTTGATGCAGTTCAAATTGCAGGTATTACTCCTGATGTAAAGCTATGTGGACTGCTCATAAACGCATACAGTGTCTCGGGTCAGAGCCAGAATGCTCGTTTGGCGTTTGAGAATATGAGAAAAGCGGGAATCAAAGCTACTGATAAGTGTGTGGCTCTTGTATTGGCTGCATATGAGAAGGAAGAAAAGCTAAATGAAGCGTTAGGATTCTTGGTAGAGCTTGAGAAAGACTCTATAATGTTAGGGAAAGAAGCTTCTGCTGTGTTGGCTCAGTGGTTTAAGAAGCTTGGTGTTGTTGAAGAAGTTGAATTACTTCTTAGGGAGTTTTCATCTAGCCAGTCTCAACCCCTCTAA

Protein Analysis

409

Amino Acids

46.08

Weight (kDa)

6.58

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 168 - 207 1.9e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 887
AccII CGCG 1 cut(s) 857
AciI CCGC 6 cut(s) 307, 803, 849, 857, 871, 1001
AclI AACGTT 1 cut(s) 289
AclWI GGATC 1 cut(s) 702
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 2 cut(s) 6, 458
AcuI CTGAAG 1 cut(s) 678
AfaI GTAC 1 cut(s) 629
AfeI AGCGCT 1 cut(s) 300
AfiI CCNNNNNNNGG 3 cut(s) 334, 335, 758
AgsI TTSAA 8 cut(s) 43, 421, 485, 670, 720, 890, 1175, 1184
AjuI GAANNNNNNNTTGG 2 cut(s) 959, 991
Alw26I GTCTC 4 cut(s) 771, 846, 955, 1221
AlwI GGATC 1 cut(s) 702
Ama87I CYCGRG 2 cut(s) 752, 952
Aor51HI AGCGCT 1 cut(s) 300
AoxI GGCC 2 cut(s) 159, 729
ApeKI GCWGC 4 cut(s) 15, 18, 466, 1043
ApoI RAATTY 2 cut(s) 6, 458
Asp700I GAANNNNTTC 1 cut(s) 1188
AspLEI GCGC 2 cut(s) 23, 301
AsuHPI GGTGA 1 cut(s) 613
AvaI CYCGRG 2 cut(s) 752, 952
BalI TGGCCA 1 cut(s) 161
BarI GAAGNNNNNNTAC 2 cut(s) 1170, 1202
BbsI GAAGAC 1 cut(s) 552
BbvI GCAGC 4 cut(s) 2, 30, 453, 1030
BccI CCATC 2 cut(s) 87, 126
BceAI ACGGC 1 cut(s) 186
BclI TGATCA 1 cut(s) 595
BcoDI GTCTC 4 cut(s) 771, 846, 955, 1221
BfaI CTAG 2 cut(s) 698, 1209
BfmI CTRYAG 2 cut(s) 16, 133
BfoI RGCGCY 1 cut(s) 302
BfuAI ACCTGC 1 cut(s) 887
BisI GCNGC 5 cut(s) 16, 19, 308, 467, 1044
BlpI GCTNAGC 1 cut(s) 867
BlsI GCNGC 5 cut(s) 17, 20, 309, 468, 1045
BmeT110I CYCGRG 2 cut(s) 752, 952
BmiI GGNNCC 1 cut(s) 693
BmsI GCATC 2 cut(s) 178, 871
BpiI GAAGAC 1 cut(s) 552
BplI GAGNNNNNCTC 2 cut(s) 1091, 1123
Bpu10I CCTNAGC 1 cut(s) 368
Bpu1102I GCTNAGC 1 cut(s) 867
BpuEI CTTGAG 1 cut(s) 1118
Bsc4I CCNNNNNNNGG 3 cut(s) 334, 335, 758
Bse1I ACTGG 2 cut(s) 401, 1213
Bse3DI GCAATG 1 cut(s) 621
BseGI GGATG 2 cut(s) 381, 513
BseLI CCNNNNNNNGG 3 cut(s) 334, 335, 758
BseMI GCAATG 1 cut(s) 621
BseMII CTCAG 1 cut(s) 1160
BseNI ACTGG 2 cut(s) 401, 1213
BseXI GCAGC 4 cut(s) 2, 30, 453, 1030
Bsh1236I CGCG 1 cut(s) 857
BshFI GGCC 2 cut(s) 161, 731
BsiHKCI CYCGRG 2 cut(s) 752, 952
BslFI GGGAC 1 cut(s) 734
BslI CCNNNNNNNGG 3 cut(s) 334, 335, 758
BsmAI GTCTC 4 cut(s) 771, 846, 955, 1221
BsmBI CGTCTC 1 cut(s) 846
BsmFI GGGAC 1 cut(s) 734
BsmI GAATGC 2 cut(s) 496, 973
BsnI GGCC 2 cut(s) 161, 731
BsoBI CYCGRG 2 cut(s) 752, 952
Bsp1407I TGTACA 1 cut(s) 627
Bsp143I GATC 4 cut(s) 510, 595, 675, 707
Bsp1720I GCTNAGC 1 cut(s) 867
BspACI CCGC 6 cut(s) 307, 803, 849, 857, 871, 1001
BspANI GGCC 2 cut(s) 161, 731
BspCNI CTCAG 1 cut(s) 1159
BspFNI CGCG 1 cut(s) 857
BspLI GGNNCC 1 cut(s) 693
BspMAI CTGCAG 1 cut(s) 20
BspMI ACCTGC 1 cut(s) 887
BspPI GGATC 1 cut(s) 702
BsrDI GCAATG 1 cut(s) 621
BsrGI TGTACA 1 cut(s) 627
BsrI ACTGG 2 cut(s) 401, 1213
BssMI GATC 4 cut(s) 510, 595, 675, 707
Bst4CI ACNGT 1 cut(s) 947
Bst6I CTCTTC 2 cut(s) 567, 802
BstAUI TGTACA 1 cut(s) 627
BstC8I GCNNGC 1 cut(s) 640
BstDEI CTNAG 5 cut(s) 368, 773, 867, 1146, 1193
BstEII GGTNACC 1 cut(s) 601
BstF5I GGATG 2 cut(s) 381, 513
BstFNI CGCG 1 cut(s) 857
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 2 cut(s) 23, 301
BstKTI GATC 4 cut(s) 513, 598, 678, 710
BstMAI GTCTC 4 cut(s) 771, 846, 955, 1221
BstMBI GATC 4 cut(s) 510, 595, 675, 707
BstMWI GCNNNNNNNGC 6 cut(s) 158, 307, 639, 863, 977, 1142
BstNSI RCATGY 1 cut(s) 88
BstPI GGTNACC 1 cut(s) 601
BstSFI CTRYAG 2 cut(s) 16, 133
BstUI CGCG 1 cut(s) 857
BstV1I GCAGC 4 cut(s) 2, 30, 453, 1030
BstV2I GAAGAC 1 cut(s) 552
BstXI CCANNNNNNTGG 1 cut(s) 524
BsuRI GGCC 2 cut(s) 161, 731
BtgZI GCGATG 1 cut(s) 65
BtsCI GGATG 2 cut(s) 381, 513
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 3 cut(s) 30, 952, 1154
BveI ACCTGC 1 cut(s) 887
Cac8I GCNNGC 1 cut(s) 640
CfoI GCGC 2 cut(s) 23, 301
CseI GACGC 2 cut(s) 557, 863
Csp6I GTAC 1 cut(s) 628
CviAII CATG 2 cut(s) 85, 571
CviQI GTAC 1 cut(s) 628
DdeI CTNAG 5 cut(s) 368, 773, 867, 1146, 1193
DpnI GATC 4 cut(s) 512, 597, 677, 709
DpnII GATC 4 cut(s) 510, 595, 675, 707
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 2 cut(s) 567, 802
EarI CTCTTC 2 cut(s) 567, 802
EciI GGCGGA 1 cut(s) 864
Eco47III AGCGCT 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 678
Eco88I CYCGRG 2 cut(s) 752, 952
Eco91I GGTNACC 1 cut(s) 601
EcoO65I GGTNACC 1 cut(s) 601
Esp3I CGTCTC 1 cut(s) 846
FaeI CATG 2 cut(s) 88, 574
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 1 cut(s) 734
FatI CATG 2 cut(s) 84, 570
FauI CCCGC 3 cut(s) 796, 864, 994
FauNDI CATATG 1 cut(s) 1048
FbaI TGATCA 1 cut(s) 595
Fnu4HI GCNGC 5 cut(s) 16, 19, 308, 467, 1044
FokI GGATG 2 cut(s) 388, 500
Fsp4HI GCNGC 5 cut(s) 16, 19, 308, 467, 1044
FspBI CTAG 2 cut(s) 698, 1209
GlaI GCGC 2 cut(s) 22, 300
GluI GCNGC 5 cut(s) 16, 19, 308, 467, 1044
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 2 cut(s) 161, 731
HgaI GACGC 2 cut(s) 557, 863
HhaI GCGC 2 cut(s) 23, 301
Hin1II CATG 2 cut(s) 88, 574
Hin6I GCGC 2 cut(s) 21, 299
HinP1I GCGC 2 cut(s) 21, 299
HindIII AAGCTT 3 cut(s) 340, 1128, 1160
HphI GGTGA 1 cut(s) 613
Hpy166II GTNNAC 2 cut(s) 817, 926
Hpy188I TCNGA 5 cut(s) 231, 237, 267, 740, 960
Hpy188III TCNNGA 2 cut(s) 428, 908
Hpy8I GTNNAC 2 cut(s) 817, 926
HpyAV CCTTC 3 cut(s) 175, 854, 1048
HpyCH4III ACNGT 1 cut(s) 947
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 8 cut(s) 18, 62, 141, 191, 614, 884, 896, 1046
HpyF10VI GCNNNNNNNGC 6 cut(s) 158, 307, 639, 863, 977, 1142
HpyF3I CTNAG 5 cut(s) 368, 773, 867, 1146, 1193
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 2 cut(s) 88, 574
HspAI GCGC 2 cut(s) 21, 299
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 4 cut(s) 510, 595, 675, 707
LmnI GCTCC 2 cut(s) 474, 863
LpnPI CCDG 9 cut(s) 143, 382, 584, 624, 729, 882, 921, 977, 1226
Lsp1109I GCAGC 4 cut(s) 2, 30, 453, 1030
LweI GCATC 2 cut(s) 178, 871
MaeI CTAG 2 cut(s) 698, 1209
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 601
MalI GATC 4 cut(s) 512, 597, 677, 709
MboI GATC 4 cut(s) 510, 595, 675, 707
MboII GAAGA 9 cut(s) 197, 254, 433, 554, 557, 671, 819, 1070, 1187
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 8 cut(s) 6, 211, 312, 458, 650, 680, 891, 1184
MluNI TGGCCA 1 cut(s) 161
MlyI GAGTC 5 cut(s) 163, 425, 773, 779, 1100
MnlI CCTC 4 cut(s) 247, 366, 575, 805
Mox20I TGGCCA 1 cut(s) 161
MroXI GAANNNNTTC 1 cut(s) 1188
MscI TGGCCA 1 cut(s) 161
MseI TTAA 5 cut(s) 123, 210, 276, 411, 1155
MslI CAYNNNNRTG 1 cut(s) 522
Msp20I TGGCCA 1 cut(s) 161
Mva1269I GAATGC 2 cut(s) 496, 973
MvnI CGCG 1 cut(s) 857
MwoI GCNNNNNNNGC 6 cut(s) 158, 307, 639, 863, 977, 1142
NdeI CATATG 1 cut(s) 1048
NdeII GATC 4 cut(s) 510, 595, 675, 707
NlaIII CATG 2 cut(s) 88, 574
NlaIV GGNNCC 1 cut(s) 693
NmuCI GTSAC 1 cut(s) 601
NspI RCATGY 1 cut(s) 88
PctI GAATGC 2 cut(s) 496, 973
PdmI GAANNNNTTC 1 cut(s) 1188
PfeI GAWTC 7 cut(s) 113, 232, 268, 424, 476, 1005, 1083
PkrI GCNGC 5 cut(s) 17, 20, 309, 468, 1045
PleI GAGTC 5 cut(s) 162, 425, 772, 779, 1100
PpsI GAGTC 5 cut(s) 162, 425, 772, 779, 1100
Psp1406I AACGTT 1 cut(s) 289
PspEI GGTNACC 1 cut(s) 601
PspN4I GGNNCC 1 cut(s) 693
PstI CTGCAG 1 cut(s) 20
RsaI GTAC 1 cut(s) 629
RsaNI GTAC 1 cut(s) 628
RseI CAYNNNNRTG 1 cut(s) 522
SaqAI TTAA 5 cut(s) 123, 210, 276, 411, 1155
SatI GCNGC 5 cut(s) 16, 19, 308, 467, 1044
Sau3AI GATC 4 cut(s) 510, 595, 675, 707
SchI GAGTC 5 cut(s) 163, 425, 773, 779, 1100
SfaNI GCATC 2 cut(s) 178, 871
SfcI CTRYAG 2 cut(s) 16, 133
SmiMI CAYNNNNRTG 1 cut(s) 522
SmlI CTYRAG 1 cut(s) 1097
SmoI CTYRAG 1 cut(s) 1097
Sse9I AATT 8 cut(s) 6, 211, 312, 458, 650, 680, 891, 1184
SsiI CCGC 6 cut(s) 307, 803, 849, 857, 871, 1001
SspMI CTAG 2 cut(s) 698, 1209
TaaI ACNGT 1 cut(s) 947
TaiI ACGT 1 cut(s) 292
TaqI TCGA 1 cut(s) 580
TasI AATT 8 cut(s) 6, 211, 312, 458, 650, 680, 891, 1184
TatI WGTACW 1 cut(s) 627
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 7 cut(s) 113, 232, 268, 424, 476, 1005, 1083
Tru1I TTAA 5 cut(s) 123, 210, 276, 411, 1155
Tru9I TTAA 5 cut(s) 123, 210, 276, 411, 1155
TscAI CASTG 3 cut(s) 30, 952, 1154
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 4 cut(s) 15, 18, 466, 1043
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 4 cut(s) 392, 587, 1086, 1194
TspGWI ACGGA 1 cut(s) 426
TspRI CASTG 3 cut(s) 30, 952, 1154
XapI RAATTY 2 cut(s) 6, 458
XceI RCATGY 1 cut(s) 88
XmnI GAANNNNTTC 1 cut(s) 1188
XspI CTAG 2 cut(s) 698, 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.