Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010020

Physical Location & Seq

Genomic Coordinates Reverse (-)

10919682 .. 10923806

Gene Structure 4125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g12010.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGCCACCTCTGTCTCCAATGCGGTTTGCTTTCTCTATCCCCACCCAACAATCAATGAACCCCCAAAAACCCACCACCCCAAATTCTCCGTCACCACTTTCCGGCCAACACCCATCAATCTTTCCTCCTCCGGTCACCGTTTTCACCCCCCACTAATGGCTTTAAGTATTGAAGAGACAGCAATGGCTGAAAACACAGAAGGGAAGCCAAGGTTTAAGTGGGGTGAGATAGGTTCGGATATTACAGAAGCACAGCAGGACGCTATAGATGAACTCCCTCCCAAGATGAGCAAGCGTTGCCAGGCTATAATGAAGCAGATTATTTGCTTTGCTCCTGAGAAAGGGAGTCTTTGTGAGGTGTTGAATGCTTGGGTTAGCATTATGAAGCCTTCCAGAGCTGACTGGCTTGCTGTTCTTAAAGAATTGAGGATTAAAGATCACCCTCTTTATCTTCAGGTGGCAGAAATTGCTGTACTGGATGATTCTTTTGAACCCAATGTGCGTGACTATACTAAAATAATCCATGGTTATGGGAAGCGAAACCGAATTGAGGATGCTGAAAGCACCCTTTTAAACATGAAGTCTAGAGGCTTCGTATGTGATCAGGTAACTCTAACTGCCATGATTGACATGTATAGCAAGGCTGGACATCTTAAGCTGGCTGAAGATACTTTTGAAGACATCAAACTCCTTGGACAGCAAGTAGATAAAAGAGCTTATGGCTCAATGATCATGGCCTATATCAGAGCTGGAATGCCTGAGCAGGGAGAAACTGTACTCATAGAAATGGATGCCCAAGAAATTGTTGCTGGAAGTGAAGTTTACAAGGCATTGTTAAGAGCATACTCCATGGTTGGTGATACTGAAGGAGCTCAGAGGGTGTTCAATGCGCTTCAGCTAGCTGGTATCTCTCCAGATGCTAAGATATGTGGACTTCTCATAAATGCATATGGTATATCAGGTCAAAGTCAAAAGGCACGTGCTGCATTTGAAAATATGAGGAAGGCTGGTCTTAAACCCAGTGATAAATGTATAGCTCTAATGTTGGCTGCTTACGAGAAGGAGAATAAGCTGCAAATGGCATTGAAATTTCTTATGGGGTTGGAGAGAGAAGGTATAATGGTCGGGAAAGAAGTTGCAGAAACATTGGCTGGATGGTTTAAAAAATTAGGAGTTGTGGAAGAGGTGGATATGGTCTTGAGAGAATTTGCAGCAACAAAAGCCAATTCTGGAATTCCCACTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

416

Amino Acids

45.97

Weight (kDa)

6.29

Isoelectric Point (pI)

34.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	165 - 211	6.6e-09	PPR repeat family
PPR_2	PF13041	201 - 247	4.5e-06	PPR repeat family
PPR_long	PF17177	257 - 388	3.3e-06	Pentacotripeptide-repeat region of PRORP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01970
fragaria_vesca	FvH4_7g12010 FvH4_7g12010 FvH4_7g12010 FvH4_7g12010
malus_domestica	MD08G1028000.v1.1
prunus_persica	Prupe.2G146700_v2.0.a1 Prupe.2G146700_v2.0.a1 Prupe.2G146700_v2.0.a1
pyrus_communis	pycom08g02230
rosa_chinensis	RchiOBHm_Chr1g0350721
rosa_laevigata	RLG00000028460
rosa_multiflora	Rmu_sc0002150.1_g000007
rosa_roxburghii	Rroxscaffold_4G00304570
rosa_rugosa	Rorug01G0213400 Rorug01G0213500
rosa_samantha	Rh1AG227700 Rh1BG197200 Rh1CG212600 Rh1DG225100
rosa_wichuraiana	Rw1G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	23
AcoI	YGGCCR	2 cut(s)	3, 104
AcsI	RAATTY	4 cut(s)	83, 1088, 1205, 1233
AcuI	CTGAAG	4 cut(s)	437, 684, 878, 885
AcvI	CACGTG	1 cut(s)	980
AfaI	GTAC	2 cut(s)	474, 777
AfiI	CCNNNNNNNGG	5 cut(s)	102, 157, 341, 550, 764
AflII	CTTAAG	1 cut(s)	653
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	7 cut(s)	173, 364, 491, 677, 886, 992, 1087
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	9 cut(s)	398, 658, 716, 749, 872, 898, 902, 1037, 1072
AluI	AGCT	9 cut(s)	398, 658, 716, 749, 872, 898, 902, 1037, 1072
Alw21I	GWGCWC	1 cut(s)	874
Alw26I	GTCTC	2 cut(s)	19, 170
AoxI	GGCC	3 cut(s)	3, 104, 735
ApeKI	GCWGC	4 cut(s)	983, 1049, 1072, 1211
ApoI	RAATTY	4 cut(s)	83, 1088, 1205, 1233
ArsI	GACNNNNNNTTYG	2 cut(s)	75, 107
AspLEI	GCGC	1 cut(s)	892
AsuHPI	GGTGA	6 cut(s)	85, 128, 137, 236, 431, 869
AsuNHI	GCTAGC	1 cut(s)	898
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	874
BbrPI	CACGTG	1 cut(s)	980
BbsI	GAAGAC	1 cut(s)	684
Bbv12I	GWGCWC	1 cut(s)	874
BbvI	GCAGC	4 cut(s)	970, 1036, 1059, 1223
BccI	CCATC	2 cut(s)	122, 1149
BciT130I	CCWGG	1 cut(s)	302
BclI	TGATCA	2 cut(s)	601, 729
BcoDI	GTCTC	2 cut(s)	19, 170
BfaI	CTAG	2 cut(s)	585, 899
BfmI	CTRYAG	1 cut(s)	264
BfrI	CTTAAG	1 cut(s)	653
BisI	GCNGC	4 cut(s)	984, 1050, 1073, 1212
BlsI	GCNGC	4 cut(s)	985, 1051, 1074, 1213
Bme1390I	CCNGG	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	302
BmrI	ACTGGG	1 cut(s)	1014
BmsI	GCATC	3 cut(s)	544, 781, 907
BmtI	GCTAGC	1 cut(s)	902
BmuI	ACTGGG	1 cut(s)	1014
BpiI	GAAGAC	1 cut(s)	684
BpmI	CTGGAG	1 cut(s)	897
Bpu10I	CCTNAGC	1 cut(s)	759
BpuEI	CTTGAG	1 cut(s)	1219
BsaAI	YACGTR	1 cut(s)	980
BsaJI	CCNNGG	4 cut(s)	209, 523, 691, 849
BsaWI	WCCGGW	1 cut(s)	131
BsaXI	ACNNNNNCTCC	4 cut(s)	337, 367, 759, 789
Bsc4I	CCNNNNNNNGG	5 cut(s)	102, 157, 341, 550, 764
Bse1I	ACTGG	3 cut(s)	407, 480, 1020
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	4 cut(s)	209, 523, 691, 849
BseGI	GGATG	4 cut(s)	484, 559, 796, 1160
BseLI	CCNNNNNNNGG	5 cut(s)	102, 157, 341, 550, 764
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	3 cut(s)	327, 750, 887
BseNI	ACTGG	3 cut(s)	407, 480, 1020
BseRI	GAGGAG	1 cut(s)	118
BseXI	GCAGC	4 cut(s)	970, 1036, 1059, 1223
BshFI	GGCC	3 cut(s)	5, 106, 737
BsiHKAI	GWGCWC	1 cut(s)	874
BsiSI	CCGG	2 cut(s)	103, 132
BslI	CCNNNNNNNGG	5 cut(s)	102, 157, 341, 550, 764
BsmAI	GTCTC	2 cut(s)	19, 170
BsmI	GAATGC	2 cut(s)	370, 759
BsnI	GGCC	3 cut(s)	5, 106, 737
Bsp1286I	GDGCHC	1 cut(s)	874
Bsp143I	GATC	3 cut(s)	436, 601, 729
Bsp19I	CCATGG	2 cut(s)	523, 849
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	3 cut(s)	5, 106, 737
BspCNI	CTCAG	3 cut(s)	328, 751, 886
BspOI	GCTAGC	1 cut(s)	902
BspTI	CTTAAG	1 cut(s)	653
BsrDI	GCAATG	1 cut(s)	189
BsrI	ACTGG	3 cut(s)	407, 480, 1020
BssECI	CCNNGG	4 cut(s)	209, 523, 691, 849
BssMI	GATC	3 cut(s)	436, 601, 729
BssT1I	CCWWGG	4 cut(s)	209, 523, 691, 849
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	2 cut(s)	140, 775
Bst6I	CTCTTC	2 cut(s)	168, 1176
BstAFI	CTTAAG	1 cut(s)	653
BstAPI	GCANNNNNTGC	3 cut(s)	297, 467, 983
BstBAI	YACGTR	1 cut(s)	980
BstC8I	GCNNGC	4 cut(s)	293, 408, 660, 900
BstDEI	CTNAG	4 cut(s)	336, 759, 873, 921
BstDSI	CCRYGG	2 cut(s)	523, 849
BstEII	GGTNACC	1 cut(s)	134
BstENI	CCTNNNNNAGG	1 cut(s)	339
BstF5I	GGATG	4 cut(s)	484, 559, 796, 1160
BstHHI	GCGC	1 cut(s)	892
BstKTI	GATC	3 cut(s)	439, 604, 732
BstMAI	GTCTC	2 cut(s)	19, 170
BstMBI	GATC	3 cut(s)	436, 601, 729
BstMWI	GCNNNNNNNGC	4 cut(s)	297, 467, 983, 1220
BstNI	CCWGG	1 cut(s)	302
BstNSI	RCATGY	1 cut(s)	634
BstPI	GGTNACC	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	300
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	4 cut(s)	970, 1036, 1059, 1223
BstV2I	GAAGAC	1 cut(s)	684
BstXI	CCANNNNNNTGG	1 cut(s)	530
BsuRI	GGCC	3 cut(s)	5, 106, 737
BtgI	CCRYGG	2 cut(s)	523, 849
BtsCI	GGATG	4 cut(s)	484, 559, 796, 1160
BtsIMutI	CAGTG	1 cut(s)	1027
Cac8I	GCNNGC	4 cut(s)	293, 408, 660, 900
CfoI	GCGC	1 cut(s)	892
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	2 cut(s)	473, 776
CviAII	CATG	6 cut(s)	524, 577, 622, 631, 733, 850
CviQI	GTAC	2 cut(s)	473, 776
DdeI	CTNAG	4 cut(s)	336, 759, 873, 921
DpnI	GATC	3 cut(s)	438, 603, 731
DpnII	GATC	3 cut(s)	436, 601, 729
DraI	TTTAAA	2 cut(s)	573, 1162
EaeI	YGGCCR	2 cut(s)	3, 104
Eam1104I	CTCTTC	2 cut(s)	168, 1176
EarI	CTCTTC	2 cut(s)	168, 1176
Ecl136II	GAGCTC	1 cut(s)	872
Eco130I	CCWWGG	4 cut(s)	209, 523, 691, 849
Eco24I	GRGCYC	1 cut(s)	874
Eco53kI	GAGCTC	1 cut(s)	872
Eco57I	CTGAAG	4 cut(s)	437, 684, 878, 885
Eco72I	CACGTG	1 cut(s)	980
Eco91I	GGTNACC	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	872
EcoNI	CCTNNNNNAGG	1 cut(s)	339
EcoO65I	GGTNACC	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	1233
EcoRII	CCWGG	1 cut(s)	300
EcoT14I	CCWWGG	4 cut(s)	209, 523, 691, 849
EcoT22I	ATGCAT	1 cut(s)	949
EcoT38I	GRGCYC	1 cut(s)	874
ErhI	CCWWGG	4 cut(s)	209, 523, 691, 849
FaeI	CATG	6 cut(s)	527, 580, 625, 634, 736, 853
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FatI	CATG	6 cut(s)	523, 576, 621, 630, 732, 849
FauNDI	CATATG	1 cut(s)	949
FbaI	TGATCA	2 cut(s)	601, 729
Fnu4HI	GCNGC	4 cut(s)	984, 1050, 1073, 1212
FokI	GGATG	4 cut(s)	491, 566, 803, 1167
FriOI	GRGCYC	1 cut(s)	874
Fsp4HI	GCNGC	4 cut(s)	984, 1050, 1073, 1212
FspBI	CTAG	2 cut(s)	585, 899
GlaI	GCGC	1 cut(s)	891
GluI	GCNGC	4 cut(s)	984, 1050, 1073, 1212
GsuI	CTGGAG	1 cut(s)	897
HaeIII	GGCC	3 cut(s)	5, 106, 737
HapII	CCGG	2 cut(s)	103, 132
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	1 cut(s)	892
Hin1II	CATG	6 cut(s)	527, 580, 625, 634, 736, 853
Hin6I	GCGC	1 cut(s)	890
HinP1I	GCGC	1 cut(s)	890
HinfI	GANTC	2 cut(s)	346, 482
HpaII	CCGG	2 cut(s)	103, 132
HphI	GGTGA	6 cut(s)	85, 128, 137, 236, 431, 869
Hpy166II	GTNNAC	2 cut(s)	823, 932
Hpy188I	TCNGA	3 cut(s)	238, 746, 876
Hpy188III	TCNNGA	7 cut(s)	335, 393, 585, 914, 1126, 1198, 1230
Hpy8I	GTNNAC	2 cut(s)	823, 932
HpyAV	CCTTC	6 cut(s)	194, 399, 860, 997, 1054, 1106
HpyCH4III	ACNGT	2 cut(s)	140, 775
HpyCH4IV	ACGT	1 cut(s)	979
HpyCH4V	TGCA	5 cut(s)	947, 986, 1075, 1139, 1211
HpyF10VI	GCNNNNNNNGC	4 cut(s)	297, 467, 983, 1220
HpyF3I	CTNAG	4 cut(s)	336, 759, 873, 921
HpySE526I	ACGT	1 cut(s)	979
Hsp92II	CATG	6 cut(s)	527, 580, 625, 634, 736, 853
HspAI	GCGC	1 cut(s)	890
Ksp22I	TGATCA	2 cut(s)	601, 729
Kzo9I	GATC	3 cut(s)	436, 601, 729
LmnI	GCTCC	2 cut(s)	337, 869
Lsp1109I	GCAGC	4 cut(s)	970, 1036, 1059, 1223
LweI	GCATC	3 cut(s)	544, 781, 907
MaeI	CTAG	2 cut(s)	585, 899
MaeII	ACGT	1 cut(s)	979
MaeIII	GTNAC	4 cut(s)	91, 134, 503, 607
MalI	GATC	3 cut(s)	438, 603, 731
MboI	GATC	3 cut(s)	436, 601, 729
MboII	GAAGA	5 cut(s)	185, 443, 677, 689, 1193
MhlI	GDGCHC	1 cut(s)	874
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	355
MmeI	TCCRAC	1 cut(s)	1083
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	949
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	9 cut(s)	164, 216, 417, 432, 572, 654, 836, 1014, 1161
MslI	CAYNNNNRTG	2 cut(s)	528, 785
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	653
MspI	CCGG	2 cut(s)	103, 132
MspR9I	CCNGG	1 cut(s)	302
Mva1269I	GAATGC	2 cut(s)	370, 759
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	4 cut(s)	297, 467, 983, 1220
NcoI	CCATGG	2 cut(s)	523, 849
NdeI	CATATG	1 cut(s)	949
NdeII	GATC	3 cut(s)	436, 601, 729
NheI	GCTAGC	1 cut(s)	898
NlaIII	CATG	6 cut(s)	527, 580, 625, 634, 736, 853
NmuCI	GTSAC	3 cut(s)	91, 134, 503
NsiI	ATGCAT	1 cut(s)	949
NspI	RCATGY	1 cut(s)	634
PciI	ACATGT	1 cut(s)	630
PctI	GAATGC	2 cut(s)	370, 759
PfeI	GAWTC	1 cut(s)	482
PkrI	GCNGC	4 cut(s)	985, 1051, 1074, 1213
PleI	GAGTC	1 cut(s)	354
PmaCI	CACGTG	1 cut(s)	980
PmlI	CACGTG	1 cut(s)	980
PpsI	GAGTC	1 cut(s)	354
Ppu21I	YACGTR	1 cut(s)	980
PscI	ACATGT	1 cut(s)	630
Psp124BI	GAGCTC	1 cut(s)	874
Psp6I	CCWGG	1 cut(s)	300
PspCI	CACGTG	1 cut(s)	980
PspEI	GGTNACC	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	300
RsaI	GTAC	2 cut(s)	474, 777
RsaNI	GTAC	2 cut(s)	473, 776
RseI	CAYNNNNRTG	2 cut(s)	528, 785
SacI	GAGCTC	1 cut(s)	874
SaqAI	TTAA	9 cut(s)	164, 216, 417, 432, 572, 654, 836, 1014, 1161
SatI	GCNGC	4 cut(s)	984, 1050, 1073, 1212
Sau3AI	GATC	3 cut(s)	436, 601, 729
SchI	GAGTC	1 cut(s)	355
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	1 cut(s)	874
SfaNI	GCATC	3 cut(s)	544, 781, 907
SfcI	CTRYAG	1 cut(s)	264
SmiMI	CAYNNNNRTG	2 cut(s)	528, 785
SmlI	CTYRAG	2 cut(s)	653, 1198
SmoI	CTYRAG	2 cut(s)	653, 1198
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	2 cut(s)	585, 899
SstI	GAGCTC	1 cut(s)	874
StyD4I	CCNGG	1 cut(s)	300
StyI	CCWWGG	4 cut(s)	209, 523, 691, 849
TaaI	ACNGT	2 cut(s)	140, 775
TaiI	ACGT	1 cut(s)	982
TatI	WGTACW	2 cut(s)	472, 775
TfiI	GAWTC	1 cut(s)	482
Tru1I	TTAA	9 cut(s)	164, 216, 417, 432, 572, 654, 836, 1014, 1161
Tru9I	TTAA	9 cut(s)	164, 216, 417, 432, 572, 654, 836, 1014, 1161
TscAI	CASTG	1 cut(s)	1027
TseFI	GTSAC	3 cut(s)	91, 134, 503
TseI	GCWGC	4 cut(s)	983, 1049, 1072, 1211
Tsp45I	GTSAC	3 cut(s)	91, 134, 503
TspDTI	ATGAA	6 cut(s)	72, 285, 326, 398, 593, 1233
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	1 cut(s)	1027
Vha464I	CTTAAG	1 cut(s)	653
XagI	CCTNNNNNAGG	1 cut(s)	339
XapI	RAATTY	4 cut(s)	83, 1088, 1205, 1233
XbaI	TCTAGA	1 cut(s)	584
XceI	RCATGY	1 cut(s)	634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	216
XspI	CTAG	2 cut(s)	585, 899
Zsp2I	ATGCAT	1 cut(s)	949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.