Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010020

Physical Location & Seq

Genomic Coordinates Reverse (-)

30398293 .. 30398658

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0213400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCTGACAAAGCTGGAGGCTTTACGAAAGTTGGTTTTACAATTAAAGATTTGTACAATAAGTTGGACACAAGTCGTCAAGAGACTCTACATGAAGGGGATGCAAAAGTTGCATTTTCGTATTTGGAAGGAAAAGCAGCCACAGACAAGAAGTTATTTTGCAAGTATATATGGTGTACAAATGAGAATAACAGAGATGTGTTGGTATTTGATAGCACATGCAAAACCAATCACTATGAGAAGCCTTTGTATTATTTGCTGGTTCAAACCATCATTTATCGACTACAATTTTTGGTTTTGCATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

102

Amino Acids

11.91

Weight (kDa)

8.39

Isoelectric Point (pI)

23.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01970
fragaria_vesca	FvH4_7g12010 FvH4_7g12010 FvH4_7g12010 FvH4_7g12010
malus_domestica	MD08G1028000.v1.1
prunus_persica	Prupe.2G146700_v2.0.a1 Prupe.2G146700_v2.0.a1 Prupe.2G146700_v2.0.a1
pyrus_communis	pycom08g02230
rosa_chinensis	RchiOBHm_Chr1g0350721
rosa_laevigata	RLG00000028460
rosa_multiflora	Rmu_sc0002150.1_g000007
rosa_roxburghii	Rroxscaffold_4G00304570
rosa_rugosa	Rorug01G0213400 Rorug01G0213500
rosa_samantha	Rh1AG227700 Rh1BG197200 Rh1CG212600 Rh1DG225100
rosa_wichuraiana	Rw1G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	56, 178
AgsI	TTSAA	1 cut(s)	266
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	307
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
BmsI	GCATC	1 cut(s)	91
BoxI	GACNNNNGTC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	77
Bsp1407I	TGTACA	2 cut(s)	54, 176
BsrGI	TGTACA	2 cut(s)	54, 176
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstAUI	TGTACA	2 cut(s)	54, 176
BstF5I	GGATG	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	77
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 110
BstNSI	RCATGY	1 cut(s)	222
BstPAI	GACNNNNGTC	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	106
Csp6I	GTAC	2 cut(s)	55, 177
CviAII	CATG	2 cut(s)	92, 219
CviJI	RGCY	5 cut(s)	5, 14, 21, 140, 244
CviKI_1	RGCY	5 cut(s)	5, 14, 21, 140, 244
CviQI	GTAC	2 cut(s)	55, 177
FaeI	CATG	2 cut(s)	95, 222
FaiI	YATR	6 cut(s)	93, 168, 170, 172, 220, 237
FatI	CATG	2 cut(s)	91, 218
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	307
GluI	GCNGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	36
Hin1II	CATG	2 cut(s)	95, 222
HinfI	GANTC	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	1 cut(s)	177
HpyAV	CCTTC	2 cut(s)	89, 122
HpyCH4V	TGCA	5 cut(s)	104, 113, 162, 222, 301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 110
Hsp92II	CATG	2 cut(s)	95, 222
LpnPI	CCDG	1 cut(s)	245
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	307
MluCI	AATT	2 cut(s)	42, 287
MlyI	GAGTC	1 cut(s)	79
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	1 cut(s)	11
MseI	TTAA	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	11, 110
NlaIII	CATG	2 cut(s)	95, 222
NspI	RCATGY	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	139
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PshAI	GACNNNNGTC	1 cut(s)	72
RsaI	GTAC	2 cut(s)	56, 178
RsaNI	GTAC	2 cut(s)	55, 177
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	1 cut(s)	138
SchI	GAGTC	1 cut(s)	79
SetI	ASST	1 cut(s)	16
SfaNI	GCATC	1 cut(s)	91
SgeI	CNNG	8 cut(s)	27, 84, 92, 104, 160, 175, 231, 272
Sse9I	AATT	2 cut(s)	42, 287
SspMI	CTAG	1 cut(s)	307
TaqI	TCGA	1 cut(s)	280
TasI	AATT	2 cut(s)	42, 287
TatI	WGTACW	2 cut(s)	54, 176
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	1 cut(s)	108
XceI	RCATGY	1 cut(s)	222
XspI	CTAG	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.