Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0010020

Physical Location & Seq

Genomic Coordinates Forward (+)

1669882 .. 1672114

Gene Structure 2233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g02230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGCAGCTGGTCAAGTTTTCTTCACGGGGGCCCATGCTTCCAACGTTTTCTGCTATCCCTATCCCCACCCAGCAAACCCAATGACCAATGAATCGAAAAAAACCCATTGCCACAGATTCACGGGCAACTCTTTGTGGGTAATCCCAATGAGCCTTGTCACCCACAACCGCCCTTTCCAGCGGCCATTGGCGGCGGCAAGCGTGGAGGAGACGGCGAAGACTGAGAGCAATGAAGGGAAGTCGCGGATTAGGCTGGATGTGGTGAGTCCGGAGATTACAGAAGCTCAGAAAGAAGCTATTGAACAACTGCCACAAAATATGAGCAAGCGGTGTAGGGCTTTGATGAGGCAGCTCATTTGCTTCTCTCCTGAAAAGGGTAGTTTGTGCGAGTTGTTGGCTGATTGGGGTAGGATTATGAAGCCTTGCAGAGCTGACTGGCTTGCTGTTCTTAAAGAATTGAGGGTAAAGGATCACCCCATTTATCTTCAGGTGGCAGAAATTGCTTTACTAGAAGAATCTTTTGAAGCCAACATTCGTGACTATACCAAAATAATTCATGGTTATGGGAAACAAAACCGAGTTGAGGATGCTGTAAAAACCCTTTCGAACATGAAGGCTAGAGGCTTCATGTGTGATCAGGTAACTCTAACTGCCATGATTGACATGTATAGCAAGGCTGGAAATCTTAAGCTAGCTGAAGAAACTTTTGAAGAACTTAGGCTCCTTGGACAGCCGTTGGATAAAAGATCGTATGGCTCAATGATTATGGCGTACATTAGAGCTGGAATGCCTGATCAGGGAGAGAGTTTGCTCACAGAAATGGATGTTCGAGAGGTTTATGCTGGAAGTGAAGTTTACAAGGCATTGTTAAGAGCATACTCAATGGTTGGTGATACTGAAGGAGCTCAAAGGGTGTTCAATGCAGTTCAGCTAGCTGGTATTTCTCCAGACGCTAAGCTATGCGGACTTCTCATAAATGCATATGGTGTATCGGGTGAAAGTCAAAAGGCGCGTGTTGCGTTCGAAAACATGAGGACGGCTGGTCTTAAGCCAACTGATAAATGTATAGCTCTAGTGTTGGCTGCTTACGAAAAGGAGAATAAGCTTCAAAAGGCATTAAAATTTCTGATAGCGTTGGAGAGAGATGGTATCATGGTTGGGAAAGAAACCGCTGAAACACTGGCTGGATGGTTTAGGAAACTAGGGGTTGTGGAAGAGGTGGATATGGTCTTGAGAGAATTTGCAGCAACAGAAGAGAAATCTAGCATTCTGGCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

427

Amino Acids

47.51

Weight (kDa)

7.04

Isoelectric Point (pI)

36.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	181 - 225	2.1e-10	PPR repeat family
PPR_long	PF17177	190 - 299	2.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	212 - 257	9e-06	PPR repeat family
PPR_long	PF17177	270 - 399	3.3e-07	Pentacotripeptide-repeat region of PRORP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01970
fragaria_vesca	FvH4_7g12010 FvH4_7g12010 FvH4_7g12010 FvH4_7g12010
malus_domestica	MD08G1028000.v1.1
prunus_persica	Prupe.2G146700_v2.0.a1 Prupe.2G146700_v2.0.a1 Prupe.2G146700_v2.0.a1
pyrus_communis	pycom08g02230
rosa_chinensis	RchiOBHm_Chr1g0350721
rosa_laevigata	RLG00000028460
rosa_multiflora	Rmu_sc0002150.1_g000007
rosa_roxburghii	Rroxscaffold_4G00304570
rosa_rugosa	Rorug01G0213400 Rorug01G0213500
rosa_samantha	Rh1AG227700 Rh1BG197200 Rh1CG212600 Rh1DG225100
rosa_wichuraiana	Rw1G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	244, 1012
AccIII	TCCGGA	1 cut(s)	268
AciI	CCGC	8 cut(s)	169, 181, 191, 194, 244, 328, 963, 1170
AclI	AACGTT	1 cut(s)	45
AclWI	GGATC	1 cut(s)	477
AcoI	YGGCCR	1 cut(s)	182
AcsI	RAATTY	2 cut(s)	1121, 1238
AcuI	CTGAAG	3 cut(s)	470, 717, 918
AfaI	GTAC	1 cut(s)	773
AfiI	CCNNNNNNNGG	3 cut(s)	374, 583, 797
AflII	CTTAAG	2 cut(s)	686, 1046
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	5 cut(s)	302, 524, 710, 919, 1109
AhdI	GACNNNNNGTC	1 cut(s)	1041
AloI	GAACNNNNNNTCC	2 cut(s)	705, 737
Alw21I	GWGCWC	1 cut(s)	907
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	477
Aor13HI	TCCGGA	1 cut(s)	268
AoxI	GGCC	2 cut(s)	30, 182
ApaI	GGGCCC	1 cut(s)	34
ApeKI	GCWGC	4 cut(s)	5, 349, 1082, 1244
ApoI	RAATTY	2 cut(s)	1121, 1238
AspLEI	GCGC	1 cut(s)	1012
AspS9I	GGNCC	2 cut(s)	30, 31
AsuHPI	GGTGA	5 cut(s)	151, 274, 464, 902, 1007
AsuII	TTCGAA	2 cut(s)	605, 1023
AsuNHI	GCTAGC	2 cut(s)	691, 931
BaeGI	GKGCMC	1 cut(s)	34
BanII	GRGCYC	2 cut(s)	34, 907
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	907
BbvI	GCAGC	4 cut(s)	17, 361, 1069, 1256
BccI	CCATC	2 cut(s)	1139, 1182
BceAI	ACGGC	3 cut(s)	228, 718, 1053
BclI	TGATCA	2 cut(s)	634, 793
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	8 cut(s)	509, 618, 692, 932, 1073, 1202, 1263, 1279
BfrI	CTTAAG	2 cut(s)	686, 1046
BisI	GCNGC	7 cut(s)	6, 182, 192, 195, 350, 1083, 1245
BlpI	GCTNAGC	1 cut(s)	954
BlsI	GCNGC	7 cut(s)	7, 183, 193, 196, 351, 1084, 1246
BmeRI	GACNNNNNGTC	1 cut(s)	1041
BmgT120I	GGNCC	2 cut(s)	30, 31
BmiI	GGNNCC	3 cut(s)	31, 32, 722
BmsI	GCATC	1 cut(s)	577
BmtI	GCTAGC	2 cut(s)	695, 935
BpiI	GAAGAC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	930
Bpu1102I	GCTNAGC	1 cut(s)	954
Bpu14I	TTCGAA	2 cut(s)	605, 1023
BpuEI	CTTGAG	1 cut(s)	1252
BsaJI	CCNNGG	1 cut(s)	724
BsaWI	WCCGGW	1 cut(s)	268
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	3 cut(s)	374, 583, 797
Bse1I	ACTGG	2 cut(s)	440, 1185
Bse3DI	GCAATG	2 cut(s)	106, 235
BseAI	TCCGGA	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	724
BseGI	GGATG	4 cut(s)	262, 592, 829, 1193
BseLI	CCNNNNNNNGG	3 cut(s)	374, 583, 797
BseMI	GCAATG	2 cut(s)	106, 235
BseMII	CTCAG	2 cut(s)	213, 299
BseNI	ACTGG	2 cut(s)	440, 1185
BseRI	GAGGAG	1 cut(s)	221
BseSI	GKGCMC	1 cut(s)	34
BseXI	GCAGC	4 cut(s)	17, 361, 1069, 1256
BseYI	CCCAGC	1 cut(s)	70
Bsh1236I	CGCG	2 cut(s)	244, 1012
BshFI	GGCC	2 cut(s)	32, 184
BsiHKAI	GWGCWC	1 cut(s)	907
BsiSI	CCGG	1 cut(s)	269
BslI	CCNNNNNNNGG	3 cut(s)	374, 583, 797
BsmAI	GTCTC	1 cut(s)	203
BsmBI	CGTCTC	1 cut(s)	203
BsmI	GAATGC	2 cut(s)	792, 1266
BsnI	GGCC	2 cut(s)	32, 184
Bsp119I	TTCGAA	2 cut(s)	605, 1023
Bsp120I	GGGCCC	1 cut(s)	30
Bsp1286I	GDGCHC	2 cut(s)	34, 907
Bsp13I	TCCGGA	1 cut(s)	268
Bsp143I	GATC	4 cut(s)	469, 634, 746, 793
Bsp1720I	GCTNAGC	1 cut(s)	954
BspACI	CCGC	8 cut(s)	169, 181, 191, 194, 244, 328, 963, 1170
BspANI	GGCC	2 cut(s)	32, 184
BspCNI	CTCAG	2 cut(s)	214, 298
BspEI	TCCGGA	1 cut(s)	268
BspFNI	CGCG	2 cut(s)	244, 1012
BspLI	GGNNCC	3 cut(s)	31, 32, 722
BspOI	GCTAGC	2 cut(s)	695, 935
BspPI	GGATC	1 cut(s)	477
BspT104I	TTCGAA	2 cut(s)	605, 1023
BspTI	CTTAAG	2 cut(s)	686, 1046
BsrDI	GCAATG	2 cut(s)	106, 235
BsrI	ACTGG	2 cut(s)	440, 1185
BssECI	CCNNGG	1 cut(s)	724
BssMI	GATC	4 cut(s)	469, 634, 746, 793
BssT1I	CCWWGG	1 cut(s)	724
Bst6I	CTCTTC	2 cut(s)	1209, 1248
BstAFI	CTTAAG	2 cut(s)	686, 1046
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstBI	TTCGAA	2 cut(s)	605, 1023
BstC8I	GCNNGC	5 cut(s)	199, 326, 441, 693, 933
BstDEI	CTNAG	4 cut(s)	222, 285, 716, 954
BstF5I	GGATG	4 cut(s)	262, 592, 829, 1193
BstFNI	CGCG	2 cut(s)	244, 1012
BstHHI	GCGC	1 cut(s)	1012
BstKTI	GATC	4 cut(s)	472, 637, 749, 796
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	4 cut(s)	469, 634, 746, 793
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 500, 1016
BstNSI	RCATGY	1 cut(s)	667
BstSLI	GKGCMC	1 cut(s)	34
BstUI	CGCG	2 cut(s)	244, 1012
BstV1I	GCAGC	4 cut(s)	17, 361, 1069, 1256
BstV2I	GAAGAC	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	32, 184
BtsCI	GGATG	4 cut(s)	262, 592, 829, 1193
BtsIMutI	CAGTG	1 cut(s)	1178
Cac8I	GCNNGC	5 cut(s)	199, 326, 441, 693, 933
CfoI	GCGC	1 cut(s)	1012
Cfr13I	GGNCC	2 cut(s)	30, 31
CseI	GACGC	1 cut(s)	959
Csp6I	GTAC	1 cut(s)	772
CviAII	CATG	8 cut(s)	35, 557, 610, 628, 655, 664, 1030, 1153
CviQI	GTAC	1 cut(s)	772
DdeI	CTNAG	4 cut(s)	222, 285, 716, 954
DpnI	GATC	4 cut(s)	471, 636, 748, 795
DpnII	GATC	4 cut(s)	469, 634, 746, 793
DriI	GACNNNNNGTC	1 cut(s)	1041
EaeI	YGGCCR	1 cut(s)	182
Eam1104I	CTCTTC	2 cut(s)	1209, 1248
Eam1105I	GACNNNNNGTC	1 cut(s)	1041
EarI	CTCTTC	2 cut(s)	1209, 1248
Ecl136II	GAGCTC	1 cut(s)	905
Eco130I	CCWWGG	1 cut(s)	724
Eco24I	GRGCYC	2 cut(s)	34, 907
Eco53kI	GAGCTC	1 cut(s)	905
Eco57I	CTGAAG	3 cut(s)	470, 717, 918
EcoICRI	GAGCTC	1 cut(s)	905
EcoO109I	RGGNCCY	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	724
EcoT22I	ATGCAT	1 cut(s)	982
EcoT38I	GRGCYC	2 cut(s)	34, 907
ErhI	CCWWGG	1 cut(s)	724
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	8 cut(s)	38, 560, 613, 631, 658, 667, 1033, 1156
FatI	CATG	8 cut(s)	34, 556, 609, 627, 654, 663, 1029, 1152
FauNDI	CATATG	1 cut(s)	982
FbaI	TGATCA	2 cut(s)	634, 793
Fnu4HI	GCNGC	7 cut(s)	6, 182, 192, 195, 350, 1083, 1245
FokI	GGATG	4 cut(s)	269, 599, 836, 1200
FriOI	GRGCYC	2 cut(s)	34, 907
Fsp4HI	GCNGC	7 cut(s)	6, 182, 192, 195, 350, 1083, 1245
FspBI	CTAG	8 cut(s)	509, 618, 692, 932, 1073, 1202, 1263, 1279
GlaI	GCGC	1 cut(s)	1011
GluI	GCNGC	7 cut(s)	6, 182, 192, 195, 350, 1083, 1245
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	930
HaeIII	GGCC	2 cut(s)	32, 184
HapII	CCGG	1 cut(s)	269
HgaI	GACGC	1 cut(s)	959
HhaI	GCGC	1 cut(s)	1012
Hin1II	CATG	8 cut(s)	38, 560, 613, 631, 658, 667, 1033, 1156
Hin6I	GCGC	1 cut(s)	1010
HinP1I	GCGC	1 cut(s)	1010
HindIII	AAGCTT	1 cut(s)	1103
HinfI	GANTC	4 cut(s)	92, 117, 265, 515
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	5 cut(s)	151, 274, 464, 902, 1007
Hpy166II	GTNNAC	1 cut(s)	856
Hpy188I	TCNGA	2 cut(s)	288, 1128
Hpy188III	TCNNGA	6 cut(s)	269, 368, 536, 830, 947, 1231
Hpy8I	GTNNAC	1 cut(s)	856
HpyAV	CCTTC	3 cut(s)	227, 607, 893
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	4 cut(s)	426, 923, 980, 1244
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 500, 1016
HpyF3I	CTNAG	4 cut(s)	222, 285, 716, 954
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	8 cut(s)	38, 560, 613, 631, 658, 667, 1033, 1156
HspAI	GCGC	1 cut(s)	1010
Kpn2I	TCCGGA	1 cut(s)	268
Ksp22I	TGATCA	2 cut(s)	634, 793
Kzo9I	GATC	4 cut(s)	469, 634, 746, 793
LmnI	GCTCC	2 cut(s)	726, 902
Lsp1109I	GCAGC	4 cut(s)	17, 361, 1069, 1256
LweI	GCATC	1 cut(s)	577
MaeI	CTAG	8 cut(s)	509, 618, 692, 932, 1073, 1202, 1263, 1279
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	3 cut(s)	157, 536, 640
MalI	GATC	4 cut(s)	471, 636, 748, 795
MboI	GATC	4 cut(s)	469, 634, 746, 793
MboII	GAAGA	8 cut(s)	13, 229, 476, 524, 710, 722, 1226, 1265
MhlI	GDGCHC	2 cut(s)	34, 907
MluCI	AATT	5 cut(s)	455, 498, 552, 1121, 1238
MlyI	GAGTC	1 cut(s)	274
MmeI	TCCRAC	3 cut(s)	66, 717, 1116
MnlI	CCTC	8 cut(s)	199, 339, 453, 577, 614, 826, 1026, 1210
Mph1103I	ATGCAT	1 cut(s)	982
MroI	TCCGGA	1 cut(s)	268
MseI	TTAA	5 cut(s)	450, 687, 869, 1047, 1118
MslI	CAYNNNNRTG	2 cut(s)	561, 818
MspA1I	CMGCKG	3 cut(s)	8, 181, 1172
MspCI	CTTAAG	2 cut(s)	686, 1046
MspI	CCGG	1 cut(s)	269
Mva1269I	GAATGC	2 cut(s)	792, 1266
MvnI	CGCG	2 cut(s)	244, 1012
MwoI	GCNNNNNNNGC	3 cut(s)	250, 500, 1016
NdeI	CATATG	1 cut(s)	982
NdeII	GATC	4 cut(s)	469, 634, 746, 793
NheI	GCTAGC	2 cut(s)	691, 931
NlaIII	CATG	8 cut(s)	38, 560, 613, 631, 658, 667, 1033, 1156
NlaIV	GGNNCC	3 cut(s)	31, 32, 722
NmuCI	GTSAC	2 cut(s)	157, 536
NsiI	ATGCAT	1 cut(s)	982
NspI	RCATGY	1 cut(s)	667
NspV	TTCGAA	2 cut(s)	605, 1023
PciI	ACATGT	1 cut(s)	663
PctI	GAATGC	2 cut(s)	792, 1266
PfeI	GAWTC	3 cut(s)	92, 117, 515
PkrI	GCNGC	7 cut(s)	7, 183, 193, 196, 351, 1084, 1246
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
PscI	ACATGT	1 cut(s)	663
Psp124BI	GAGCTC	1 cut(s)	907
Psp1406I	AACGTT	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	70
PspN4I	GGNNCC	3 cut(s)	31, 32, 722
PspOMI	GGGCCC	1 cut(s)	30
PspPI	GGNCC	2 cut(s)	30, 31
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	1 cut(s)	773
RsaNI	GTAC	1 cut(s)	772
RseI	CAYNNNNRTG	2 cut(s)	561, 818
SacI	GAGCTC	1 cut(s)	907
SaqAI	TTAA	5 cut(s)	450, 687, 869, 1047, 1118
SatI	GCNGC	7 cut(s)	6, 182, 192, 195, 350, 1083, 1245
Sau3AI	GATC	4 cut(s)	469, 634, 746, 793
Sau96I	GGNCC	2 cut(s)	30, 31
SchI	GAGTC	1 cut(s)	274
SduI	GDGCHC	2 cut(s)	34, 907
SfaNI	GCATC	1 cut(s)	577
SfuI	TTCGAA	2 cut(s)	605, 1023
SmiMI	CAYNNNNRTG	2 cut(s)	561, 818
SmlI	CTYRAG	3 cut(s)	686, 1046, 1231
SmoI	CTYRAG	3 cut(s)	686, 1046, 1231
Sse9I	AATT	5 cut(s)	455, 498, 552, 1121, 1238
SsiI	CCGC	8 cut(s)	169, 181, 191, 194, 244, 328, 963, 1170
SspMI	CTAG	8 cut(s)	509, 618, 692, 932, 1073, 1202, 1263, 1279
SstI	GAGCTC	1 cut(s)	907
StyI	CCWWGG	1 cut(s)	724
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	4 cut(s)	95, 605, 829, 1023
TasI	AATT	5 cut(s)	455, 498, 552, 1121, 1238
TauI	GCSGC	3 cut(s)	184, 194, 197
TfiI	GAWTC	3 cut(s)	92, 117, 515
Tru1I	TTAA	5 cut(s)	450, 687, 869, 1047, 1118
Tru9I	TTAA	5 cut(s)	450, 687, 869, 1047, 1118
TscAI	CASTG	1 cut(s)	1185
TseFI	GTSAC	2 cut(s)	157, 536
TseI	GCWGC	4 cut(s)	5, 349, 1082, 1244
Tsp45I	GTSAC	2 cut(s)	157, 536
TspDTI	ATGAA	6 cut(s)	105, 246, 431, 545, 616, 626
TspRI	CASTG	1 cut(s)	1185
Vha464I	CTTAAG	2 cut(s)	686, 1046
XapI	RAATTY	2 cut(s)	1121, 1238
XceI	RCATGY	1 cut(s)	667
XspI	CTAG	8 cut(s)	509, 618, 692, 932, 1073, 1202, 1263, 1279
Zsp2I	ATGCAT	1 cut(s)	982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.