Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010020

Physical Location & Seq

Genomic Coordinates Reverse (-)

30414319 .. 30414880

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0213500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGATCAATAAGAACCTCACCAACCTTGTACGTTCCATCCTTAAGTTCTTCTTTATTTCTTCATGGATTGGCTTGGCCATGGCACAAACTAAAACCATCCCAGTGAACGTGGGAGTTGTTTTAGACCTCAATACACAGCATGGGAAATTTTGGTTGAGTTGCATCCAAATGGCACTGCCAGACTTCTATGCTACTCATGCTTACTACAAGACTAGGCTGGTTTTGAACATTAGGGACTCCAAACAAAGTGTAATGCATGCAGCTGATGCAGCTCATGTGCCCCATTATATCGATCATTTTCAGCAACAAGCCCTTCTCTTACTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

109

Amino Acids

12.49

Weight (kDa)

9.46

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01970
fragaria_vesca	FvH4_7g12010 FvH4_7g12010 FvH4_7g12010 FvH4_7g12010
malus_domestica	MD08G1028000.v1.1
prunus_persica	Prupe.2G146700_v2.0.a1 Prupe.2G146700_v2.0.a1 Prupe.2G146700_v2.0.a1
pyrus_communis	pycom08g02230
rosa_chinensis	RchiOBHm_Chr1g0350721
rosa_laevigata	RLG00000028460
rosa_multiflora	Rmu_sc0002150.1_g000007
rosa_roxburghii	Rroxscaffold_4G00304570
rosa_rugosa	Rorug01G0213400 Rorug01G0213500
rosa_samantha	Rh1AG227700 Rh1BG197200 Rh1CG212600 Rh1DG225100
rosa_wichuraiana	Rw1G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	146
AfaI	GTAC	1 cut(s)	30
AflII	CTTAAG	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	226
AluBI	AGCT	2 cut(s)	263, 272
AluI	AGCT	2 cut(s)	263, 272
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	260, 269
ApoI	RAATTY	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	10
BaeGI	GKGCMC	1 cut(s)	282
BalI	TGGCCA	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	272, 281
BccI	CCATC	2 cut(s)	44, 104
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	213
BfrI	CTTAAG	1 cut(s)	41
BisI	GCNGC	2 cut(s)	261, 270
BlsI	GCNGC	2 cut(s)	262, 271
BmrI	ACTGGG	1 cut(s)	95
BmsI	GCATC	2 cut(s)	171, 256
BmuI	ACTGGG	1 cut(s)	95
Bsa29I	ATCGAT	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	101
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	3 cut(s)	36, 96, 162
BseNI	ACTGG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	282
BseXI	GCAGC	2 cut(s)	272, 281
BshFI	GGCC	1 cut(s)	77
BshVI	ATCGAT	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	2 cut(s)	3, 292
Bsp19I	CCATGG	1 cut(s)	78
BspANI	GGCC	1 cut(s)	77
BspDI	ATCGAT	1 cut(s)	291
BspTI	CTTAAG	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	2 cut(s)	3, 292
BssT1I	CCWWGG	1 cut(s)	78
BstAFI	CTTAAG	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	258
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	3 cut(s)	36, 96, 162
BstKTI	GATC	2 cut(s)	6, 295
BstMBI	GATC	2 cut(s)	3, 292
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 266, 269
BstNSI	RCATGY	1 cut(s)	260
BstSLI	GKGCMC	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	272, 281
Bsu15I	ATCGAT	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	77
BsuTUI	ATCGAT	1 cut(s)	291
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	3 cut(s)	36, 96, 162
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	2 cut(s)	108, 173
Cac8I	GCNNGC	1 cut(s)	258
ClaI	ATCGAT	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	6 cut(s)	63, 79, 140, 197, 257, 275
CviJI	RGCY	6 cut(s)	72, 77, 217, 263, 272, 311
CviKI_1	RGCY	6 cut(s)	72, 77, 217, 263, 272, 311
CviQI	GTAC	1 cut(s)	29
DpnI	GATC	2 cut(s)	5, 294
DpnII	GATC	2 cut(s)	3, 292
EaeI	YGGCCR	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	6 cut(s)	66, 82, 143, 200, 260, 278
FaiI	YATR	8 cut(s)	64, 80, 141, 189, 198, 258, 276, 288
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	6 cut(s)	62, 78, 139, 196, 256, 274
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	261, 270
FokI	GGATG	3 cut(s)	23, 83, 149
Fsp4HI	GCNGC	2 cut(s)	261, 270
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	2 cut(s)	261, 270
HaeIII	GGCC	1 cut(s)	77
Hin1II	CATG	6 cut(s)	66, 82, 143, 200, 260, 278
HinfI	GANTC	1 cut(s)	236
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	106
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	323
HpyCH4IV	ACGT	2 cut(s)	31, 108
HpyCH4V	TGCA	4 cut(s)	162, 256, 260, 269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 266, 269
HpySE526I	ACGT	2 cut(s)	31, 108
Hsp92II	CATG	6 cut(s)	66, 82, 143, 200, 260, 278
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 292
LpnPI	CCDG	3 cut(s)	114, 192, 203
Lsp1109I	GCAGC	2 cut(s)	272, 281
LweI	GCATC	2 cut(s)	171, 256
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	2 cut(s)	31, 108
MalI	GATC	2 cut(s)	5, 294
MboI	GATC	2 cut(s)	3, 292
MboII	GAAGA	2 cut(s)	40, 51
MhlI	GDGCHC	1 cut(s)	282
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	1 cut(s)	146
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	2 cut(s)	26, 137
Mox20I	TGGCCA	1 cut(s)	77
Mph1103I	ATGCAT	1 cut(s)	258
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	2 cut(s)	101, 167
Msp20I	TGGCCA	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	263
MspCI	CTTAAG	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	197, 266, 269
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	2 cut(s)	3, 292
NlaIII	CATG	6 cut(s)	66, 82, 143, 200, 260, 278
NsiI	ATGCAT	1 cut(s)	258
NspI	RCATGY	1 cut(s)	260
PaeI	GCATGC	1 cut(s)	260
PkrI	GCNGC	2 cut(s)	262, 271
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
RseI	CAYNNNNRTG	2 cut(s)	101, 167
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	2 cut(s)	261, 270
Sau3AI	GATC	2 cut(s)	3, 292
SchI	GAGTC	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	7 cut(s)	18, 27, 34, 111, 129, 265, 274
SfaNI	GCATC	2 cut(s)	171, 256
SmiMI	CAYNNNNRTG	2 cut(s)	101, 167
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SphI	GCATGC	1 cut(s)	260
Sse9I	AATT	1 cut(s)	146
SspMI	CTAG	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	78
TaiI	ACGT	2 cut(s)	34, 111
TaqI	TCGA	1 cut(s)	291
TasI	AATT	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	2 cut(s)	108, 180
TseI	GCWGC	2 cut(s)	260, 269
TspDTI	ATGAA	2 cut(s)	51, 314
TspRI	CASTG	2 cut(s)	108, 180
Vha464I	CTTAAG	1 cut(s)	41
XapI	RAATTY	1 cut(s)	146
XceI	RCATGY	1 cut(s)	260
XspI	CTAG	1 cut(s)	213
Zsp2I	ATGCAT	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.