Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010020

Physical Location & Seq

Genomic Coordinates Reverse (-)

20302036 .. 20305002

Gene Structure 2967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G146700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGCAGCTTGCCACATTTTTTCCATGGCCACCTATGCTTCCAACATGATTTGCTATCCACACCCAGCAAACCCAGTAATCAACGGATTGAGAAAAACCCATCACCTCCAATTCACGGGCAGCACTTTCTGGGCAATCCCAATGAGTCTCTGCTCCAATGGCCACCATTTTCACCGACCCTTAGCGGCTGCAAGCGTGGAAGAGACAGCACAGACAGAAAGTAAAGACGGGAAGCCAAGGTTTAAGTTGGATGCGGTAGACCCTGAGATTACTGAAGCCCAGAAACAAGCTATAGCTCAATTGCCATATCATATGGCCAAACGTTGTAAGGCATTGATGAGGCAGCTCATTTGCTATTCTCCTCAGAAGGGTAGTTTGTGTGAGTTATTGGCTGCTTGGGTTAGGGCTATGAAGCCTAGCAGAGCTCACTGGCTTGCGGTTCTTAAAGAATTGAGGATAAAGGATCACCCACTTTATCTTCAGGTGGCAGAAATTGCTGTACTAGAAGAATCTTTTGAAGTCAATCTTCGTGACTATACCAAAATAATTCATGGTTATGGGAAGCAAAACCGAATTGAGGAAGCTGTTAAAATCCTTTCAAACATGAAGGCTAGAGGCTTCATATGTGATCAGGTAACTCTAACGGCCATGATTGACATGTATAGCAAGGCTGGACATGTTAAGCTGGCTGAAGAAACTTTTGAAGAAATTAAGCTCCTTGGGCAGCCATTGGATAAAAGATCGTATGGCTCAATGATCATGGCCTATATTAGAGCTGGAGTGCCTGATCAAGGAGAGAGTTTACTCATAGAAATGGATGCCCAAGAGATTTATGCTGGAAGTGAAGTTTACAAGGCATTGTTAAGAGCATACTCTATGGTTGGTGATACTGAAGGCGCTCAAAGAGTGTTCAATGCAGTTCAGCTAGCTGGTATTTCTCCGGATGCTAAGCTATGTGGACTTCTCATAAATGCATATGGTGTATCAGGTCAAAGTCAAAAGGCACGTGTTGCGTTTGAAAACATGAGGACGGCTGGTATTAGACCCACTGATAAATGTATAGCTCTAGTGTTGGCTGCTTATGAAAAGGAGAATAAACTTCAGAAGGCATTAAAATTTCTGATGGCGTTGGAGAGAGATGGTATCATGGTTGGGAAAGAAGCTGCAGAAACACTGGCGGCATGGTTTAGAAAACTAGGGGTTGTGGAAGAGGTGGATACAATCTTGAGAGAATTTGCAGAAACTGAAGCAAATTCCAGAGTTCCTGCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

425

Amino Acids

47.19

Weight (kDa)

8.25

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01970
fragaria_vesca	FvH4_7g12010 FvH4_7g12010 FvH4_7g12010 FvH4_7g12010
malus_domestica	MD08G1028000.v1.1
prunus_persica	Prupe.2G146700_v2.0.a1 Prupe.2G146700_v2.0.a1 Prupe.2G146700_v2.0.a1
pyrus_communis	pycom08g02230
rosa_chinensis	RchiOBHm_Chr1g0350721
rosa_laevigata	RLG00000028460
rosa_multiflora	Rmu_sc0002150.1_g000007
rosa_roxburghii	Rroxscaffold_4G00304570
rosa_rugosa	Rorug01G0213400 Rorug01G0213500
rosa_samantha	Rh1AG227700 Rh1BG197200 Rh1CG212600 Rh1DG225100
rosa_wichuraiana	Rw1G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	258
AccIII	TCCGGA	1 cut(s)	940
AciI	CCGC	4 cut(s)	185, 254, 437, 1178
AclI	AACGTT	1 cut(s)	322
AclWI	GGATC	1 cut(s)	471
AcoI	YGGCCR	4 cut(s)	27, 160, 315, 645
AcsI	RAATTY	3 cut(s)	1115, 1232, 1252
AcuI	CTGAAG	6 cut(s)	294, 464, 711, 912, 1085, 1266
AcvI	CACGTG	1 cut(s)	1007
AfaI	GTAC	1 cut(s)	501
AfiI	CCNNNNNNNGG	4 cut(s)	115, 368, 577, 791
AflIII	ACRYGT	3 cut(s)	657, 676, 1006
AgsI	TTSAA	5 cut(s)	518, 600, 704, 913, 1019
Alw21I	GWGCWC	1 cut(s)	427
Alw26I	GTCTC	2 cut(s)	152, 197
AlwI	GGATC	1 cut(s)	471
AlwNI	CAGNNNCTG	1 cut(s)	1244
Aor13HI	TCCGGA	1 cut(s)	940
AoxI	GGCC	5 cut(s)	27, 160, 315, 645, 762
ApeKI	GCWGC	8 cut(s)	5, 120, 188, 343, 392, 724, 1076, 1163
ApoI	RAATTY	3 cut(s)	1115, 1232, 1252
AspLEI	GCGC	1 cut(s)	899
AsuHPI	GGTGA	4 cut(s)	95, 164, 458, 896
AsuNHI	GCTAGC	1 cut(s)	925
BalI	TGGCCA	3 cut(s)	29, 162, 317
BanII	GRGCYC	1 cut(s)	427
BbrPI	CACGTG	1 cut(s)	1007
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	8 cut(s)	17, 132, 175, 355, 379, 736, 1063, 1150
BccI	CCATC	3 cut(s)	108, 1117, 1133
BceAI	ACGGC	2 cut(s)	660, 1047
BciVI	GTATCC	1 cut(s)	1210
BclI	TGATCA	3 cut(s)	628, 756, 787
BcoDI	GTCTC	2 cut(s)	152, 197
BfaI	CTAG	6 cut(s)	417, 503, 612, 926, 1067, 1196
BfmI	CTRYAG	2 cut(s)	291, 1164
BfoI	RGCGCY	1 cut(s)	900
BfuI	GTATCC	1 cut(s)	1210
BlpI	GCTNAGC	1 cut(s)	948
BmrI	ACTGGG	1 cut(s)	68
BmsI	GCATC	3 cut(s)	241, 808, 934
BmtI	GCTAGC	1 cut(s)	929
BmuI	ACTGGG	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	798
Bpu10I	CCTNAGC	1 cut(s)	181
Bpu1102I	GCTNAGC	1 cut(s)	948
BpuEI	CTTGAG	1 cut(s)	1246
BsaAI	YACGTR	1 cut(s)	1007
BsaJI	CCNNGG	3 cut(s)	24, 236, 718
BsaWI	WCCGGW	1 cut(s)	940
Bsc4I	CCNNNNNNNGG	4 cut(s)	115, 368, 577, 791
Bse1I	ACTGG	3 cut(s)	74, 434, 1179
BseAI	TCCGGA	1 cut(s)	940
BseDI	CCNNGG	3 cut(s)	24, 236, 718
BseGI	GGATG	3 cut(s)	256, 823, 949
BseLI	CCNNNNNNNGG	4 cut(s)	115, 368, 577, 791
BseMII	CTCAG	2 cut(s)	255, 377
BseNI	ACTGG	3 cut(s)	74, 434, 1179
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	8 cut(s)	17, 132, 175, 355, 379, 736, 1063, 1150
BseYI	CCCAGC	1 cut(s)	64
BshFI	GGCC	5 cut(s)	29, 162, 317, 647, 764
BsiHKAI	GWGCWC	1 cut(s)	427
BsiSI	CCGG	1 cut(s)	941
BslI	CCNNNNNNNGG	4 cut(s)	115, 368, 577, 791
BsmAI	GTCTC	2 cut(s)	152, 197
BsnI	GGCC	5 cut(s)	29, 162, 317, 647, 764
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp13I	TCCGGA	1 cut(s)	940
Bsp143I	GATC	5 cut(s)	463, 628, 740, 756, 787
Bsp1720I	GCTNAGC	1 cut(s)	948
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	4 cut(s)	185, 254, 437, 1178
BspANI	GGCC	5 cut(s)	29, 162, 317, 647, 764
BspCNI	CTCAG	2 cut(s)	256, 376
BspEI	TCCGGA	1 cut(s)	940
BspMAI	CTGCAG	1 cut(s)	1168
BspOI	GCTAGC	1 cut(s)	929
BspPI	GGATC	1 cut(s)	471
BsrI	ACTGG	3 cut(s)	74, 434, 1179
BssECI	CCNNGG	3 cut(s)	24, 236, 718
BssMI	GATC	5 cut(s)	463, 628, 740, 756, 787
BssT1I	CCWWGG	3 cut(s)	24, 236, 718
Bst6I	CTCTTC	2 cut(s)	195, 1203
BstAPI	GCANNNNNTGC	2 cut(s)	494, 1010
BstBAI	YACGTR	1 cut(s)	1007
BstC8I	GCNNGC	5 cut(s)	10, 193, 435, 687, 927
BstDEI	CTNAG	4 cut(s)	181, 264, 363, 948
BstDSI	CCRYGG	1 cut(s)	24
BstENI	CCTNNNNNAGG	1 cut(s)	789
BstF5I	GGATG	3 cut(s)	256, 823, 949
BstH2I	RGCGCY	1 cut(s)	900
BstHHI	GCGC	1 cut(s)	899
BstKTI	GATC	5 cut(s)	466, 631, 743, 759, 790
BstMAI	GTCTC	2 cut(s)	152, 197
BstMBI	GATC	5 cut(s)	463, 628, 740, 756, 787
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 159, 494, 721, 1010
BstNSI	RCATGY	2 cut(s)	661, 680
BstSFI	CTRYAG	2 cut(s)	291, 1164
BstV1I	GCAGC	8 cut(s)	17, 132, 175, 355, 379, 736, 1063, 1150
BsuI	GTATCC	1 cut(s)	1210
BsuRI	GGCC	5 cut(s)	29, 162, 317, 647, 764
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	3 cut(s)	256, 823, 949
BtsIMutI	CAGTG	3 cut(s)	427, 1047, 1172
Cac8I	GCNNGC	5 cut(s)	10, 193, 435, 687, 927
CaiI	CAGNNNCTG	1 cut(s)	1244
CfoI	GCGC	1 cut(s)	899
Csp6I	GTAC	1 cut(s)	500
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	4 cut(s)	181, 264, 363, 948
DpnI	GATC	5 cut(s)	465, 630, 742, 758, 789
DpnII	GATC	5 cut(s)	463, 628, 740, 756, 787
EaeI	YGGCCR	4 cut(s)	27, 160, 315, 645
Eam1104I	CTCTTC	2 cut(s)	195, 1203
EarI	CTCTTC	2 cut(s)	195, 1203
Ecl136II	GAGCTC	1 cut(s)	425
Eco130I	CCWWGG	3 cut(s)	24, 236, 718
Eco24I	GRGCYC	1 cut(s)	427
Eco53kI	GAGCTC	1 cut(s)	425
Eco57I	CTGAAG	6 cut(s)	294, 464, 711, 912, 1085, 1266
Eco72I	CACGTG	1 cut(s)	1007
EcoICRI	GAGCTC	1 cut(s)	425
EcoNI	CCTNNNNNAGG	1 cut(s)	789
EcoT14I	CCWWGG	3 cut(s)	24, 236, 718
EcoT22I	ATGCAT	1 cut(s)	976
EcoT38I	GRGCYC	1 cut(s)	427
ErhI	CCWWGG	3 cut(s)	24, 236, 718
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FauNDI	CATATG	3 cut(s)	312, 623, 976
FbaI	TGATCA	3 cut(s)	628, 756, 787
FblI	GTMKAC	1 cut(s)	258
FokI	GGATG	3 cut(s)	263, 830, 956
FriOI	GRGCYC	1 cut(s)	427
FspBI	CTAG	6 cut(s)	417, 503, 612, 926, 1067, 1196
GlaI	GCGC	1 cut(s)	898
GsaI	CCCAGC	1 cut(s)	68
GsuI	CTGGAG	1 cut(s)	798
HaeII	RGCGCY	1 cut(s)	900
HaeIII	GGCC	5 cut(s)	29, 162, 317, 647, 764
HapII	CCGG	1 cut(s)	941
HhaI	GCGC	1 cut(s)	899
Hin6I	GCGC	1 cut(s)	897
HinP1I	GCGC	1 cut(s)	897
HinfI	GANTC	2 cut(s)	145, 509
HpaII	CCGG	1 cut(s)	941
HphI	GGTGA	4 cut(s)	95, 164, 458, 896
Hpy166II	GTNNAC	4 cut(s)	259, 803, 850, 959
Hpy188I	TCNGA	3 cut(s)	366, 1104, 1122
Hpy188III	TCNNGA	4 cut(s)	530, 941, 1225, 1257
Hpy8I	GTNNAC	4 cut(s)	259, 803, 850, 959
HpyAV	CCTTC	4 cut(s)	361, 601, 887, 1099
HpyCH4IV	ACGT	2 cut(s)	322, 1006
HpyCH4V	TGCA	5 cut(s)	191, 917, 974, 1166, 1238
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 159, 494, 721, 1010
HpyF3I	CTNAG	4 cut(s)	181, 264, 363, 948
HpySE526I	ACGT	2 cut(s)	322, 1006
HspAI	GCGC	1 cut(s)	897
Kpn2I	TCCGGA	1 cut(s)	940
Ksp22I	TGATCA	3 cut(s)	628, 756, 787
Kzo9I	GATC	5 cut(s)	463, 628, 740, 756, 787
LmnI	GCTCC	2 cut(s)	158, 720
Lsp1109I	GCAGC	8 cut(s)	17, 132, 175, 355, 379, 736, 1063, 1150
LweI	GCATC	3 cut(s)	241, 808, 934
MaeI	CTAG	6 cut(s)	417, 503, 612, 926, 1067, 1196
MaeII	ACGT	2 cut(s)	322, 1006
MaeIII	GTNAC	2 cut(s)	530, 634
MalI	GATC	5 cut(s)	465, 630, 742, 758, 789
MboI	GATC	5 cut(s)	463, 628, 740, 756, 787
MboII	GAAGA	7 cut(s)	212, 470, 518, 518, 704, 716, 1220
MfeI	CAATTG	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	427
MlsI	TGGCCA	3 cut(s)	29, 162, 317
MluNI	TGGCCA	3 cut(s)	29, 162, 317
MlyI	GAGTC	1 cut(s)	154
MmeI	TCCRAC	3 cut(s)	66, 228, 1110
MnlI	CCTC	8 cut(s)	116, 333, 372, 447, 571, 608, 1020, 1204
Mox20I	TGGCCA	3 cut(s)	29, 162, 317
Mph1103I	ATGCAT	1 cut(s)	976
MroI	TCCGGA	1 cut(s)	940
MscI	TGGCCA	3 cut(s)	29, 162, 317
MseI	TTAA	7 cut(s)	243, 444, 588, 681, 711, 863, 1112
MslI	CAYNNNNRTG	2 cut(s)	555, 812
Msp20I	TGGCCA	3 cut(s)	29, 162, 317
MspI	CCGG	1 cut(s)	941
MunI	CAATTG	1 cut(s)	299
MwoI	GCNNNNNNNGC	5 cut(s)	35, 159, 494, 721, 1010
NcoI	CCATGG	1 cut(s)	24
NdeI	CATATG	3 cut(s)	312, 623, 976
NdeII	GATC	5 cut(s)	463, 628, 740, 756, 787
NheI	GCTAGC	1 cut(s)	925
NmuCI	GTSAC	1 cut(s)	530
NsiI	ATGCAT	1 cut(s)	976
NspI	RCATGY	2 cut(s)	661, 680
PciI	ACATGT	2 cut(s)	657, 676
PfeI	GAWTC	1 cut(s)	509
PleI	GAGTC	1 cut(s)	153
PmaCI	CACGTG	1 cut(s)	1007
PmlI	CACGTG	1 cut(s)	1007
PpsI	GAGTC	1 cut(s)	153
Ppu21I	YACGTR	1 cut(s)	1007
PscI	ACATGT	2 cut(s)	657, 676
Psp124BI	GAGCTC	1 cut(s)	427
Psp1406I	AACGTT	1 cut(s)	322
PspCI	CACGTG	1 cut(s)	1007
PspFI	CCCAGC	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	1168
PstNI	CAGNNNCTG	1 cut(s)	1244
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
RseI	CAYNNNNRTG	2 cut(s)	555, 812
SacI	GAGCTC	1 cut(s)	427
SaqAI	TTAA	7 cut(s)	243, 444, 588, 681, 711, 863, 1112
Sau3AI	GATC	5 cut(s)	463, 628, 740, 756, 787
SchI	GAGTC	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	427
SfaNI	GCATC	3 cut(s)	241, 808, 934
SfcI	CTRYAG	2 cut(s)	291, 1164
SmiMI	CAYNNNNRTG	2 cut(s)	555, 812
SmlI	CTYRAG	1 cut(s)	1225
SmoI	CTYRAG	1 cut(s)	1225
SsiI	CCGC	4 cut(s)	185, 254, 437, 1178
SspMI	CTAG	6 cut(s)	417, 503, 612, 926, 1067, 1196
SstI	GAGCTC	1 cut(s)	427
StyI	CCWWGG	3 cut(s)	24, 236, 718
TaiI	ACGT	2 cut(s)	325, 1009
TatI	WGTACW	1 cut(s)	499
TauI	GCSGC	2 cut(s)	188, 1181
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	7 cut(s)	243, 444, 588, 681, 711, 863, 1112
Tru9I	TTAA	7 cut(s)	243, 444, 588, 681, 711, 863, 1112
TscAI	CASTG	3 cut(s)	434, 1054, 1179
TseFI	GTSAC	1 cut(s)	530
TseI	GCWGC	8 cut(s)	5, 120, 188, 343, 392, 724, 1076, 1163
Tsp45I	GTSAC	1 cut(s)	530
TspDTI	ATGAA	6 cut(s)	425, 539, 610, 620, 1098, 1260
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	3 cut(s)	434, 1054, 1179
XagI	CCTNNNNNAGG	1 cut(s)	789
XapI	RAATTY	3 cut(s)	1115, 1232, 1252
XceI	RCATGY	2 cut(s)	661, 680
XmiI	GTMKAC	1 cut(s)	258
XspI	CTAG	6 cut(s)	417, 503, 612, 926, 1067, 1196
Zsp2I	ATGCAT	1 cut(s)	976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.