AT1G02040

C2H2-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012536
Physical Location & Seq
Reverse (-)
357906 .. 359078
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G02040.1

Sequence Viewer

Length: 975 bp
ATGCATGTGACTAGGAATGTTGGAAAAAGTCAAAAGTTGCACCACGTGTCGTTAAAGCAAGTGCTTAGCTACTTGGAACCACATGAACAAGAAGACACCAAACCCGTTACTTCCACTAAAAACAAGGGCTTTCTTCTTTTTAATTCACACCAAAACACTTTGAACACACACATGCATGGAGCCATGAACTCACCATGCATTGATTTCGTAATGTTCAGTCGTGGACAACACGATGAGGACAACATGTCACGTCGTCCTCCGTGGAAGAGGGAGAGATCGATGTCCACTCAGCATCATCATCTTAACTTGTCTCCAAACGAAGACGAAGAGCTTGCCAACTGTCTTGTCTTGTTGTCCAATTCAGGGGATGCGCATGGTGGTGATCAGCATAAACAACATGGACATGGTAAGGGCAAAACCGTCAAAAAGCAAAAAACCGCCCAGGTTTTCCAATGCAAAGCTTGCAAGAAGGTGTTCACGTCGCATCAGGCATTGGGTGGACACAGGGCAAGCCACAAGAAAGTGAAGGGTTGTTTTGCCTCTCAAGATAAAGAAGAGGAAGAGGAAGAGGAATACAAAGAAGACGACGACGACAACGACGAGGACGAAGATGAGGAGGAGGATGAGGAAGACAAATCAACGGCTCATATCGCAAGAAAGAGATCCAACGCTCACGAATGCACCATCTGCCATCGCGTCTTCTCTTCGGGACAGGCCTTAGGAGGCCACAAGCGATGCCATTGGCTAACACCTTCCAATTATCTTCGTATGACGTCGCTCCACGATCATCATCATTCCGTCGGCAGACCGCAGCCGTTAGATCAACCATCTCTCGATCTCAACTTAGCTTGCCAAGAATATTCCGTCGATCCAACGGCCATGAGCGTAGGGATGATCGAGAGAGATGGTGGTGGCAATAATCACAACGCTACTTCATCTTCGTGGTTAAAACTCGCAAGTGGTGATTGGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

324

Amino Acids

36.6

Weight (kDa)

6.26

Isoelectric Point (pI)

63.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 149 - 174 1.1e-08 C2H2-type zinc finger
zf-C2H2_6 PF13912 224 - 248 2.9e-11 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02040
fragaria_vesca FvH4_7g10970
malus_domestica MD02G1211300.v1.1 MD07G1113900.v1.1
prunus_persica Prupe.2G136600_v2.0.a1 Prupe.2G136600_v2.0.a1
pyrus_communis pycom07g09880 pycom1755g00040
rosa_chinensis RchiOBHm_Chr1g0348911
rosa_laevigata RLG00000028618
rosa_multiflora Rmu_sc0000156.1_g000017
rosa_roxburghii Rroxscaffold_4G00306530
rosa_rugosa Rorug01G0198400
rosa_samantha Rh1AG215800 Rh1BG182000 Rh1CG200200 Rh1DG211800
rosa_wichuraiana Rw1G018290 Rw1G018400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 776
Acc16I TGCGCA 1 cut(s) 372
AccII CGCG 1 cut(s) 696
AciI CCGC 2 cut(s) 438, 809
AclWI GGATC 2 cut(s) 657, 863
AcoI YGGCCR 1 cut(s) 876
AcvI CACGTG 1 cut(s) 46
AcyI GRCGYC 1 cut(s) 773
AdeI CACNNNGTG 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 363
AflIII ACRYGT 2 cut(s) 45, 243
AgsI TTSAA 1 cut(s) 163
AhdI GACNNNNNGTC 1 cut(s) 244
AjiI CACGTC 2 cut(s) 251, 480
AjnI CCWGG 1 cut(s) 441
AluBI AGCT 4 cut(s) 69, 331, 461, 848
AluI AGCT 4 cut(s) 69, 331, 461, 848
Alw26I GTCTC 1 cut(s) 315
AlwI GGATC 2 cut(s) 657, 863
AoxI GGCC 3 cut(s) 714, 724, 876
ApeKI GCWGC 1 cut(s) 811
Asp700I GAANNNNTTC 1 cut(s) 473
AspLEI GCGC 1 cut(s) 373
AsuHPI GGTGA 3 cut(s) 183, 392, 974
AxyI CCTNAGG 1 cut(s) 718
BbrPI CACGTG 1 cut(s) 46
BbsI GAAGAC 5 cut(s) 99, 327, 588, 636, 691
BbvI GCAGC 1 cut(s) 823
BccI CCATC 4 cut(s) 692, 699, 835, 899
BceAI ACGGC 3 cut(s) 657, 799, 891
BcgI CGANNNNNNTGC 4 cut(s) 187, 221, 314, 348
BciT130I CCWGG 1 cut(s) 443
BclI TGATCA 1 cut(s) 382
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 1 cut(s) 12
BisI GCNGC 1 cut(s) 812
BlpI GCTNAGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 813
Bme1390I CCNGG 1 cut(s) 443
BmeRI GACNNNNNGTC 1 cut(s) 244
BmgBI CACGTC 2 cut(s) 251, 480
BmiI GGNNCC 2 cut(s) 78, 181
BmrFI CCNGG 1 cut(s) 443
BmsI GCATC 4 cut(s) 301, 358, 493, 725
BpiI GAAGAC 5 cut(s) 99, 327, 588, 636, 691
Bpu1102I GCTNAGC 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 528
Bsa29I ATCGAT 1 cut(s) 278
BsaAI YACGTR 1 cut(s) 46
BsaBI GATNNNNATC 1 cut(s) 789
BsaHI GRCGYC 1 cut(s) 773
BsaJI CCNNGG 2 cut(s) 260, 441
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse21I CCTNAGG 1 cut(s) 718
Bse8I GATNNNNATC 1 cut(s) 789
BseBI CCWGG 1 cut(s) 443
BseCI ATCGAT 1 cut(s) 278
BseDI CCNNGG 2 cut(s) 260, 441
BseGI GGATG 3 cut(s) 373, 628, 897
BseJI GATNNNNATC 1 cut(s) 789
BseLI CCNNNNNNNGG 1 cut(s) 363
BseMII CTCAG 1 cut(s) 302
BseRI GAGGAG 2 cut(s) 629, 632
BseXI GCAGC 1 cut(s) 823
Bsh1236I CGCG 1 cut(s) 696
BshFI GGCC 3 cut(s) 716, 726, 878
BshVI ATCGAT 1 cut(s) 278
BslFI GGGAC 1 cut(s) 723
BslI CCNNNNNNNGG 1 cut(s) 363
BsmAI GTCTC 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 723
BsmI GAATGC 1 cut(s) 683
BsnI GGCC 3 cut(s) 716, 726, 878
Bsp143I GATC 8 cut(s) 275, 382, 662, 784, 820, 835, 868, 894
Bsp1720I GCTNAGC 1 cut(s) 65
BspACI CCGC 2 cut(s) 438, 809
BspANI GGCC 3 cut(s) 716, 726, 878
BspCNI CTCAG 1 cut(s) 301
BspDI ATCGAT 1 cut(s) 278
BspFNI CGCG 1 cut(s) 696
BspLI GGNNCC 2 cut(s) 78, 181
BspPI GGATC 2 cut(s) 657, 863
BspQI GCTCTTC 1 cut(s) 321
BssECI CCNNGG 2 cut(s) 260, 441
BssMI GATC 8 cut(s) 275, 382, 662, 784, 820, 835, 868, 894
BssNI GRCGYC 1 cut(s) 773
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 2 cut(s) 341, 421
Bst6I CTCTTC 6 cut(s) 260, 321, 549, 555, 561, 709
BstACI GRCGYC 1 cut(s) 773
BstAPI GCANNNNNTGC 2 cut(s) 462, 687
BstBAI YACGTR 1 cut(s) 46
BstC8I GCNNGC 4 cut(s) 333, 463, 511, 850
BstDEI CTNAG 4 cut(s) 65, 288, 718, 844
BstDSI CCRYGG 1 cut(s) 260
BstF5I GGATG 3 cut(s) 373, 628, 897
BstFNI CGCG 1 cut(s) 696
BstHHI GCGC 1 cut(s) 373
BstKTI GATC 8 cut(s) 278, 385, 665, 787, 823, 838, 871, 897
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 8 cut(s) 275, 382, 662, 784, 820, 835, 868, 894
BstMWI GCNNNNNNNGC 3 cut(s) 462, 650, 687
BstNI CCWGG 1 cut(s) 443
BstNSI RCATGY 3 cut(s) 8, 175, 247
BstSCI CCNGG 1 cut(s) 441
BstUI CGCG 1 cut(s) 696
BstV1I GCAGC 1 cut(s) 823
BstV2I GAAGAC 5 cut(s) 99, 327, 588, 636, 691
BstX2I RGATCY 1 cut(s) 662
BstYI RGATCY 1 cut(s) 662
Bsu15I ATCGAT 1 cut(s) 278
Bsu36I CCTNAGG 1 cut(s) 718
BsuRI GGCC 3 cut(s) 716, 726, 878
BsuTUI ATCGAT 1 cut(s) 278
BtgI CCRYGG 1 cut(s) 260
BtgZI GCGATG 2 cut(s) 677, 748
BtrI CACGTC 2 cut(s) 251, 480
BtsCI GGATG 3 cut(s) 373, 628, 897
Cac8I GCNNGC 4 cut(s) 333, 463, 511, 850
CfoI GCGC 1 cut(s) 373
ClaI ATCGAT 1 cut(s) 278
CseI GACGC 1 cut(s) 685
DdeI CTNAG 4 cut(s) 65, 288, 718, 844
DpnI GATC 8 cut(s) 277, 384, 664, 786, 822, 837, 870, 896
DpnII GATC 8 cut(s) 275, 382, 662, 784, 820, 835, 868, 894
DraIII CACNNNGTG 1 cut(s) 46
DriI GACNNNNNGTC 1 cut(s) 244
EaeI YGGCCR 1 cut(s) 876
Eam1104I CTCTTC 6 cut(s) 260, 321, 549, 555, 561, 709
Eam1105I GACNNNNNGTC 1 cut(s) 244
EarI CTCTTC 6 cut(s) 260, 321, 549, 555, 561, 709
Eco147I AGGCCT 1 cut(s) 716
Eco72I CACGTG 1 cut(s) 46
Eco81I CCTNAGG 1 cut(s) 718
EcoRII CCWGG 1 cut(s) 441
EcoT22I ATGCAT 3 cut(s) 6, 177, 200
FaqI GGGAC 1 cut(s) 723
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 1 cut(s) 812
FokI GGATG 3 cut(s) 380, 635, 904
Fsp4HI GCNGC 1 cut(s) 812
FspAI RTGCGCAY 1 cut(s) 372
FspBI CTAG 1 cut(s) 12
FspI TGCGCA 1 cut(s) 372
GlaI GCGC 1 cut(s) 372
GluI GCNGC 1 cut(s) 812
HaeIII GGCC 3 cut(s) 716, 726, 878
HgaI GACGC 1 cut(s) 685
HhaI GCGC 1 cut(s) 373
Hin1I GRCGYC 1 cut(s) 773
Hin6I GCGC 1 cut(s) 371
HinP1I GCGC 1 cut(s) 371
HindIII AAGCTT 1 cut(s) 459
HphI GGTGA 3 cut(s) 183, 392, 974
Hpy166II GTNNAC 4 cut(s) 224, 285, 477, 500
Hpy188III TCNNGA 6 cut(s) 545, 674, 708, 833, 898, 972
Hpy8I GTNNAC 4 cut(s) 224, 285, 477, 500
Hpy99I CGWCG 8 cut(s) 255, 484, 590, 593, 602, 778, 803, 869
HpyAV CCTTC 3 cut(s) 463, 520, 762
HpyCH4III ACNGT 2 cut(s) 341, 421
HpyCH4IV ACGT 4 cut(s) 45, 250, 479, 773
HpyCH4V TGCA 7 cut(s) 4, 40, 175, 198, 456, 465, 681
HpyF10VI GCNNNNNNNGC 3 cut(s) 462, 650, 687
HpyF3I CTNAG 4 cut(s) 65, 288, 718, 844
HpySE526I ACGT 4 cut(s) 45, 250, 479, 773
Hsp92I GRCGYC 1 cut(s) 773
HspAI GCGC 1 cut(s) 371
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 8 cut(s) 275, 382, 662, 784, 820, 835, 868, 894
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 2 cut(s) 179, 783
LpnPI CCDG 6 cut(s) 348, 428, 455, 473, 490, 698
Lsp1109I GCAGC 1 cut(s) 823
LweI GCATC 4 cut(s) 301, 358, 493, 725
MaeI CTAG 1 cut(s) 12
MaeII ACGT 4 cut(s) 45, 250, 479, 773
MaeIII GTNAC 3 cut(s) 7, 106, 246
MalI GATC 8 cut(s) 277, 384, 664, 786, 822, 837, 870, 896
MboI GATC 8 cut(s) 275, 382, 662, 784, 820, 835, 868, 894
MflI RGATCY 1 cut(s) 662
MluCI AATT 3 cut(s) 142, 358, 757
MmeI TCCRAC 2 cut(s) 690, 896
Mph1103I ATGCAT 3 cut(s) 6, 177, 200
MroXI GAANNNNTTC 1 cut(s) 473
MseI TTAA 4 cut(s) 53, 141, 303, 947
MslI CAYNNNNRTG 5 cut(s) 170, 174, 378, 402, 940
MspR9I CCNGG 1 cut(s) 443
Mva1269I GAATGC 1 cut(s) 683
MvaI CCWGG 1 cut(s) 443
MvnI CGCG 1 cut(s) 696
MwoI GCNNNNNNNGC 3 cut(s) 462, 650, 687
NdeII GATC 8 cut(s) 275, 382, 662, 784, 820, 835, 868, 894
NlaIV GGNNCC 2 cut(s) 78, 181
NmuCI GTSAC 2 cut(s) 7, 246
NsbI TGCGCA 1 cut(s) 372
NsiI ATGCAT 3 cut(s) 6, 177, 200
NspI RCATGY 3 cut(s) 8, 175, 247
PceI AGGCCT 1 cut(s) 716
PciI ACATGT 1 cut(s) 243
PciSI GCTCTTC 1 cut(s) 321
PcsI WCGNNNNNNNCGW 3 cut(s) 594, 597, 603
PctI GAATGC 1 cut(s) 683
PdmI GAANNNNTTC 1 cut(s) 473
PkrI GCNGC 1 cut(s) 813
PmaCI CACGTG 1 cut(s) 46
PmlI CACGTG 1 cut(s) 46
Ppu21I YACGTR 1 cut(s) 46
PscI ACATGT 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 441
PspCI CACGTG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 2 cut(s) 78, 181
PsuI RGATCY 1 cut(s) 662
RseI CAYNNNNRTG 5 cut(s) 170, 174, 378, 402, 940
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 4 cut(s) 53, 141, 303, 947
SatI GCNGC 1 cut(s) 812
Sau3AI GATC 8 cut(s) 275, 382, 662, 784, 820, 835, 868, 894
ScrFI CCNGG 1 cut(s) 443
SfaNI GCATC 4 cut(s) 301, 358, 493, 725
SmiMI CAYNNNNRTG 5 cut(s) 170, 174, 378, 402, 940
SmlI CTYRAG 1 cut(s) 543
SmoI CTYRAG 1 cut(s) 543
Sse9I AATT 3 cut(s) 142, 358, 757
SseBI AGGCCT 1 cut(s) 716
SsiI CCGC 2 cut(s) 438, 809
SspI AATATT 1 cut(s) 860
SspMI CTAG 1 cut(s) 12
StuI AGGCCT 1 cut(s) 716
StyD4I CCNGG 1 cut(s) 441
TaaI ACNGT 2 cut(s) 341, 421
TaiI ACGT 4 cut(s) 48, 253, 482, 776
TaqI TCGA 4 cut(s) 278, 834, 867, 897
TasI AATT 3 cut(s) 142, 358, 757
Tru1I TTAA 4 cut(s) 53, 141, 303, 947
Tru9I TTAA 4 cut(s) 53, 141, 303, 947
TseFI GTSAC 2 cut(s) 7, 246
TseI GCWGC 1 cut(s) 811
Tsp45I GTSAC 2 cut(s) 7, 246
TspDTI ATGAA 3 cut(s) 99, 200, 924
TspGWI ACGGA 3 cut(s) 249, 787, 853
XceI RCATGY 3 cut(s) 8, 175, 247
XmnI GAANNNNTTC 1 cut(s) 473
XspI CTAG 1 cut(s) 12
ZraI GACGTC 1 cut(s) 774
Zsp2I ATGCAT 3 cut(s) 6, 177, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.