Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0012536

Physical Location & Seq

Genomic Coordinates Reverse (-)

22469667 .. 22471139

Gene Structure 1473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1211300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGGCTTTGATTGTCGACCAGCAATCAAGCTTCAAACATTTCTGTAAAATTTGCAAGAAAGGTTTTGGGTGTGGTAGAGCGTTAGGAGGGCACATGAGGGCACATGGAATAGGGGATGAAGGTCACATCGACGACGATGATCCTCCTAGTGATTGGGAGGATAAACTTGGCGGCAATGTACCCTCCACCAACAAGTGCATGTATGCCCTAAGAAAAAACCCAAATCGCCTCAAAAGCTGCCGGGTTTGTGAGAATTGTGGCAAAGAATTCTTGTCCTGGAAATCCTTCCTTGAACATGGGAAATGTAGTAGCTCTGTAGATGCAGAGTCCCTTGTGTCCTCGCCAGGCTCTGATGGGGAGGATGGGAATGGTGGCCGCCGGCGAGGATGTGGGTGGTCAAAAAGGAAGAGATCATTTAGAGCCAAAGTGGGAAATTTCAGTCCACATTGCCCATCAAATGAGGAAGAAGACCTTGCCAATTGCTTAATGATGTTGTCTAATGCCACGGTGGATCCAATGGAGGTAGAACCAGAAGAGTCTTGTGCTTCGGCTAGCAAAGAGGAGGAACGAAGAAACCCTATGAACATAATGAGTCCTATGTCACGTGGGTTGACAATTGACAACAATAAGTTGAAAGGGGTCGCTAATAAAGCCTTGTTCGAATGTAAAGCATGCAAGAAAGTGTTCAATTCCCACCAAGCATTGGGCGGTCATAGGGCTAGCCACAAGAAAGTTAAAGGGTGCTTTGCCGCCAGGCTTGATCACCTCGAAGATAGTATGGCTGATGATGATGTCATCACACATGAAGAGTTCTTTCCCAATAAATCCAATTCAACCCTACAATTCGATCATGGGTCTAATACTCCATCAGCTTATACCTCGAAGAGAAAATCGAAGGTGCATGAATGTTCAATATGTCATCGTATATTCTCATCAGGGCAGGCATTGGGTGGGCACAAGAGGTGTCATTGGATCACGTCCAACTCCACGACAAACACGTATACTCTAGCCAAGTTCCATGAATTTCAAGAGAGTTTGGAGCAACAAATGATGAACCAAAAGCCTATGTTTGATGCTTCGGATCCACTTGATCTGAAGCTTGATCTTAACCTACCGGCTCCAATGGATGAGAATGGAGTAGGTAGAAGAGAGCGTCCTAATCCATCAAGCTTGGATGTCTCTACAAATTTCTTTTTACAGCCATGGATTGGGACAAAGGAGGAGGACAATCCTCAACACCACTCACACCACCAAAACGACAATGACAACATTAACAACAACGGCTATAATCATAATAACAACAACAATAATAACAGCAGTGATGTGTCAATGCAGAATGCGGTTGATGAAGCAGACAGTAAGGCAAAGTTAGCAAAGCTAAGTGAACTAAAGGATATTACCAACAGTGGGGGCTCCTCACCATGGTTGCAGGTGGGGATTGGTTCAACAACTGATGTTGGAGCTGACCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

491

Amino Acids

54.15

Weight (kDa)

6.34

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	220 - 244	1.4e-09	C2H2-type zinc finger
zf-C2H2_6	PF13912	300 - 324	1.2e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02040
fragaria_vesca	FvH4_7g10970
malus_domestica	MD02G1211300.v1.1 MD07G1113900.v1.1
prunus_persica	Prupe.2G136600_v2.0.a1 Prupe.2G136600_v2.0.a1
pyrus_communis	pycom07g09880 pycom1755g00040
rosa_chinensis	RchiOBHm_Chr1g0348911
rosa_laevigata	RLG00000028618
rosa_multiflora	Rmu_sc0000156.1_g000017
rosa_roxburghii	Rroxscaffold_4G00306530
rosa_rugosa	Rorug01G0198400
rosa_samantha	Rh1AG215800 Rh1BG182000 Rh1CG200200 Rh1DG211800
rosa_wichuraiana	Rw1G018290 Rw1G018400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1420
Acc36I	ACCTGC	1 cut(s)	1420
AccB7I	CCANNNNNTGG	2 cut(s)	703, 1208
AccI	GTMKAC	2 cut(s)	15, 1001
AciI	CCGC	5 cut(s)	171, 376, 708, 750, 1340
AclWI	GGATC	6 cut(s)	134, 506, 519, 980, 1076, 1089
AcoI	YGGCCR	1 cut(s)	373
AcsI	RAATTY	5 cut(s)	48, 266, 433, 1022, 1186
AcuI	CTGAAG	1 cut(s)	1115
AcvI	CACGTG	1 cut(s)	605
AfaI	GTAC	1 cut(s)	180
AfiI	CCNNNNNNNGG	4 cut(s)	703, 1208, 1407, 1422
AflIII	ACRYGT	1 cut(s)	996
AgsI	TTSAA	8 cut(s)	34, 293, 634, 688, 834, 912, 1028, 1446
AjiI	CACGTC	1 cut(s)	978
AjnI	CCWGG	3 cut(s)	275, 343, 752
AluBI	AGCT	8 cut(s)	30, 237, 312, 872, 1099, 1170, 1378, 1463
AluI	AGCT	8 cut(s)	30, 237, 312, 872, 1099, 1170, 1378, 1463
Alw26I	GTCTC	1 cut(s)	1183
AlwI	GGATC	6 cut(s)	134, 506, 519, 980, 1076, 1089
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	1 cut(s)	373
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	5 cut(s)	48, 266, 433, 1022, 1186
Asp700I	GAANNNNTTC	2 cut(s)	284, 683
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	755, 1410
AsuII	TTCGAA	1 cut(s)	660
AsuNHI	GCTAGC	2 cut(s)	551, 719
BaeGI	GKGCMC	3 cut(s)	93, 103, 957
BamHI	GGATCC	2 cut(s)	511, 1081
BanII	GRGCYC	1 cut(s)	1415
BbrPI	CACGTG	1 cut(s)	605
BbsI	GAAGAC	1 cut(s)	474
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	5 cut(s)	347, 356, 460, 874, 1171
BceAI	ACGGC	1 cut(s)	1297
BciT130I	CCWGG	3 cut(s)	277, 345, 754
BclI	TGATCA	1 cut(s)	760
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	1183
BfaI	CTAG	4 cut(s)	147, 552, 720, 1007
BfmI	CTRYAG	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	1420
BisI	GCNGC	4 cut(s)	172, 238, 376, 750
BlsI	GCNGC	4 cut(s)	173, 239, 377, 751
Bme1390I	CCNGG	4 cut(s)	242, 277, 345, 754
BmgBI	CACGTC	1 cut(s)	978
BmiI	GGNNCC	4 cut(s)	513, 1083, 1119, 1414
BmrFI	CCNGG	4 cut(s)	242, 277, 345, 754
BmsI	GCATC	2 cut(s)	310, 1063
BmtI	GCTAGC	2 cut(s)	555, 723
BpiI	GAAGAC	1 cut(s)	474
Bpu14I	TTCGAA	1 cut(s)	660
BpuMI	CCSGG	1 cut(s)	242
BsaAI	YACGTR	2 cut(s)	605, 999
BsaJI	CCNNGG	3 cut(s)	504, 1202, 1421
Bsc4I	CCNNNNNNNGG	4 cut(s)	703, 1208, 1407, 1422
Bse118I	RCCGGY	2 cut(s)	378, 1114
Bse3DI	GCAATG	2 cut(s)	181, 445
BseBI	CCWGG	3 cut(s)	277, 345, 754
BseDI	CCNNGG	3 cut(s)	504, 1202, 1421
BseGI	GGATG	5 cut(s)	121, 367, 392, 1132, 1180
BseLI	CCNNNNNNNGG	4 cut(s)	703, 1208, 1407, 1422
BseMI	GCAATG	2 cut(s)	181, 445
BseRI	GAGGAG	3 cut(s)	575, 1235, 1405
BseSI	GKGCMC	3 cut(s)	93, 103, 957
BseXI	GCAGC	1 cut(s)	224
BshFI	GGCC	1 cut(s)	375
BsiSI	CCGG	3 cut(s)	241, 379, 1115
BslFI	GGGAC	2 cut(s)	313, 1225
BslI	CCNNNNNNNGG	4 cut(s)	703, 1208, 1407, 1422
BsmAI	GTCTC	1 cut(s)	1183
BsmFI	GGGAC	2 cut(s)	313, 1225
BsmI	GAATGC	1 cut(s)	1342
BsnI	GGCC	1 cut(s)	375
Bsp119I	TTCGAA	1 cut(s)	660
Bsp1286I	GDGCHC	4 cut(s)	93, 103, 957, 1415
Bsp143I	GATC	9 cut(s)	139, 410, 511, 760, 847, 972, 1081, 1090, 1102
Bsp19I	CCATGG	2 cut(s)	1202, 1421
BspACI	CCGC	5 cut(s)	171, 376, 708, 750, 1340
BspANI	GGCC	1 cut(s)	375
BspLI	GGNNCC	4 cut(s)	513, 1083, 1119, 1414
BspMI	ACCTGC	1 cut(s)	1420
BspOI	GCTAGC	2 cut(s)	555, 723
BspPI	GGATC	6 cut(s)	134, 506, 519, 980, 1076, 1089
BspT104I	TTCGAA	1 cut(s)	660
BsrDI	GCAATG	2 cut(s)	181, 445
BsrFI	RCCGGY	2 cut(s)	378, 1114
BssAI	RCCGGY	2 cut(s)	378, 1114
BssECI	CCNNGG	3 cut(s)	504, 1202, 1421
BssMI	GATC	9 cut(s)	139, 410, 511, 760, 847, 972, 1081, 1090, 1102
BssNAI	GTATAC	1 cut(s)	1002
BssT1I	CCWWGG	2 cut(s)	1202, 1421
Bst1107I	GTATAC	1 cut(s)	1002
Bst2UI	CCWGG	3 cut(s)	277, 345, 754
Bst4CI	ACNGT	3 cut(s)	508, 1358, 1406
Bst6I	CTCTTC	5 cut(s)	401, 528, 801, 878, 1141
BstBAI	YACGTR	2 cut(s)	605, 999
BstBI	TTCGAA	1 cut(s)	660
BstC8I	GCNNGC	5 cut(s)	380, 553, 673, 721, 942
BstDEI	CTNAG	2 cut(s)	209, 1379
BstDSI	CCRYGG	3 cut(s)	504, 1202, 1421
BstF5I	GGATG	5 cut(s)	121, 367, 392, 1132, 1180
BstKTI	GATC	9 cut(s)	142, 413, 514, 763, 850, 975, 1084, 1093, 1105
BstMAI	GTCTC	1 cut(s)	1183
BstMBI	GATC	9 cut(s)	139, 410, 511, 760, 847, 972, 1081, 1090, 1102
BstMWI	GCNNNNNNNGC	3 cut(s)	234, 650, 1370
BstNI	CCWGG	3 cut(s)	277, 345, 754
BstNSI	RCATGY	2 cut(s)	202, 675
BstSCI	CCNGG	4 cut(s)	240, 275, 343, 752
BstSFI	CTRYAG	1 cut(s)	315
BstSLI	GKGCMC	3 cut(s)	93, 103, 957
BstV1I	GCAGC	1 cut(s)	224
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	2 cut(s)	511, 1081
BstYI	RGATCY	2 cut(s)	511, 1081
BstZ17I	GTATAC	1 cut(s)	1002
BsuRI	GGCC	1 cut(s)	375
BtgI	CCRYGG	3 cut(s)	504, 1202, 1421
BtrI	CACGTC	1 cut(s)	978
BtsCI	GGATG	5 cut(s)	121, 367, 392, 1132, 1180
BtsI	GCAGTG	1 cut(s)	1324
BtsIMutI	CAGTG	2 cut(s)	1324, 1411
BveI	ACCTGC	1 cut(s)	1420
Cac8I	GCNNGC	5 cut(s)	380, 553, 673, 721, 942
CaiI	CAGNNNCTG	1 cut(s)	350
Cfr10I	RCCGGY	2 cut(s)	378, 1114
CseI	GACGC	1 cut(s)	1142
Csp6I	GTAC	1 cut(s)	179
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	2 cut(s)	209, 1379
DpnI	GATC	9 cut(s)	141, 412, 513, 762, 849, 974, 1083, 1092, 1104
DpnII	GATC	9 cut(s)	139, 410, 511, 760, 847, 972, 1081, 1090, 1102
EaeI	YGGCCR	1 cut(s)	373
Eam1104I	CTCTTC	5 cut(s)	401, 528, 801, 878, 1141
EarI	CTCTTC	5 cut(s)	401, 528, 801, 878, 1141
Eco130I	CCWWGG	2 cut(s)	1202, 1421
Eco24I	GRGCYC	1 cut(s)	1415
Eco57I	CTGAAG	1 cut(s)	1115
Eco72I	CACGTG	1 cut(s)	605
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	3 cut(s)	275, 343, 752
EcoT14I	CCWWGG	2 cut(s)	1202, 1421
EcoT38I	GRGCYC	1 cut(s)	1415
ErhI	CCWWGG	2 cut(s)	1202, 1421
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FaqI	GGGAC	2 cut(s)	313, 1225
FbaI	TGATCA	1 cut(s)	760
FblI	GTMKAC	2 cut(s)	15, 1001
Fnu4HI	GCNGC	4 cut(s)	172, 238, 376, 750
FokI	GGATG	5 cut(s)	128, 374, 399, 1139, 1187
FriOI	GRGCYC	1 cut(s)	1415
Fsp4HI	GCNGC	4 cut(s)	172, 238, 376, 750
FspBI	CTAG	4 cut(s)	147, 552, 720, 1007
GluI	GCNGC	4 cut(s)	172, 238, 376, 750
HaeIII	GGCC	1 cut(s)	375
HapII	CCGG	3 cut(s)	241, 379, 1115
HgaI	GACGC	1 cut(s)	1142
HincII	GTYRAC	2 cut(s)	16, 612
HindII	GTYRAC	2 cut(s)	16, 612
HindIII	AAGCTT	3 cut(s)	28, 1097, 1168
HinfI	GANTC	3 cut(s)	326, 536, 592
HpaII	CCGG	3 cut(s)	241, 379, 1115
HphI	GGTGA	2 cut(s)	755, 1410
Hpy166II	GTNNAC	5 cut(s)	16, 443, 612, 1002, 1385
Hpy188I	TCNGA	3 cut(s)	352, 1081, 1095
Hpy188III	TCNNGA	1 cut(s)	1028
Hpy8I	GTNNAC	5 cut(s)	16, 443, 612, 1002, 1385
Hpy99I	CGWCG	2 cut(s)	134, 137
HpyAV	CCTTC	3 cut(s)	113, 295, 889
HpyCH4III	ACNGT	3 cut(s)	508, 1358, 1406
HpyCH4IV	ACGT	3 cut(s)	604, 977, 998
HpyCH4V	TGCA	7 cut(s)	54, 198, 323, 675, 901, 1333, 1429
HpyF10VI	GCNNNNNNNGC	3 cut(s)	234, 650, 1370
HpyF3I	CTNAG	2 cut(s)	209, 1379
HpySE526I	ACGT	3 cut(s)	604, 977, 998
KroI	GCCGGC	1 cut(s)	378
KroNI	GCCGGC	1 cut(s)	380
Ksp22I	TGATCA	1 cut(s)	760
Kzo9I	GATC	9 cut(s)	139, 410, 511, 760, 847, 972, 1081, 1090, 1102
LmnI	GCTCC	4 cut(s)	1039, 1123, 1418, 1460
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	2 cut(s)	310, 1063
MaeI	CTAG	4 cut(s)	147, 552, 720, 1007
MaeII	ACGT	3 cut(s)	604, 977, 998
MaeIII	GTNAC	2 cut(s)	122, 600
MalI	GATC	9 cut(s)	141, 412, 513, 762, 849, 974, 1083, 1092, 1104
MboI	GATC	9 cut(s)	139, 410, 511, 760, 847, 972, 1081, 1090, 1102
MboII	GAAGA	9 cut(s)	418, 476, 479, 545, 582, 782, 818, 895, 1158
MfeI	CAATTG	2 cut(s)	478, 615
MflI	RGATCY	2 cut(s)	511, 1081
MhlI	GDGCHC	4 cut(s)	93, 103, 957, 1415
MlyI	GAGTC	3 cut(s)	335, 545, 601
MmeI	TCCRAC	2 cut(s)	1005, 1438
MreI	CGCCGGCG	1 cut(s)	378
MroNI	GCCGGC	1 cut(s)	378
MroXI	GAANNNNTTC	2 cut(s)	284, 683
MseI	TTAA	4 cut(s)	485, 735, 1107, 1272
MspI	CCGG	3 cut(s)	241, 379, 1115
MspR9I	CCNGG	4 cut(s)	242, 277, 345, 754
MunI	CAATTG	2 cut(s)	478, 615
Mva1269I	GAATGC	1 cut(s)	1342
MvaI	CCWGG	3 cut(s)	277, 345, 754
MwoI	GCNNNNNNNGC	3 cut(s)	234, 650, 1370
NaeI	GCCGGC	1 cut(s)	380
NciI	CCSGG	1 cut(s)	242
NcoI	CCATGG	2 cut(s)	1202, 1421
NdeII	GATC	9 cut(s)	139, 410, 511, 760, 847, 972, 1081, 1090, 1102
NgoMIV	GCCGGC	1 cut(s)	378
NheI	GCTAGC	2 cut(s)	551, 719
NlaIV	GGNNCC	4 cut(s)	513, 1083, 1119, 1414
NmuCI	GTSAC	2 cut(s)	122, 600
NspI	RCATGY	2 cut(s)	202, 675
NspV	TTCGAA	1 cut(s)	660
PaeI	GCATGC	1 cut(s)	675
PaqCI	CACCTGC	1 cut(s)	1420
PcsI	WCGNNNNNNNCGW	1 cut(s)	995
PctI	GAATGC	1 cut(s)	1342
PdiI	GCCGGC	1 cut(s)	380
PdmI	GAANNNNTTC	2 cut(s)	284, 683
PflMI	CCANNNNNTGG	2 cut(s)	703, 1208
PfoI	TCCNGGA	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	173, 239, 377, 751
PleI	GAGTC	3 cut(s)	334, 544, 600
PmaCI	CACGTG	1 cut(s)	605
PmlI	CACGTG	1 cut(s)	605
PpsI	GAGTC	3 cut(s)	334, 544, 600
Ppu21I	YACGTR	2 cut(s)	605, 999
Psp6I	CCWGG	3 cut(s)	275, 343, 752
PspCI	CACGTG	1 cut(s)	605
PspGI	CCWGG	3 cut(s)	275, 343, 752
PspN4I	GGNNCC	4 cut(s)	513, 1083, 1119, 1414
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	2 cut(s)	511, 1081
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
SalI	GTCGAC	1 cut(s)	14
SaqAI	TTAA	4 cut(s)	485, 735, 1107, 1272
SatI	GCNGC	4 cut(s)	172, 238, 376, 750
Sau3AI	GATC	9 cut(s)	139, 410, 511, 760, 847, 972, 1081, 1090, 1102
SchI	GAGTC	3 cut(s)	335, 545, 601
ScrFI	CCNGG	4 cut(s)	242, 277, 345, 754
SduI	GDGCHC	4 cut(s)	93, 103, 957, 1415
SfaNI	GCATC	2 cut(s)	310, 1063
SfcI	CTRYAG	1 cut(s)	315
SfuI	TTCGAA	1 cut(s)	660
SgrAI	CRCCGGYG	1 cut(s)	378
SphI	GCATGC	1 cut(s)	675
SsiI	CCGC	5 cut(s)	171, 376, 708, 750, 1340
SspMI	CTAG	4 cut(s)	147, 552, 720, 1007
StyD4I	CCNGG	4 cut(s)	240, 275, 343, 752
StyI	CCWWGG	2 cut(s)	1202, 1421
TaaI	ACNGT	3 cut(s)	508, 1358, 1406
TaiI	ACGT	3 cut(s)	607, 980, 1001
TaqI	TCGA	7 cut(s)	15, 129, 660, 768, 846, 881, 893
TauI	GCSGC	3 cut(s)	174, 378, 752
Tru1I	TTAA	4 cut(s)	485, 735, 1107, 1272
Tru9I	TTAA	4 cut(s)	485, 735, 1107, 1272
TscAI	CASTG	2 cut(s)	1324, 1411
TseFI	GTSAC	2 cut(s)	122, 600
TseI	GCWGC	1 cut(s)	237
Tsp45I	GTSAC	2 cut(s)	122, 600
TspDTI	ATGAA	7 cut(s)	132, 596, 819, 918, 1035, 1067, 1362
TspRI	CASTG	2 cut(s)	1324, 1411
Van91I	CCANNNNNTGG	2 cut(s)	703, 1208
XapI	RAATTY	5 cut(s)	48, 266, 433, 1022, 1186
XceI	RCATGY	2 cut(s)	202, 675
XmiI	GTMKAC	2 cut(s)	15, 1001
XmnI	GAANNNNTTC	2 cut(s)	284, 683
XspI	CTAG	4 cut(s)	147, 552, 720, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.