pycom07g09880

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
9438035 .. 9439504
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g09880.1

Sequence Viewer

Length: 1470 bp
ATGGCTTTGATTGTCGACCAGCAATCAAGCTTTAAACACTTCTGTAAAATATGCAAGAAAGGTTTTGTGTGTGGTAGAGCGCTAGGAGGGCACATGAGGGCACATGGAATAGGGGATGAAGGTCACATCGACGACGACGATCCTCCGAGTGATTGGGAGGACAAACTCGGCGGCAATGTACCCGCTACCAACAAGTGCATGTATGCTCTAAGAACAAACCCTAATCGCCTAAAAAGCTGCCGGGTTTGTGAGAATTGTGGCAAAGAGTTCTTGTCTTGGAAATCCTTCCTTGAACATGGCAAATGTGGTAATTCTGTAGATGCCGAGTCCCTTGTGTCCTCGCCAGGCTCTGATGAGGAGGATGGGGGAGGTGGCAGCCGGCGAGGATGTGGGTGGTCAAAAAGGAAGAGATCTTTCAGAGCTAAAGTGGGAAATTTTAGTCCGCATTGCCCATCAAGTGAGGAAGAGGACCTTGCCAATTGCTTAATGATGTTGTCCAATGCCACGGTGGATCCAATGGAGGCAGAACCAGAAGAATCTTGTGCTTCAGCCAGCAAAGAAGAGGAACGAAGAAACCCTATGAACATCATGACACCTGTTTCACGTGGGGTGACAATTAACAACAATAAGGCTAAAGGGGTTGCCAATAAAGGTTTGTTCGAATGTAAAGCATGCAAGAAAGTATTCAATTCCCACCAAGCCTTGGGCGGTCATAGGGCTAGTCACAAGAAAGTTAAAGGGTGCTTTGCTGCCCGTCTTGATCATGTCGAAGATAGTATGGCGGATGATGATGCCATCACGCATGAAGAGTTCTTACCCAATAAACCCAATTCAACCCTACAATTTGACCATGGGTCGAATAATCCATCAGTTTATACCTCAAAGAGAAAATCTAAGGTGCATGAATGTTCAATATGCCATCGGATATTCTCATCAGGACAGGCATTGGGCGGGCACAAGAGGTGTCATTGGATCACGTCCAACGCCACGACAGACACTTCTACTCTAGTCAAGTTCCATGAATTTCAAGAGAGTTTGGAGCAGCAAATGATGAACCAAATGTCTAAGTTTGATGCTTCGGATCCGCTTGATCTGAAGCTCGATCTTAATCTACCTGCTCCGGTGGATGAGAATGGAGGAGGTAGAAGAGAGCGTCCCAATCCACCAAGCTTGGATGTATCTACAAATTTCTTTTTACAACCATGGACTGGGACAAAGGAGGAGGACAATCCCCATCACCACTCCCACCACCAAATCGACAATGACAACCTTAACAACGATGATTATAATACTAATAACAACAATAATAACAGCACTGATGTTTCAATGCAGAATGTAGTTGATGAAGGAGACAGTAAGGTGAAGTTAGCAAAGCTAAGTGAACTAAAGGATATTACCAACAGTGGGGGCTCCTCACCATGGTTGCAGGTGGGAATTGGTTCAACAACTGATGTTGGAGCTGAACCATAA

Protein Analysis

490

Amino Acids

53.76

Weight (kDa)

6.0

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 220 - 244 1.4e-09 C2H2-type zinc finger
zf-C2H2_6 PF13912 300 - 324 1.2e-10 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012536)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1287
AarI CACCTGC 1 cut(s) 1417
Acc36I ACCTGC 2 cut(s) 1123, 1417
AccB7I CCANNNNNTGG 2 cut(s) 703, 1208
AccI GTMKAC 1 cut(s) 15
AciI CCGC 7 cut(s) 171, 183, 443, 708, 782, 951, 1085
AclWI GGATC 6 cut(s) 134, 506, 519, 980, 1076, 1089
AcsI RAATTY 3 cut(s) 433, 1022, 1186
AcuI CTGAAG 2 cut(s) 531, 1115
AcvI CACGTG 1 cut(s) 605
AfaI GTAC 1 cut(s) 180
AfeI AGCGCT 1 cut(s) 81
AfiI CCNNNNNNNGG 4 cut(s) 703, 1208, 1404, 1419
AgsI TTSAA 7 cut(s) 293, 688, 834, 912, 1028, 1326, 1443
AhdI GACNNNNNGTC 1 cut(s) 853
AjiI CACGTC 1 cut(s) 978
AjnI CCWGG 1 cut(s) 343
AluBI AGCT 7 cut(s) 30, 237, 422, 1099, 1170, 1375, 1460
AluI AGCT 7 cut(s) 30, 237, 422, 1099, 1170, 1375, 1460
Alw26I GTCTC 1 cut(s) 1344
AlwI GGATC 6 cut(s) 134, 506, 519, 980, 1076, 1089
AlwNI CAGNNNCTG 1 cut(s) 350
Aor51HI AGCGCT 1 cut(s) 81
ApeKI GCWGC 4 cut(s) 237, 375, 749, 1042
ApoI RAATTY 3 cut(s) 433, 1022, 1186
Asp700I GAANNNNTTC 3 cut(s) 284, 683, 1438
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 469
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 4 cut(s) 622, 1229, 1372, 1407
AsuII TTCGAA 1 cut(s) 660
AvaII GGWCC 1 cut(s) 469
BaeGI GKGCMC 3 cut(s) 93, 103, 957
BamHI GGATCC 2 cut(s) 511, 1081
BanII GRGCYC 1 cut(s) 1412
BarI GAAGNNNNNNTAC 2 cut(s) 798, 830
BbrPI CACGTG 1 cut(s) 605
BbvI GCAGC 4 cut(s) 224, 387, 736, 1054
BccI CCATC 6 cut(s) 356, 460, 803, 874, 927, 1242
BciT130I CCWGG 1 cut(s) 345
BclI TGATCA 1 cut(s) 760
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 1344
BfaI CTAG 3 cut(s) 83, 720, 1007
BfmI CTRYAG 1 cut(s) 315
BfoI RGCGCY 1 cut(s) 83
BfuAI ACCTGC 2 cut(s) 1123, 1417
BglII AGATCT 1 cut(s) 410
BisI GCNGC 5 cut(s) 172, 238, 376, 750, 1043
BlsI GCNGC 5 cut(s) 173, 239, 377, 751, 1044
Bme1390I CCNGG 2 cut(s) 242, 345
Bme18I GGWCC 1 cut(s) 469
BmeRI GACNNNNNGTC 1 cut(s) 853
BmgBI CACGTC 1 cut(s) 978
BmgT120I GGNCC 1 cut(s) 469
BmiI GGNNCC 3 cut(s) 513, 1083, 1411
BmrFI CCNGG 2 cut(s) 242, 345
BmrI ACTGGG 1 cut(s) 1218
BmsI GCATC 3 cut(s) 310, 781, 1063
BmuI ACTGGG 1 cut(s) 1218
Bpu14I TTCGAA 1 cut(s) 660
BpuMI CCSGG 1 cut(s) 242
BsaAI YACGTR 1 cut(s) 605
BsaBI GATNNNNATC 1 cut(s) 1107
BsaJI CCNNGG 5 cut(s) 504, 702, 850, 1202, 1418
BsaWI WCCGGW 1 cut(s) 1120
Bsc4I CCNNNNNNNGG 4 cut(s) 703, 1208, 1404, 1419
Bse118I RCCGGY 1 cut(s) 378
Bse1I ACTGG 1 cut(s) 1213
Bse3DI GCAATG 2 cut(s) 181, 445
Bse8I GATNNNNATC 1 cut(s) 1107
BseBI CCWGG 1 cut(s) 345
BseDI CCNNGG 5 cut(s) 504, 702, 850, 1202, 1418
BseGI GGATG 6 cut(s) 121, 367, 392, 790, 1132, 1180
BseJI GATNNNNATC 1 cut(s) 1107
BseLI CCNNNNNNNGG 4 cut(s) 703, 1208, 1404, 1419
BseMI GCAATG 2 cut(s) 181, 445
BseNI ACTGG 1 cut(s) 1213
BseRI GAGGAG 4 cut(s) 371, 1152, 1235, 1402
BseSI GKGCMC 3 cut(s) 93, 103, 957
BseXI GCAGC 4 cut(s) 224, 387, 736, 1054
BsiSI CCGG 3 cut(s) 241, 379, 1121
BslFI GGGAC 3 cut(s) 313, 1140, 1225
BslI CCNNNNNNNGG 4 cut(s) 703, 1208, 1404, 1419
BsmAI GTCTC 1 cut(s) 1344
BsmFI GGGAC 3 cut(s) 313, 1140, 1225
Bsp119I TTCGAA 1 cut(s) 660
Bsp1286I GDGCHC 4 cut(s) 93, 103, 957, 1412
Bsp143I GATC 8 cut(s) 139, 410, 511, 760, 972, 1081, 1090, 1102
Bsp19I CCATGG 3 cut(s) 850, 1202, 1418
BspACI CCGC 7 cut(s) 171, 183, 443, 708, 782, 951, 1085
BspHI TCATGA 1 cut(s) 588
BspLI GGNNCC 3 cut(s) 513, 1083, 1411
BspMI ACCTGC 2 cut(s) 1123, 1417
BspPI GGATC 6 cut(s) 134, 506, 519, 980, 1076, 1089
BspT104I TTCGAA 1 cut(s) 660
BsrDI GCAATG 2 cut(s) 181, 445
BsrFI RCCGGY 1 cut(s) 378
BsrI ACTGG 1 cut(s) 1213
BssAI RCCGGY 1 cut(s) 378
BssECI CCNNGG 5 cut(s) 504, 702, 850, 1202, 1418
BssMI GATC 8 cut(s) 139, 410, 511, 760, 972, 1081, 1090, 1102
BssT1I CCWWGG 4 cut(s) 702, 850, 1202, 1418
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 3 cut(s) 508, 1355, 1403
Bst6I CTCTTC 5 cut(s) 401, 459, 555, 801, 1141
BstBAI YACGTR 1 cut(s) 605
BstBI TTCGAA 1 cut(s) 660
BstC8I GCNNGC 4 cut(s) 380, 553, 673, 953
BstDEI CTNAG 4 cut(s) 209, 894, 1065, 1376
BstDSI CCRYGG 4 cut(s) 504, 850, 1202, 1418
BstF5I GGATG 6 cut(s) 121, 367, 392, 790, 1132, 1180
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 8 cut(s) 142, 413, 514, 763, 975, 1084, 1093, 1105
BstMAI GTCTC 1 cut(s) 1344
BstMBI GATC 8 cut(s) 139, 410, 511, 760, 972, 1081, 1090, 1102
BstMWI GCNNNNNNNGC 2 cut(s) 88, 234
BstNI CCWGG 1 cut(s) 345
BstNSI RCATGY 2 cut(s) 202, 675
BstSCI CCNGG 2 cut(s) 240, 343
BstSFI CTRYAG 1 cut(s) 315
BstSLI GKGCMC 3 cut(s) 93, 103, 957
BstV1I GCAGC 4 cut(s) 224, 387, 736, 1054
BstX2I RGATCY 3 cut(s) 410, 511, 1081
BstYI RGATCY 3 cut(s) 410, 511, 1081
BtgI CCRYGG 4 cut(s) 504, 850, 1202, 1418
BtrI CACGTC 1 cut(s) 978
BtsCI GGATG 6 cut(s) 121, 367, 392, 790, 1132, 1180
BtsIMutI CAGTG 2 cut(s) 1314, 1408
BveI ACCTGC 2 cut(s) 1123, 1417
Cac8I GCNNGC 4 cut(s) 380, 553, 673, 953
CaiI CAGNNNCTG 1 cut(s) 350
CciI TCATGA 1 cut(s) 588
CfoI GCGC 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 378
Cfr13I GGNCC 1 cut(s) 469
CseI GACGC 1 cut(s) 1142
Csp6I GTAC 1 cut(s) 179
CspCI CAANNNNNGTGG 2 cut(s) 1152, 1187
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 4 cut(s) 209, 894, 1065, 1376
DpnI GATC 8 cut(s) 141, 412, 513, 762, 974, 1083, 1092, 1104
DpnII GATC 8 cut(s) 139, 410, 511, 760, 972, 1081, 1090, 1102
DraI TTTAAA 1 cut(s) 34
DriI GACNNNNNGTC 1 cut(s) 853
Eam1104I CTCTTC 5 cut(s) 401, 459, 555, 801, 1141
Eam1105I GACNNNNNGTC 1 cut(s) 853
EarI CTCTTC 5 cut(s) 401, 459, 555, 801, 1141
EciI GGCGGA 1 cut(s) 797
Eco130I CCWWGG 4 cut(s) 702, 850, 1202, 1418
Eco24I GRGCYC 1 cut(s) 1412
Eco47I GGWCC 1 cut(s) 469
Eco47III AGCGCT 1 cut(s) 81
Eco57I CTGAAG 2 cut(s) 531, 1115
Eco72I CACGTG 1 cut(s) 605
EcoO109I RGGNCCY 1 cut(s) 469
EcoRII CCWGG 1 cut(s) 343
EcoT14I CCWWGG 4 cut(s) 702, 850, 1202, 1418
EcoT38I GRGCYC 1 cut(s) 1412
ErhI CCWWGG 4 cut(s) 702, 850, 1202, 1418
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FaqI GGGAC 3 cut(s) 313, 1140, 1225
FauI CCCGC 2 cut(s) 190, 944
FbaI TGATCA 1 cut(s) 760
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 5 cut(s) 172, 238, 376, 750, 1043
FokI GGATG 6 cut(s) 128, 374, 399, 797, 1139, 1187
FriOI GRGCYC 1 cut(s) 1412
Fsp4HI GCNGC 5 cut(s) 172, 238, 376, 750, 1043
FspBI CTAG 3 cut(s) 83, 720, 1007
GlaI GCGC 1 cut(s) 81
GluI GCNGC 5 cut(s) 172, 238, 376, 750, 1043
HaeII RGCGCY 1 cut(s) 83
HapII CCGG 3 cut(s) 241, 379, 1121
HgaI GACGC 1 cut(s) 1142
HhaI GCGC 1 cut(s) 82
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 2 cut(s) 28, 1168
HinfI GANTC 2 cut(s) 326, 536
HpaII CCGG 3 cut(s) 241, 379, 1121
HphI GGTGA 4 cut(s) 622, 1229, 1372, 1407
Hpy166II GTNNAC 2 cut(s) 16, 1382
Hpy188I TCNGA 6 cut(s) 147, 352, 419, 924, 1081, 1095
Hpy188III TCNNGA 4 cut(s) 589, 758, 936, 1028
Hpy8I GTNNAC 2 cut(s) 16, 1382
Hpy99I CGWCG 3 cut(s) 134, 137, 140
HpyAV CCTTC 3 cut(s) 113, 295, 1340
HpyCH4III ACNGT 3 cut(s) 508, 1355, 1403
HpyCH4IV ACGT 2 cut(s) 604, 977
HpyCH4V TGCA 6 cut(s) 54, 198, 675, 901, 1330, 1426
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 234
HpyF3I CTNAG 4 cut(s) 209, 894, 1065, 1376
HpySE526I ACGT 2 cut(s) 604, 977
HspAI GCGC 1 cut(s) 80
KroI GCCGGC 1 cut(s) 378
KroNI GCCGGC 1 cut(s) 380
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 8 cut(s) 139, 410, 511, 760, 972, 1081, 1090, 1102
LmnI GCTCC 4 cut(s) 1039, 1123, 1415, 1457
Lsp1109I GCAGC 4 cut(s) 224, 387, 736, 1054
LweI GCATC 3 cut(s) 310, 781, 1063
MaeI CTAG 3 cut(s) 83, 720, 1007
MaeII ACGT 2 cut(s) 604, 977
MaeIII GTNAC 3 cut(s) 122, 610, 722
MalI GATC 8 cut(s) 141, 412, 513, 762, 974, 1083, 1092, 1104
MboI GATC 8 cut(s) 139, 410, 511, 760, 972, 1081, 1090, 1102
MboII GAAGA 8 cut(s) 418, 476, 545, 572, 582, 782, 818, 1158
MfeI CAATTG 1 cut(s) 478
MflI RGATCY 3 cut(s) 410, 511, 1081
MhlI GDGCHC 4 cut(s) 93, 103, 957, 1412
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 2 cut(s) 1005, 1435
MroNI GCCGGC 1 cut(s) 378
MroXI GAANNNNTTC 3 cut(s) 284, 683, 1438
MseI TTAA 6 cut(s) 33, 485, 618, 735, 1107, 1272
MspI CCGG 3 cut(s) 241, 379, 1121
MspR9I CCNGG 2 cut(s) 242, 345
MunI CAATTG 1 cut(s) 478
MvaI CCWGG 1 cut(s) 345
MwoI GCNNNNNNNGC 2 cut(s) 88, 234
NaeI GCCGGC 1 cut(s) 380
NciI CCSGG 1 cut(s) 242
NcoI CCATGG 3 cut(s) 850, 1202, 1418
NdeII GATC 8 cut(s) 139, 410, 511, 760, 972, 1081, 1090, 1102
NgoMIV GCCGGC 1 cut(s) 378
NlaIV GGNNCC 3 cut(s) 513, 1083, 1411
NmeAIII GCCGAG 2 cut(s) 147, 349
NmuCI GTSAC 3 cut(s) 122, 610, 722
NspI RCATGY 2 cut(s) 202, 675
NspV TTCGAA 1 cut(s) 660
PaeI GCATGC 1 cut(s) 675
PagI TCATGA 1 cut(s) 588
PaqCI CACCTGC 1 cut(s) 1417
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PdiI GCCGGC 1 cut(s) 380
PdmI GAANNNNTTC 3 cut(s) 284, 683, 1438
PfeI GAWTC 1 cut(s) 536
PflMI CCANNNNNTGG 2 cut(s) 703, 1208
PkrI GCNGC 5 cut(s) 173, 239, 377, 751, 1044
PleI GAGTC 1 cut(s) 334
PmaCI CACGTG 1 cut(s) 605
PmlI CACGTG 1 cut(s) 605
PpsI GAGTC 1 cut(s) 334
Ppu21I YACGTR 1 cut(s) 605
PpuMI RGGWCCY 1 cut(s) 469
PsiI TTATAA 1 cut(s) 1287
Psp5II RGGWCCY 1 cut(s) 469
Psp6I CCWGG 1 cut(s) 343
PspCI CACGTG 1 cut(s) 605
PspGI CCWGG 1 cut(s) 343
PspN4I GGNNCC 3 cut(s) 513, 1083, 1411
PspPI GGNCC 1 cut(s) 469
PspPPI RGGWCCY 1 cut(s) 469
PstNI CAGNNNCTG 1 cut(s) 350
PsuI RGATCY 3 cut(s) 410, 511, 1081
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SalI GTCGAC 1 cut(s) 14
SaqAI TTAA 6 cut(s) 33, 485, 618, 735, 1107, 1272
SatI GCNGC 5 cut(s) 172, 238, 376, 750, 1043
Sau3AI GATC 8 cut(s) 139, 410, 511, 760, 972, 1081, 1090, 1102
Sau96I GGNCC 1 cut(s) 469
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 2 cut(s) 242, 345
SduI GDGCHC 4 cut(s) 93, 103, 957, 1412
SfaNI GCATC 3 cut(s) 310, 781, 1063
SfcI CTRYAG 1 cut(s) 315
SfuI TTCGAA 1 cut(s) 660
SinI GGWCC 1 cut(s) 469
SphI GCATGC 1 cut(s) 675
SsiI CCGC 7 cut(s) 171, 183, 443, 708, 782, 951, 1085
SspMI CTAG 3 cut(s) 83, 720, 1007
StyD4I CCNGG 2 cut(s) 240, 343
StyI CCWWGG 4 cut(s) 702, 850, 1202, 1418
TaaI ACNGT 3 cut(s) 508, 1355, 1403
TaiI ACGT 2 cut(s) 607, 980
TaqI TCGA 7 cut(s) 15, 129, 660, 768, 857, 1101, 1257
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 1 cut(s) 536
Tru1I TTAA 6 cut(s) 33, 485, 618, 735, 1107, 1272
Tru9I TTAA 6 cut(s) 33, 485, 618, 735, 1107, 1272
TscAI CASTG 2 cut(s) 1321, 1408
TseFI GTSAC 3 cut(s) 122, 610, 722
TseI GCWGC 4 cut(s) 237, 375, 749, 1042
Tsp45I GTSAC 3 cut(s) 122, 610, 722
TspDTI ATGAA 7 cut(s) 132, 596, 819, 918, 1035, 1067, 1359
TspRI CASTG 2 cut(s) 1321, 1408
Van91I CCANNNNNTGG 2 cut(s) 703, 1208
VpaK11BI GGWCC 1 cut(s) 469
XapI RAATTY 3 cut(s) 433, 1022, 1186
XceI RCATGY 2 cut(s) 202, 675
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 3 cut(s) 284, 683, 1438
XspI CTAG 3 cut(s) 83, 720, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.