Rh1CG200200

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
43574518 .. 43577730
3213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG200200.1

Sequence Viewer

Length: 1425 bp
ATGAGGGCGCATGGAATCGGCGATGAGAGCGGCCAGATTGACGACGACGACGACCCGCCCAGCGATTGGGAGGACAAAATCGGCGGAGGCAACAACGTGCCTTCTACCAACAACAAATGCATGTACGCCTTAAGAACAAACCCTAATCGTTTGAAGACTTGCCGGAATTGCGAAAATTGTGGCAAGGAGTTCTTATCCTGGAAATCATTTCTCGAACACGGAAAATGCAGTAGCTCCATCGATGCAGCGGAGTCTTTGGTCTCATCACCGGATTACGAAGACGACAGGAGAGGGTGCAGCGGGTGGTCTAAAAGAAAGAGATCCTTGAGAGCAAAAGTGGGTACGTTTGGTAATTCACATTGCCCATCAAGTGAGGAAGAAGATCTAGCCAACTGCTTAATGATGTTATCTAATGCAACCGTTGATCCTATGGAAGCTGAACCAGAAGAATCTTGTGCTTCAGCTAGTAAAGAAGAAGAACGAATTCGAAACCCTATGAATAATTATATGGCTCCGATTTCCCGTGGGGTGGTCGTAGACAACAACAAGGCAAAAGGGATCGCTAATAAAGGTTTGTTCGAATGCAAAGCATGCAAGAAAGTTTTTAATTCTCATCAAGCCTTGGGTGGTCATAGGGCCAGCCACAAGAAGGTTAAGGGCTGCTTTGCTGCCCGCCTCGACCACCTCGAAGATAGTATGGCAGACGACGACGTTATTACCCACGAAGAGTTCTTCCCATCGAAACCAAACTCAAGTTTACAGTTCGACCACGGGTCTAATGGCCCATCGTCAGCCTATACCTCCAAGAGAAAATCGAAGGTGCACGAGTGCTCCATATGCCACCGGATTTTCTCTTCGGGGCAGGCGTTGGGCGGGCACAAGCGGTGTCATTGGATCACGTCTAACGCAGCGCCGGACACGTCCACTTTGGCCAAGTTCCATGAGTTTCAAGAAAGCATGGAGCAGCAAATGATGAACCAACAAAGGCCTAAGTTTGATACCACTTCTGATCCACTCGATCTCAAGCTTGATCTAAACCTTCCCGCTCCCGCTGCGGATGAGAATGGCGGAGGAGGAGGAAGAAGAGATCGTCCGATTACAAATCCAAATCCATCAAGCCTAGAGGTGTCTACAGATTTTTTTTTACAGTCTTGGGTGGGGACAAAAGAGGAGGACAATCTCCATCATCGTCTTCACTCCCACAACCAAATTGACAACGACAACAACATTATTAACAACGACGAATATAATGTTGATAACAACAATAATAGCAGTGGCTCAATGCAGAATCTGGTGGATGAAGCAGACAGTAAGGTAAAGTTAGCAAAGCTAAGTGAACTAAAGGATATCAACACAAGTGGGAGTTCCTCGCCATGGTTGCAAGTGGGGCTTGGTTCAACAACTAATGTTGCAGCTGACCCGTAA

Protein Analysis

474

Amino Acids

52.17

Weight (kDa)

5.59

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 193 - 217 1.4e-09 C2H2-type zinc finger
zf-C2H2_6 PF13912 274 - 298 1.2e-10 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012536)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 66
AccBSI CCGCTC 2 cut(s) 30, 1046
AccI GTMKAC 2 cut(s) 537, 1130
AclWI GGATC 5 cut(s) 315, 419, 566, 902, 1004
AcoI YGGCCR 2 cut(s) 31, 930
AcsI RAATTY 1 cut(s) 483
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 2 cut(s) 125, 343
AfiI CCNNNNNNNGG 4 cut(s) 66, 529, 649, 1374
AflII CTTAAG 1 cut(s) 130
AflIII ACRYGT 1 cut(s) 918
AgsI TTSAA 3 cut(s) 154, 950, 1398
AhdI GACNNNNNGTC 1 cut(s) 772
AjiI CACGTC 2 cut(s) 900, 921
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 6 cut(s) 234, 437, 464, 1027, 1330, 1415
AluI AGCT 6 cut(s) 234, 437, 464, 1027, 1330, 1415
Alw21I GWGCWC 2 cut(s) 825, 833
Alw26I GTCTC 1 cut(s) 265
Alw44I GTGCAC 1 cut(s) 821
AlwI GGATC 5 cut(s) 315, 419, 566, 902, 1004
AlwNI CAGNNNCTG 1 cut(s) 1291
AoxI GGCC 5 cut(s) 31, 636, 781, 930, 986
ApaLI GTGCAC 1 cut(s) 821
ApeKI GCWGC 8 cut(s) 245, 297, 660, 668, 908, 964, 1052, 1412
ApoI RAATTY 1 cut(s) 483
Asp700I GAANNNNTTC 1 cut(s) 483
AspLEI GCGC 2 cut(s) 10, 913
AspS9I GGNCC 2 cut(s) 636, 782
AsuHPI GGTGA 1 cut(s) 258
AsuII TTCGAA 2 cut(s) 487, 579
BaeGI GKGCMC 2 cut(s) 825, 879
BalI TGGCCA 1 cut(s) 932
BauI CACGAG 1 cut(s) 824
BbsI GAAGAC 3 cut(s) 161, 285, 1184
Bbv12I GWGCWC 2 cut(s) 825, 833
BbvI GCAGC 7 cut(s) 257, 309, 647, 655, 920, 976, 1039
BccI CCATC 6 cut(s) 245, 373, 745, 793, 1120, 1191
BciT130I CCWGG 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 265
BfaI CTAG 3 cut(s) 386, 465, 1121
BfmI CTRYAG 1 cut(s) 1131
BfoI RGCGCY 1 cut(s) 914
BfrI CTTAAG 1 cut(s) 130
BglII AGATCT 1 cut(s) 382
BisI GCNGC 9 cut(s) 31, 246, 298, 661, 669, 909, 965, 1053, 1413
BlsI GCNGC 9 cut(s) 32, 247, 299, 662, 670, 910, 966, 1054, 1414
Bme1390I CCNGG 1 cut(s) 199
BmeRI GACNNNNNGTC 1 cut(s) 772
BmgBI CACGTC 2 cut(s) 900, 921
BmgT120I GGNCC 2 cut(s) 636, 782
BmiI GGNNCC 1 cut(s) 513
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 1 cut(s) 232
BpiI GAAGAC 3 cut(s) 161, 285, 1184
Bpu14I TTCGAA 2 cut(s) 487, 579
BpuEI CTTGAG 3 cut(s) 346, 736, 1007
Bsa29I ATCGAT 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 265
BsaJI CCNNGG 4 cut(s) 523, 621, 769, 1373
BsaWI WCCGGW 2 cut(s) 268, 843
BsaXI ACNNNNNCTCC 2 cut(s) 815, 845
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 529, 649, 1374
Bse3DI GCAATG 1 cut(s) 358
BseBI CCWGG 1 cut(s) 199
BseCI ATCGAT 1 cut(s) 240
BseDI CCNNGG 4 cut(s) 523, 621, 769, 1373
BseGI GGATG 2 cut(s) 1063, 1303
BseLI CCNNNNNNNGG 4 cut(s) 66, 529, 649, 1374
BseMI GCAATG 1 cut(s) 358
BseRI GAGGAG 3 cut(s) 1086, 1089, 1184
BseSI GKGCMC 2 cut(s) 825, 879
BseXI GCAGC 7 cut(s) 257, 309, 647, 655, 920, 976, 1039
BseYI CCCAGC 1 cut(s) 59
BsgI GTGCAG 1 cut(s) 316
BshFI GGCC 5 cut(s) 33, 638, 783, 932, 988
BshVI ATCGAT 1 cut(s) 240
BsiHKAI GWGCWC 2 cut(s) 825, 833
BsiSI CCGG 4 cut(s) 163, 269, 844, 914
BslFI GGGAC 1 cut(s) 1174
BslI CCNNNNNNNGG 4 cut(s) 66, 529, 649, 1374
BsmAI GTCTC 1 cut(s) 265
BsmFI GGGAC 1 cut(s) 1174
BsmI GAATGC 1 cut(s) 587
BsnI GGCC 5 cut(s) 33, 638, 783, 932, 988
Bso31I GGTCTC 1 cut(s) 265
Bsp119I TTCGAA 2 cut(s) 487, 579
Bsp1286I GDGCHC 3 cut(s) 825, 833, 879
Bsp143I GATC 9 cut(s) 320, 382, 424, 558, 894, 1009, 1018, 1030, 1087
Bsp19I CCATGG 1 cut(s) 1373
BspANI GGCC 5 cut(s) 33, 638, 783, 932, 988
BspDI ATCGAT 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 513
BspPI GGATC 5 cut(s) 315, 419, 566, 902, 1004
BspT104I TTCGAA 2 cut(s) 487, 579
BspTI CTTAAG 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 265
BsrBI CCGCTC 2 cut(s) 30, 1046
BsrDI GCAATG 1 cut(s) 358
BssECI CCNNGG 4 cut(s) 523, 621, 769, 1373
BssMI GATC 9 cut(s) 320, 382, 424, 558, 894, 1009, 1018, 1030, 1087
BssSI CACGAG 1 cut(s) 824
BssT1I CCWWGG 2 cut(s) 621, 1373
Bst2BI CACGAG 1 cut(s) 824
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 4 cut(s) 421, 762, 1149, 1310
Bst6I CTCTTC 3 cut(s) 720, 859, 1078
BstAFI CTTAAG 1 cut(s) 130
BstAPI GCANNNNNTGC 1 cut(s) 591
BstBI TTCGAA 2 cut(s) 487, 579
BstC8I GCNNGC 5 cut(s) 592, 640, 673, 864, 875
BstDEI CTNAG 2 cut(s) 990, 1331
BstDSI CCRYGG 3 cut(s) 523, 769, 1373
BstF5I GGATG 2 cut(s) 1063, 1303
BstH2I RGCGCY 1 cut(s) 914
BstHHI GCGC 2 cut(s) 10, 913
BstKTI GATC 9 cut(s) 323, 385, 427, 561, 897, 1012, 1021, 1033, 1090
BstMAI GTCTC 1 cut(s) 265
BstMBI GATC 9 cut(s) 320, 382, 424, 558, 894, 1009, 1018, 1030, 1087
BstMWI GCNNNNNNNGC 7 cut(s) 27, 168, 591, 837, 1052, 1378, 1387
BstNI CCWGG 1 cut(s) 199
BstNSI RCATGY 2 cut(s) 124, 594
BstSCI CCNGG 1 cut(s) 197
BstSFI CTRYAG 1 cut(s) 1131
BstSLI GKGCMC 2 cut(s) 825, 879
BstV1I GCAGC 7 cut(s) 257, 309, 647, 655, 920, 976, 1039
BstV2I GAAGAC 3 cut(s) 161, 285, 1184
BstX2I RGATCY 2 cut(s) 320, 382
BstYI RGATCY 2 cut(s) 320, 382
Bsu15I ATCGAT 1 cut(s) 240
BsuRI GGCC 5 cut(s) 33, 638, 783, 932, 988
BsuTUI ATCGAT 1 cut(s) 240
BtgI CCRYGG 3 cut(s) 523, 769, 1373
BtgZI GCGATG 1 cut(s) 36
BtrI CACGTC 2 cut(s) 900, 921
BtsCI GGATG 2 cut(s) 1063, 1303
BtsI GCAGTG 1 cut(s) 1279
BtsIMutI CAGTG 1 cut(s) 1279
Cac8I GCNNGC 5 cut(s) 592, 640, 673, 864, 875
CaiI CAGNNNCTG 1 cut(s) 1291
CfoI GCGC 2 cut(s) 10, 913
Cfr13I GGNCC 2 cut(s) 636, 782
ClaI ATCGAT 1 cut(s) 240
Csp6I GTAC 2 cut(s) 124, 342
CspCI CAANNNNNGTGG 2 cut(s) 1339, 1374
CviAII CATG 6 cut(s) 11, 121, 591, 941, 958, 1374
CviQI GTAC 2 cut(s) 124, 342
DdeI CTNAG 2 cut(s) 990, 1331
DpnI GATC 9 cut(s) 322, 384, 426, 560, 896, 1011, 1020, 1032, 1089
DpnII GATC 9 cut(s) 320, 382, 424, 558, 894, 1009, 1018, 1030, 1087
DriI GACNNNNNGTC 1 cut(s) 772
EaeI YGGCCR 2 cut(s) 31, 930
Eam1104I CTCTTC 3 cut(s) 720, 859, 1078
Eam1105I GACNNNNNGTC 1 cut(s) 772
EarI CTCTTC 3 cut(s) 720, 859, 1078
EciI GGCGGA 2 cut(s) 99, 1083
Eco130I CCWWGG 2 cut(s) 621, 1373
Eco147I AGGCCT 1 cut(s) 988
Eco31I GGTCTC 1 cut(s) 265
Eco32I GATATC 1 cut(s) 1348
Eco57I CTGAAG 1 cut(s) 444
EcoRI GAATTC 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 197
EcoRV GATATC 1 cut(s) 1348
EcoT14I CCWWGG 2 cut(s) 621, 1373
EcoT22I ATGCAT 1 cut(s) 122
ErhI CCWWGG 2 cut(s) 621, 1373
FaeI CATG 6 cut(s) 14, 124, 594, 944, 961, 1377
FalI AAGNNNNNCTT 8 cut(s) 176, 208, 308, 340, 647, 679, 1374, 1406
FaqI GGGAC 1 cut(s) 1174
FatI CATG 6 cut(s) 10, 120, 590, 940, 957, 1373
FauI CCCGC 6 cut(s) 63, 293, 680, 866, 1051, 1057
FauNDI CATATG 1 cut(s) 836
FblI GTMKAC 2 cut(s) 537, 1130
Fnu4HI GCNGC 9 cut(s) 31, 246, 298, 661, 669, 909, 965, 1053, 1413
FokI GGATG 2 cut(s) 1070, 1310
Fsp4HI GCNGC 9 cut(s) 31, 246, 298, 661, 669, 909, 965, 1053, 1413
FspBI CTAG 3 cut(s) 386, 465, 1121
GlaI GCGC 2 cut(s) 9, 912
GluI GCNGC 9 cut(s) 31, 246, 298, 661, 669, 909, 965, 1053, 1413
GsaI CCCAGC 1 cut(s) 63
HaeII RGCGCY 1 cut(s) 914
HaeIII GGCC 5 cut(s) 33, 638, 783, 932, 988
HapII CCGG 4 cut(s) 163, 269, 844, 914
HhaI GCGC 2 cut(s) 10, 913
Hin1II CATG 6 cut(s) 14, 124, 594, 944, 961, 1377
Hin6I GCGC 2 cut(s) 8, 911
HinP1I GCGC 2 cut(s) 8, 911
HindIII AAGCTT 1 cut(s) 1025
HinfI GANTC 4 cut(s) 15, 251, 449, 1288
HpaII CCGG 4 cut(s) 163, 269, 844, 914
HphI GGTGA 1 cut(s) 258
Hpy166II GTNNAC 6 cut(s) 538, 758, 823, 924, 1131, 1337
Hpy188I TCNGA 3 cut(s) 516, 1009, 1095
Hpy188III TCNNGA 2 cut(s) 212, 950
Hpy8I GTNNAC 6 cut(s) 538, 758, 823, 924, 1131, 1337
Hpy99I CGWCG 6 cut(s) 47, 50, 53, 710, 713, 1244
HpyAV CCTTC 4 cut(s) 111, 643, 811, 1049
HpyCH4III ACNGT 4 cut(s) 421, 762, 1149, 1310
HpyCH4IV ACGT 5 cut(s) 96, 344, 711, 899, 920
HpyF10VI GCNNNNNNNGC 7 cut(s) 27, 168, 591, 837, 1052, 1378, 1387
HpyF3I CTNAG 2 cut(s) 990, 1331
HpySE526I ACGT 5 cut(s) 96, 344, 711, 899, 920
Hsp92II CATG 6 cut(s) 14, 124, 594, 944, 961, 1377
HspAI GCGC 2 cut(s) 8, 911
Kzo9I GATC 9 cut(s) 320, 382, 424, 558, 894, 1009, 1018, 1030, 1087
LmnI GCTCC 5 cut(s) 239, 517, 836, 961, 1051
Lsp1109I GCAGC 7 cut(s) 257, 309, 647, 655, 920, 976, 1039
LweI GCATC 1 cut(s) 232
MaeI CTAG 3 cut(s) 386, 465, 1121
MaeII ACGT 5 cut(s) 96, 344, 711, 899, 920
MalI GATC 9 cut(s) 322, 384, 426, 560, 896, 1011, 1020, 1032, 1089
MbiI CCGCTC 2 cut(s) 30, 1046
MboI GATC 9 cut(s) 320, 382, 424, 558, 894, 1009, 1018, 1030, 1087
MflI RGATCY 2 cut(s) 320, 382
MhlI GDGCHC 3 cut(s) 825, 833, 879
MlsI TGGCCA 1 cut(s) 932
MluCI AATT 7 cut(s) 166, 175, 352, 483, 502, 607, 1209
MluNI TGGCCA 1 cut(s) 932
MlyI GAGTC 1 cut(s) 260
Mox20I TGGCCA 1 cut(s) 932
Mph1103I ATGCAT 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 483
MscI TGGCCA 1 cut(s) 932
MseI TTAA 5 cut(s) 131, 398, 606, 654, 1233
Msp20I TGGCCA 1 cut(s) 932
MspA1I CMGCKG 4 cut(s) 248, 300, 1052, 1415
MspCI CTTAAG 1 cut(s) 130
MspI CCGG 4 cut(s) 163, 269, 844, 914
MspR9I CCNGG 1 cut(s) 199
Mva1269I GAATGC 1 cut(s) 587
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 7 cut(s) 27, 168, 591, 837, 1052, 1378, 1387
NcoI CCATGG 1 cut(s) 1373
NdeI CATATG 1 cut(s) 836
NdeII GATC 9 cut(s) 320, 382, 424, 558, 894, 1009, 1018, 1030, 1087
NlaIII CATG 6 cut(s) 14, 124, 594, 944, 961, 1377
NlaIV GGNNCC 1 cut(s) 513
NsiI ATGCAT 1 cut(s) 122
NspI RCATGY 2 cut(s) 124, 594
NspV TTCGAA 2 cut(s) 487, 579
PaeI GCATGC 1 cut(s) 594
PceI AGGCCT 1 cut(s) 988
PcsI WCGNNNNNNNCGW 3 cut(s) 48, 684, 863
PctI GAATGC 1 cut(s) 587
PdmI GAANNNNTTC 1 cut(s) 483
PfeI GAWTC 3 cut(s) 15, 449, 1288
PflMI CCANNNNNTGG 1 cut(s) 66
PfoI TCCNGGA 1 cut(s) 197
PkrI GCNGC 9 cut(s) 32, 247, 299, 662, 670, 910, 966, 1054, 1414
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 197
PspFI CCCAGC 1 cut(s) 59
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 513
PspPI GGNCC 2 cut(s) 636, 782
PstNI CAGNNNCTG 1 cut(s) 1291
PsuI RGATCY 2 cut(s) 320, 382
PvuII CAGCTG 1 cut(s) 1415
RsaI GTAC 2 cut(s) 125, 343
RsaNI GTAC 2 cut(s) 124, 342
SaqAI TTAA 5 cut(s) 131, 398, 606, 654, 1233
SatI GCNGC 9 cut(s) 31, 246, 298, 661, 669, 909, 965, 1053, 1413
Sau3AI GATC 9 cut(s) 320, 382, 424, 558, 894, 1009, 1018, 1030, 1087
Sau96I GGNCC 2 cut(s) 636, 782
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 3 cut(s) 825, 833, 879
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 1 cut(s) 1131
SfuI TTCGAA 2 cut(s) 487, 579
SmlI CTYRAG 4 cut(s) 130, 325, 751, 1022
SmoI CTYRAG 4 cut(s) 130, 325, 751, 1022
SphI GCATGC 1 cut(s) 594
Sse9I AATT 7 cut(s) 166, 175, 352, 483, 502, 607, 1209
SseBI AGGCCT 1 cut(s) 988
SspMI CTAG 3 cut(s) 386, 465, 1121
StuI AGGCCT 1 cut(s) 988
StyD4I CCNGG 1 cut(s) 197
StyI CCWWGG 2 cut(s) 621, 1373
TaaI ACNGT 4 cut(s) 421, 762, 1149, 1310
TaiI ACGT 5 cut(s) 99, 347, 714, 902, 923
TasI AATT 7 cut(s) 166, 175, 352, 483, 502, 607, 1209
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 3 cut(s) 15, 449, 1288
Tru1I TTAA 5 cut(s) 131, 398, 606, 654, 1233
Tru9I TTAA 5 cut(s) 131, 398, 606, 654, 1233
TscAI CASTG 1 cut(s) 1279
TseI GCWGC 8 cut(s) 245, 297, 660, 668, 908, 964, 1052, 1412
TspDTI ATGAA 3 cut(s) 512, 989, 1314
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 1 cut(s) 1279
Van91I CCANNNNNTGG 1 cut(s) 66
Vha464I CTTAAG 1 cut(s) 130
VneI GTGCAC 1 cut(s) 821
XapI RAATTY 1 cut(s) 483
XceI RCATGY 2 cut(s) 124, 594
XcmI CCANNNNNNNNNTGG 1 cut(s) 776
XmiI GTMKAC 2 cut(s) 537, 1130
XmnI GAANNNNTTC 1 cut(s) 483
XspI CTAG 3 cut(s) 386, 465, 1121
Zsp2I ATGCAT 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.