Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011161

Physical Location & Seq

Genomic Coordinates Reverse (-)

403100 .. 404456

Gene Structure 1357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCCGCGGAAGAAGCGACGGAGTTCTACCTGAGATACTATGTCGGTCACAAAGGGAAATTTGGACACGAGTTCCTGGAGTTCGAGTTTAGAGAGGACGGTAAGCTCCGTTACGCCAATAACTCTAACTACAAGAACGATACTATTATCCGCAAGGAGGTATTTCTCACCCCCGCCGTGCTCAAGGAATGCAAGCGTATCGTCTCCGAGAGCGAGATTCTGAAAGAAGACGATAACAATTGGCCGGAACCTGACCGTGTTGGAAAGCAAGAGCTCGAGATCGTCTTGGGTAATGAGCATATCTCATTCGCTACATCTAAGATTGGATCTCTTGTTGATTGCCAGAGCAGTAATGATCCTGAAGGACTTCGCATCTTCTACTATCTTGTTCAGGACTTGAAATGTCTTGTTTTTTCGCTCATCTCTCTGCACTTCAAAATCAAGCCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009893 GO:0009987 GO:0010154 GO:0010183 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016604 GO:0016607 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035145 GO:0040011 GO:0042221 GO:0042330 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0046483 GO:0048316 GO:0048518 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050789 GO:0050896 GO:0050918 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

Mago_nashi

Protein Analysis

150

Amino Acids

17.46

Weight (kDa)

5.44

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mago_nashi	PF02792	9 - 150	3.2e-78	Mago nashi protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02140
fragaria_vesca	FvH4_7g10360 FvH4_7g10360
malus_domestica	MD00G1129300.v1.1 MD07G1109700.v1.1
prunus_persica	Prupe.2G133100_v2.0.a1
pyrus_communis	pycom07g09420 pycom07g09430 pycom12646g00070
rosa_chinensis	RchiOBHm_Chr1g0348061
rosa_laevigata	RLG00000028694
rosa_multiflora	Rmu_sc0000253.1_g000002
rosa_roxburghii	Rroxscaffold_4G00307280
rosa_rugosa	Rorug01G0191400 Rorug01G0191500
rosa_samantha	Rh1AG209600 Rh1BG175300 Rh1CG194000 Rh1DG204900
rosa_wichuraiana	Rw1G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	8
AciI	CCGC	4 cut(s)	6, 8, 151, 174
AclWI	GGATC	2 cut(s)	334, 350
AcoI	YGGCCR	2 cut(s)	3, 242
AcsI	RAATTY	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	381
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	400, 436
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	2 cut(s)	106, 274
AluI	AGCT	2 cut(s)	106, 274
Alw21I	GWGCWC	2 cut(s)	183, 276
Alw26I	GTCTC	1 cut(s)	208
AlwI	GGATC	2 cut(s)	334, 350
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	2 cut(s)	3, 242
ApoI	RAATTY	1 cut(s)	59
Asp700I	GAANNNNTTC	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	276
BauI	CACGAG	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	2 cut(s)	183, 276
BceAI	ACGGC	1 cut(s)	161
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BciT130I	CCWGG	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	451
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	77
BmeT110I	CYCGRG	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	234
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpmI	CTGGAG	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	6
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	6
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMII	CTCAG	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	413
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	2 cut(s)	5, 244
BsiHKAI	GWGCWC	2 cut(s)	183, 276
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	208
BsmBI	CGTCTC	1 cut(s)	208
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	5, 244
BsoBI	CYCGRG	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	183, 276
Bsp143I	GATC	3 cut(s)	279, 326, 355
BspACI	CCGC	4 cut(s)	6, 8, 151, 174
BspANI	GGCC	2 cut(s)	5, 244
BspCNI	CTCAG	1 cut(s)	24
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	1 cut(s)	249
BspPI	GGATC	2 cut(s)	334, 350
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	3 cut(s)	279, 326, 355
BssSI	CACGAG	1 cut(s)	68
Bst2BI	CACGAG	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	101, 257
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	32, 318
BstDSI	CCRYGG	1 cut(s)	6
BstFNI	CGCG	1 cut(s)	8
BstKTI	GATC	3 cut(s)	282, 329, 358
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	3 cut(s)	279, 326, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	75
BstUI	CGCG	1 cut(s)	8
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	5, 244
BtgI	CCRYGG	1 cut(s)	6
Cac8I	GCNNGC	1 cut(s)	194
Cfr42I	CCGCGG	1 cut(s)	9
CviJI	RGCY	5 cut(s)	5, 106, 244, 274, 445
CviKI_1	RGCY	5 cut(s)	5, 106, 244, 274, 445
DdeI	CTNAG	2 cut(s)	32, 318
DpnI	GATC	3 cut(s)	281, 328, 357
DpnII	GATC	3 cut(s)	279, 326, 355
EaeI	YGGCCR	2 cut(s)	3, 242
Ecl136II	GAGCTC	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	276
Eco53kI	GAGCTC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	275
EcoICRI	GAGCTC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	276
Esp3I	CGTCTC	1 cut(s)	208
FaiI	YATR	2 cut(s)	42, 300
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	451
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	98
HaeIII	GGCC	2 cut(s)	5, 244
HapII	CCGG	1 cut(s)	245
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	208, 222
Hpy188III	TCNNGA	3 cut(s)	277, 359, 392
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	2 cut(s)	101, 257
HpyCH4V	TGCA	2 cut(s)	192, 430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	2 cut(s)	32, 318
KspI	CCGCGG	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	279, 326, 355
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	8 cut(s)	44, 62, 89, 258, 264, 356, 372, 377
LweI	GCATC	1 cut(s)	381
MaeI	CTAG	1 cut(s)	451
MaeIII	GTNAC	2 cut(s)	47, 110
MalI	GATC	3 cut(s)	281, 328, 357
MboI	GATC	3 cut(s)	279, 326, 355
MboII	GAAGA	3 cut(s)	23, 239, 367
MfeI	CAATTG	1 cut(s)	238
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	2 cut(s)	183, 276
MluCI	AATT	2 cut(s)	59, 238
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	2 cut(s)	88, 151
MroXI	GAANNNNTTC	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	238
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	3 cut(s)	279, 326, 355
NlaIV	GGNNCC	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	47
PaeR7I	CTCGAG	1 cut(s)	275
PctI	GAATGC	1 cut(s)	194
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	217
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	1 cut(s)	7
Psp124BI	GAGCTC	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	326
SacI	GAGCTC	1 cut(s)	276
SacII	CCGCGG	1 cut(s)	9
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	279, 326, 355
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	2 cut(s)	183, 276
SetI	ASST	5 cut(s)	33, 108, 162, 253, 276
SfaNI	GCATC	1 cut(s)	381
Sfr274I	CTCGAG	1 cut(s)	275
Sfr303I	CCGCGG	1 cut(s)	9
SgrBI	CCGCGG	1 cut(s)	9
SlaI	CTCGAG	1 cut(s)	275
SmlI	CTYRAG	2 cut(s)	182, 275
SmoI	CTYRAG	2 cut(s)	182, 275
Sse9I	AATT	2 cut(s)	59, 238
SsiI	CCGC	4 cut(s)	6, 8, 151, 174
SspMI	CTAG	1 cut(s)	451
SstI	GAGCTC	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	101, 257
TaqI	TCGA	2 cut(s)	84, 276
TaqII	GACCGA	1 cut(s)	35
TasI	AATT	2 cut(s)	59, 238
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	47
TspGWI	ACGGA	2 cut(s)	35, 98
XapI	RAATTY	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	366
XspI	CTAG	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.