Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011161

Physical Location & Seq

Genomic Coordinates Forward (+)

12610827 .. 12614064

Gene Structure 3238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1109700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCCGGAGAGGAAGAGAACAGTGAGTTCTACCTTAGGTACTACGTCGGCCACAAGGGCAAGTTCGGCCACGAGTTCCTGGAGTTCGAGTTTCGACCCGACGGCAAGCTCCGCTACGCCAACAATTCCAACTACAAGAACGACACTATCATCCGCAAGGAGGTCTACGTCACTCCCGCCGTCGTCAGGGAGTGCCGTCGTATCATCTCGGAGAGTGAGATCATGAAGGAAGATGACGTGAACTGGCCAGAACCTGACCGTGTTGGGCGGCAGGAGCTTGAAATTGTAATGGGGAATGAGCATATCTCCTTCACTACTTCAAAGATCGGATCGCTTGTTGATGTCCAGAGCAGTAAGGATCCTGAAGGTCTTCGTATCTTTTATTATCTCGTTCAGGATCTGAAGTGCTTTGTGTTCTCTCTCATCTCCCTTCACTTCAAGATCAAGCCGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009893 GO:0009987 GO:0010154 GO:0010183 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016604 GO:0016607 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035145 GO:0040011 GO:0042221 GO:0042330 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0046483 GO:0048316 GO:0048518 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050789 GO:0050896 GO:0050918 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

Mago_nashi

Protein Analysis

152

Amino Acids

17.75

Weight (kDa)

5.63

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mago_nashi	PF02792	10 - 151	3.1e-79	Mago nashi protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0011161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02140
fragaria_vesca	FvH4_7g10360 FvH4_7g10360
malus_domestica	MD00G1129300.v1.1 MD07G1109700.v1.1
prunus_persica	Prupe.2G133100_v2.0.a1
pyrus_communis	pycom07g09420 pycom07g09430 pycom12646g00070
rosa_chinensis	RchiOBHm_Chr1g0348061
rosa_laevigata	RLG00000028694
rosa_multiflora	Rmu_sc0000253.1_g000002
rosa_roxburghii	Rroxscaffold_4G00307280
rosa_rugosa	Rorug01G0191400 Rorug01G0191500
rosa_samantha	Rh1AG209600 Rh1BG175300 Rh1CG194000 Rh1DG204900
rosa_wichuraiana	Rw1G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	4 cut(s)	112, 154, 177, 268
AclWI	GGATC	4 cut(s)	337, 353, 366, 405
AcoI	YGGCCR	4 cut(s)	3, 49, 67, 245
AcuI	CTGAAG	2 cut(s)	384, 422
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	160, 186
AgsI	TTSAA	3 cut(s)	281, 321, 439
AjiI	CACGTC	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	2 cut(s)	109, 277
AluI	AGCT	2 cut(s)	109, 277
AlwI	GGATC	4 cut(s)	337, 353, 366, 405
AlwNI	CAGNNNCTG	2 cut(s)	254, 400
AoxI	GGCC	4 cut(s)	3, 49, 67, 245
Asp700I	GAANNNNTTC	1 cut(s)	369
AxyI	CCTNAGG	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	247
BamHI	GGATCC	1 cut(s)	358
BauI	CACGAG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	362
BceAI	ACGGC	3 cut(s)	118, 164, 180
BciT130I	CCWGG	1 cut(s)	80
BglI	GCCNNNNNGGC	1 cut(s)	57
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	1 cut(s)	80
BmgBI	CACGTC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	362
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpmI	CTGGAG	1 cut(s)	101
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 186
Bse1I	ACTGG	1 cut(s)	248
Bse21I	CCTNAGG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	160, 186
BseNI	ACTGG	1 cut(s)	248
BshFI	GGCC	4 cut(s)	5, 51, 69, 247
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	2 cut(s)	160, 186
BsnI	GGCC	4 cut(s)	5, 51, 69, 247
Bsp143I	GATC	6 cut(s)	219, 324, 329, 358, 397, 441
BspACI	CCGC	4 cut(s)	112, 154, 177, 268
BspANI	GGCC	4 cut(s)	5, 51, 69, 247
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	360
BspPI	GGATC	4 cut(s)	337, 353, 366, 405
BsrI	ACTGG	1 cut(s)	248
BssMI	GATC	6 cut(s)	219, 324, 329, 358, 397, 441
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	2 cut(s)	23, 260
Bst6I	CTCTTC	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	150
BstKTI	GATC	6 cut(s)	222, 327, 332, 361, 400, 444
BstMBI	GATC	6 cut(s)	219, 324, 329, 358, 397, 441
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 66, 111, 274
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	2 cut(s)	358, 397
BstYI	RGATCY	2 cut(s)	358, 397
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	4 cut(s)	5, 51, 69, 247
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	107
CaiI	CAGNNNCTG	2 cut(s)	254, 400
CciI	TCATGA	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	7 cut(s)	5, 51, 69, 109, 247, 277, 448
CviKI_1	RGCY	7 cut(s)	5, 51, 69, 109, 247, 277, 448
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	6 cut(s)	221, 326, 331, 360, 399, 443
DpnII	GATC	6 cut(s)	219, 324, 329, 358, 397, 441
EaeI	YGGCCR	4 cut(s)	3, 49, 67, 245
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco57I	CTGAAG	2 cut(s)	384, 422
Eco81I	CCTNAGG	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	78
FaeI	CATG	1 cut(s)	226
FaiI	YATR	3 cut(s)	224, 303, 454
FatI	CATG	1 cut(s)	222
FauI	CCCGC	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	269
GluI	GCNGC	1 cut(s)	269
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	4 cut(s)	5, 51, 69, 247
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	1 cut(s)	226
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	2 cut(s)	166, 241
Hpy188I	TCNGA	3 cut(s)	211, 329, 402
Hpy188III	TCNNGA	5 cut(s)	223, 346, 362, 395, 439
Hpy8I	GTNNAC	2 cut(s)	166, 241
Hpy99I	CGWCG	4 cut(s)	50, 104, 185, 201
HpyAV	CCTTC	4 cut(s)	220, 319, 359, 440
HpyCH4III	ACNGT	2 cut(s)	23, 260
HpyCH4IV	ACGT	3 cut(s)	45, 168, 237
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 66, 111, 274
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	3 cut(s)	45, 168, 237
Hsp92II	CATG	1 cut(s)	226
Kzo9I	GATC	6 cut(s)	219, 324, 329, 358, 397, 441
LmnI	GCTCC	2 cut(s)	114, 274
MaeII	ACGT	3 cut(s)	45, 168, 237
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	6 cut(s)	221, 326, 331, 360, 399, 443
MboI	GATC	6 cut(s)	219, 324, 329, 358, 397, 441
MboII	GAAGA	3 cut(s)	26, 242, 362
MflI	RGATCY	2 cut(s)	358, 397
MlsI	TGGCCA	1 cut(s)	247
MluCI	AATT	2 cut(s)	124, 282
MluNI	TGGCCA	1 cut(s)	247
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	2 cut(s)	4, 154
Mox20I	TGGCCA	1 cut(s)	247
MroXI	GAANNNNTTC	1 cut(s)	369
MscI	TGGCCA	1 cut(s)	247
Msp20I	TGGCCA	1 cut(s)	247
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	4 cut(s)	57, 66, 111, 274
NdeII	GATC	6 cut(s)	219, 324, 329, 358, 397, 441
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	1 cut(s)	360
NmuCI	GTSAC	1 cut(s)	169
PagI	TCATGA	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	369
PfoI	TCCNGGA	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	360
PstNI	CAGNNNCTG	2 cut(s)	254, 400
PsuI	RGATCY	2 cut(s)	358, 397
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	6 cut(s)	219, 324, 329, 358, 397, 441
ScrFI	CCNGG	1 cut(s)	80
Sse9I	AATT	2 cut(s)	124, 282
SsiI	CCGC	4 cut(s)	112, 154, 177, 268
StyD4I	CCNGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	23, 260
TaiI	ACGT	3 cut(s)	48, 171, 240
TaqI	TCGA	2 cut(s)	87, 94
TasI	AATT	2 cut(s)	124, 282
TauI	GCSGC	1 cut(s)	271
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.