Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0011161

Physical Location & Seq

Genomic Coordinates Reverse (-)

26439130 .. 26441870

Gene Structure 2741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028694

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCCGGAGAAGAAGAGAACAGCGAGTTCTACCTGAGGTACTACGTCGGCCACAAGGGGAAGTTCGGGCACGAGTTCTTGGAGTTCGAGTTTCGACCCGACGGGAAGCTCCGATACGCCAACAACTCCAACTACAAGAACGACACCATCATCCGCAAGGAGGTCTACGTCACCCCCGCCGTCGTCAGAGAGTGCCGCCGTATCATTACTGAGAGCGAGATCATGAAAGAGGATGATCAAAACTGGCCGGAACCTGACCGTATTGGGCGGCAGGAGCTTGAGATTGTAATGGGGAATGAGCATATCTCCTTCACTACTTCAAAGATTGGATCCCTCGTTGATGTCCAGGGCAGTAAAGATCCTGAAGGTCTTCGCATCTTTTATTATCTTGTTCAGGATCTGAAGTGCTTTGTATTCTCTCTCATCTCGCTCCACTTCAAGATCAAGCCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009893 GO:0009987 GO:0010154 GO:0010183 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016604 GO:0016607 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035145 GO:0040011 GO:0042221 GO:0042330 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0046483 GO:0048316 GO:0048518 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050789 GO:0050896 GO:0050918 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

Mago_nashi

Protein Analysis

152

Amino Acids

17.78

Weight (kDa)

5.63

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mago_nashi	PF02792	10 - 151	3.8e-79	Mago nashi protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0011161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02140
fragaria_vesca	FvH4_7g10360 FvH4_7g10360
malus_domestica	MD00G1129300.v1.1 MD07G1109700.v1.1
prunus_persica	Prupe.2G133100_v2.0.a1
pyrus_communis	pycom07g09420 pycom07g09430 pycom12646g00070
rosa_chinensis	RchiOBHm_Chr1g0348061
rosa_laevigata	RLG00000028694
rosa_multiflora	Rmu_sc0000253.1_g000002
rosa_roxburghii	Rroxscaffold_4G00307280
rosa_rugosa	Rorug01G0191400 Rorug01G0191500
rosa_samantha	Rh1AG209600 Rh1BG175300 Rh1CG194000 Rh1DG204900
rosa_wichuraiana	Rw1G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	4 cut(s)	154, 177, 196, 268
AclWI	GGATC	4 cut(s)	324, 337, 353, 405
AcoI	YGGCCR	3 cut(s)	3, 49, 245
AcuI	CTGAAG	2 cut(s)	384, 422
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	321, 439
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	2 cut(s)	109, 277
AluI	AGCT	2 cut(s)	109, 277
AlwI	GGATC	4 cut(s)	324, 337, 353, 405
AlwNI	CAGNNNCTG	1 cut(s)	400
AoxI	GGCC	3 cut(s)	3, 49, 245
Asp700I	GAANNNNTTC	1 cut(s)	369
AsuHPI	GGTGA	1 cut(s)	163
AxyI	CCTNAGG	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	72
BamHI	GGATCC	1 cut(s)	329
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BauI	CACGAG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	362
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	2 cut(s)	164, 183
BciT130I	CCWGG	1 cut(s)	347
BclI	TGATCA	1 cut(s)	235
BisI	GCNGC	2 cut(s)	196, 269
BlsI	GCNGC	2 cut(s)	197, 270
Bme1390I	CCNGG	1 cut(s)	347
BmiI	GGNNCC	2 cut(s)	252, 331
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	1 cut(s)	384
BpiI	GAAGAC	1 cut(s)	362
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpuEI	CTTGAG	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	346
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	248
Bse21I	CCTNAGG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	2 cut(s)	150, 238
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	2 cut(s)	26, 201
BseNI	ACTGG	1 cut(s)	248
BseSI	GKGCMC	1 cut(s)	72
BshFI	GGCC	3 cut(s)	5, 51, 247
BsiSI	CCGG	2 cut(s)	6, 248
BslI	CCNNNNNNNGG	1 cut(s)	160
BsnI	GGCC	3 cut(s)	5, 51, 247
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	6 cut(s)	219, 235, 329, 358, 397, 441
BspACI	CCGC	4 cut(s)	154, 177, 196, 268
BspANI	GGCC	3 cut(s)	5, 51, 247
BspCNI	CTCAG	2 cut(s)	27, 202
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	252, 331
BspPI	GGATC	4 cut(s)	324, 337, 353, 405
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	6 cut(s)	219, 235, 329, 358, 397, 441
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	9
BstDEI	CTNAG	2 cut(s)	35, 210
BstF5I	GGATG	2 cut(s)	150, 238
BstKTI	GATC	6 cut(s)	222, 238, 332, 361, 400, 444
BstMBI	GATC	6 cut(s)	219, 235, 329, 358, 397, 441
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNI	CCWGG	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	72
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	3 cut(s)	329, 358, 397
BstYI	RGATCY	3 cut(s)	329, 358, 397
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	5, 51, 247
BtsCI	GGATG	2 cut(s)	150, 238
CaiI	CAGNNNCTG	1 cut(s)	400
CciI	TCATGA	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	6 cut(s)	5, 51, 109, 247, 277, 448
CviKI_1	RGCY	6 cut(s)	5, 51, 109, 247, 277, 448
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	35, 210
DpnI	GATC	6 cut(s)	221, 237, 331, 360, 399, 443
DpnII	GATC	6 cut(s)	219, 235, 329, 358, 397, 441
EaeI	YGGCCR	3 cut(s)	3, 49, 245
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco57I	CTGAAG	2 cut(s)	384, 422
Eco81I	CCTNAGG	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	345
FaeI	CATG	1 cut(s)	226
FaiI	YATR	4 cut(s)	224, 303, 452, 454
FatI	CATG	1 cut(s)	222
FauI	CCCGC	1 cut(s)	184
FbaI	TGATCA	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	196, 269
FokI	GGATG	2 cut(s)	137, 245
Fsp4HI	GCNGC	2 cut(s)	196, 269
GluI	GCNGC	2 cut(s)	196, 269
HaeIII	GGCC	3 cut(s)	5, 51, 247
HapII	CCGG	2 cut(s)	6, 248
Hin1II	CATG	1 cut(s)	226
HpaII	CCGG	2 cut(s)	6, 248
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	3 cut(s)	113, 188, 402
Hpy188III	TCNNGA	4 cut(s)	223, 362, 395, 439
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	3 cut(s)	50, 104, 185
HpyAV	CCTTC	2 cut(s)	319, 359
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	2 cut(s)	45, 168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	2 cut(s)	35, 210
HpySE526I	ACGT	2 cut(s)	45, 168
Hsp92II	CATG	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	6 cut(s)	219, 235, 329, 358, 397, 441
LmnI	GCTCC	3 cut(s)	114, 274, 435
LweI	GCATC	1 cut(s)	384
MaeII	ACGT	2 cut(s)	45, 168
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	6 cut(s)	221, 237, 331, 360, 399, 443
MboI	GATC	6 cut(s)	219, 235, 329, 358, 397, 441
MboII	GAAGA	3 cut(s)	23, 26, 362
MflI	RGATCY	3 cut(s)	329, 358, 397
MhlI	GDGCHC	1 cut(s)	72
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	4 cut(s)	30, 154, 223, 344
MroXI	GAANNNNTTC	1 cut(s)	369
MspI	CCGG	2 cut(s)	6, 248
MspR9I	CCNGG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	274
NdeII	GATC	6 cut(s)	219, 235, 329, 358, 397, 441
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	2 cut(s)	252, 331
NmuCI	GTSAC	1 cut(s)	169
PagI	TCATGA	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	369
PkrI	GCNGC	2 cut(s)	197, 270
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	252, 331
PstNI	CAGNNNCTG	1 cut(s)	400
PsuI	RGATCY	3 cut(s)	329, 358, 397
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SatI	GCNGC	2 cut(s)	196, 269
Sau3AI	GATC	6 cut(s)	219, 235, 329, 358, 397, 441
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	9 cut(s)	36, 41, 48, 111, 165, 171, 256, 279, 370
SfaNI	GCATC	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
SsiI	CCGC	4 cut(s)	154, 177, 196, 268
StyD4I	CCNGG	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	2 cut(s)	48, 171
TaqI	TCGA	2 cut(s)	87, 94
TauI	GCSGC	2 cut(s)	198, 271
TseFI	GTSAC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.