Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0011161

Physical Location & Seq

Genomic Coordinates Forward (+)

38627509 .. 38630780

Gene Structure 3272 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G017480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCCGATAAGAACGAGCCCAACAAGAGGCAATAAATATTCATTCCCACCCAAATCCCCCACCTATTTACCTAAATCCCAAACCCTCCTCCTTCCTTCGCTCCATCGTTTCAGAGAAGCAGAGAGAGAGAGAGCCATGGCCGGAGAAGAAGAGAACAGCGAGTTCTACCTGAGGTACTACGTCGGCCACAAGGGGAAGTTCGGGCACGAGTTCTTGGAGTTCGAGTTTCGACCCGACGGGAAGCTCCGATACGCCAACAACTCCAACTACAAGAACGACACCATCATCCGCAAGGAGGTCTACGTCACCCCCGCCGTCGTCAGAGAGTGTCGCCGTATCATTACTGAGAGCGAGATCATGAAAGAGGATGATCAGAACTGGCCGGAACCTGACCGTATTGGGCGGCAGGAGCTTGAAATTGTAATAGGGAATGAGCATATCTCCTTCACTACTTCAAAGATTGGATCCCTCGTTGATGTCCAGGGCAGTAAAGATCCTGAAGGTCTTCGCATCTTTTATTATCTTGTTCAGGATCTGAAGTGCTTTGTGTTCTCTCTCATCTCGCTCCACTTCAAGATCAAGCCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009893 GO:0009987 GO:0010154 GO:0010183 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016604 GO:0016607 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035145 GO:0040011 GO:0042221 GO:0042330 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0046483 GO:0048316 GO:0048518 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050789 GO:0050896 GO:0050918 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

Mago_nashi

Protein Analysis

196

Amino Acids

23.0

Weight (kDa)

8.43

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mago_nashi	PF02792	55 - 196	1.9e-78	Mago nashi protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02140
fragaria_vesca	FvH4_7g10360 FvH4_7g10360
malus_domestica	MD00G1129300.v1.1 MD07G1109700.v1.1
prunus_persica	Prupe.2G133100_v2.0.a1
pyrus_communis	pycom07g09420 pycom07g09430 pycom12646g00070
rosa_chinensis	RchiOBHm_Chr1g0348061
rosa_laevigata	RLG00000028694
rosa_multiflora	Rmu_sc0000253.1_g000002
rosa_roxburghii	Rroxscaffold_4G00307280
rosa_rugosa	Rorug01G0191400 Rorug01G0191500
rosa_samantha	Rh1AG209600 Rh1BG175300 Rh1CG194000 Rh1DG204900
rosa_wichuraiana	Rw1G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	300
AciI	CCGC	3 cut(s)	289, 312, 403
AclWI	GGATC	4 cut(s)	459, 472, 488, 540
AcoI	YGGCCR	3 cut(s)	138, 184, 380
AcuI	CTGAAG	2 cut(s)	519, 557
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	26, 295
AgsI	TTSAA	3 cut(s)	416, 456, 574
AjnI	CCWGG	1 cut(s)	480
AluBI	AGCT	2 cut(s)	244, 412
AluI	AGCT	2 cut(s)	244, 412
AlwI	GGATC	4 cut(s)	459, 472, 488, 540
AlwNI	CAGNNNCTG	1 cut(s)	535
AoxI	GGCC	3 cut(s)	138, 184, 380
Asp700I	GAANNNNTTC	1 cut(s)	504
AsuHPI	GGTGA	1 cut(s)	298
AxyI	CCTNAGG	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	207
BamHI	GGATCC	1 cut(s)	464
BanII	GRGCYC	1 cut(s)	20
BarI	GAAGNNNNNNTAC	2 cut(s)	233, 265
BauI	CACGAG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	497
BccI	CCATC	2 cut(s)	111, 290
BceAI	ACGGC	2 cut(s)	299, 318
BciT130I	CCWGG	1 cut(s)	482
BclI	TGATCA	1 cut(s)	370
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
Bme1390I	CCNGG	1 cut(s)	482
BmiI	GGNNCC	2 cut(s)	387, 466
BmrFI	CCNGG	1 cut(s)	482
BmsI	GCATC	1 cut(s)	519
BpiI	GAAGAC	1 cut(s)	497
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
BsaJI	CCNNGG	2 cut(s)	135, 481
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 295
Bse1I	ACTGG	1 cut(s)	383
Bse21I	CCTNAGG	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	2 cut(s)	135, 481
BseGI	GGATG	2 cut(s)	285, 373
BseLI	CCNNNNNNNGG	2 cut(s)	26, 295
BseMII	CTCAG	2 cut(s)	161, 336
BseNI	ACTGG	1 cut(s)	383
BseRI	GAGGAG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	207
BshFI	GGCC	3 cut(s)	140, 186, 382
BsiSI	CCGG	2 cut(s)	141, 383
BslI	CCNNNNNNNGG	2 cut(s)	26, 295
BsnI	GGCC	3 cut(s)	140, 186, 382
Bsp1286I	GDGCHC	2 cut(s)	20, 207
Bsp143I	GATC	6 cut(s)	354, 370, 464, 493, 532, 576
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	3 cut(s)	289, 312, 403
BspANI	GGCC	3 cut(s)	140, 186, 382
BspCNI	CTCAG	2 cut(s)	162, 337
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	2 cut(s)	387, 466
BspPI	GGATC	4 cut(s)	459, 472, 488, 540
BsrI	ACTGG	1 cut(s)	383
BssECI	CCNNGG	2 cut(s)	135, 481
BssMI	GATC	6 cut(s)	354, 370, 464, 493, 532, 576
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	1 cut(s)	395
Bst6I	CTCTTC	1 cut(s)	144
BstDEI	CTNAG	2 cut(s)	170, 345
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	285, 373
BstKTI	GATC	6 cut(s)	357, 373, 467, 496, 535, 579
BstMBI	GATC	6 cut(s)	354, 370, 464, 493, 532, 576
BstMWI	GCNNNNNNNGC	1 cut(s)	409
BstNI	CCWGG	1 cut(s)	482
BstSCI	CCNGG	1 cut(s)	480
BstSLI	GKGCMC	1 cut(s)	207
BstV2I	GAAGAC	1 cut(s)	497
BstX2I	RGATCY	3 cut(s)	464, 493, 532
BstYI	RGATCY	3 cut(s)	464, 493, 532
Bsu36I	CCTNAGG	1 cut(s)	170
BsuRI	GGCC	3 cut(s)	140, 186, 382
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	285, 373
CaiI	CAGNNNCTG	1 cut(s)	535
CciI	TCATGA	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	2 cut(s)	136, 358
CviJI	RGCY	8 cut(s)	18, 134, 140, 186, 244, 382, 412, 583
CviKI_1	RGCY	8 cut(s)	18, 134, 140, 186, 244, 382, 412, 583
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	2 cut(s)	170, 345
DpnI	GATC	6 cut(s)	356, 372, 466, 495, 534, 578
DpnII	GATC	6 cut(s)	354, 370, 464, 493, 532, 576
EaeI	YGGCCR	3 cut(s)	138, 184, 380
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	20
Eco57I	CTGAAG	2 cut(s)	519, 557
Eco81I	CCTNAGG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	480
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	139, 361
FaiI	YATR	5 cut(s)	137, 359, 438, 587, 589
FatI	CATG	2 cut(s)	135, 357
FauI	CCCGC	1 cut(s)	319
FbaI	TGATCA	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	2 cut(s)	272, 380
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	404
GluI	GCNGC	1 cut(s)	404
HaeIII	GGCC	3 cut(s)	140, 186, 382
HapII	CCGG	2 cut(s)	141, 383
Hin1II	CATG	2 cut(s)	139, 361
HpaII	CCGG	2 cut(s)	141, 383
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	5 cut(s)	113, 248, 323, 375, 537
Hpy188III	TCNNGA	4 cut(s)	358, 497, 530, 574
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	3 cut(s)	185, 239, 320
HpyAV	CCTTC	4 cut(s)	101, 105, 454, 494
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	2 cut(s)	180, 303
HpyF10VI	GCNNNNNNNGC	1 cut(s)	409
HpyF3I	CTNAG	2 cut(s)	170, 345
HpySE526I	ACGT	2 cut(s)	180, 303
Hsp92II	CATG	2 cut(s)	139, 361
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	6 cut(s)	354, 370, 464, 493, 532, 576
LmnI	GCTCC	4 cut(s)	105, 249, 409, 570
LweI	GCATC	1 cut(s)	519
MaeII	ACGT	2 cut(s)	180, 303
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	6 cut(s)	356, 372, 466, 495, 534, 578
MboI	GATC	6 cut(s)	354, 370, 464, 493, 532, 576
MboII	GAAGA	3 cut(s)	158, 161, 497
MflI	RGATCY	3 cut(s)	464, 493, 532
MhlI	GDGCHC	2 cut(s)	20, 207
MluCI	AATT	1 cut(s)	417
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	7 cut(s)	20, 95, 98, 165, 289, 358, 479
MroXI	GAANNNNTTC	1 cut(s)	504
MspI	CCGG	2 cut(s)	141, 383
MspR9I	CCNGG	1 cut(s)	482
MvaI	CCWGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	1 cut(s)	409
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	6 cut(s)	354, 370, 464, 493, 532, 576
NlaIII	CATG	2 cut(s)	139, 361
NlaIV	GGNNCC	2 cut(s)	387, 466
NmuCI	GTSAC	1 cut(s)	304
PagI	TCATGA	1 cut(s)	357
PdmI	GAANNNNTTC	1 cut(s)	504
PkrI	GCNGC	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	2 cut(s)	387, 466
PstNI	CAGNNNCTG	1 cut(s)	535
PsuI	RGATCY	3 cut(s)	464, 493, 532
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	6 cut(s)	354, 370, 464, 493, 532, 576
ScrFI	CCNGG	1 cut(s)	482
SduI	GDGCHC	2 cut(s)	20, 207
SfaNI	GCATC	1 cut(s)	519
Sse9I	AATT	1 cut(s)	417
SsiI	CCGC	3 cut(s)	289, 312, 403
SspI	AATATT	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	480
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	2 cut(s)	183, 306
TaqI	TCGA	2 cut(s)	222, 229
TasI	AATT	1 cut(s)	417
TauI	GCSGC	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	30, 374
XmiI	GTMKAC	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.