Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000253.1

Orthogroup ID

OG0011161

Physical Location & Seq

Genomic Coordinates Forward (+)

8808 .. 9569

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000253.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

atgaaagaggatgatcagaactggccggaacctgaccgtattgggcggcaggagcttgagattgtaatggggaatgagcatatctccttcactacttcaaagattggatccctcgttgatgtccagggaagtaaagatcctgaaggtcttcgcatcttttattatcttgttcaggatctgaagtgctttgtgttctctctcatctcgctccacttcaagatcaagcctatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009893 GO:0009987 GO:0010154 GO:0010183 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016604 GO:0016607 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035145 GO:0040011 GO:0042221 GO:0042330 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0046483 GO:0048316 GO:0048518 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050789 GO:0050896 GO:0050918 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

Mago_nashi

Protein Analysis

77

Amino Acids

8.94

Weight (kDa)

5.21

Isoelectric Point (pI)

26.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02140
fragaria_vesca	FvH4_7g10360 FvH4_7g10360
malus_domestica	MD00G1129300.v1.1 MD07G1109700.v1.1
prunus_persica	Prupe.2G133100_v2.0.a1
pyrus_communis	pycom07g09420 pycom07g09430 pycom12646g00070
rosa_chinensis	RchiOBHm_Chr1g0348061
rosa_laevigata	RLG00000028694
rosa_multiflora	Rmu_sc0000253.1_g000002
rosa_roxburghii	Rroxscaffold_4G00307280
rosa_rugosa	Rorug01G0191400 Rorug01G0191500
rosa_samantha	Rh1AG209600 Rh1BG175300 Rh1CG194000 Rh1DG204900
rosa_wichuraiana	Rw1G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	4 cut(s)	102, 115, 131, 183
AcoI	YGGCCR	1 cut(s)	23
AcuI	CTGAAG	2 cut(s)	162, 200
AgsI	TTSAA	2 cut(s)	99, 217
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
AlwI	GGATC	4 cut(s)	102, 115, 131, 183
AlwNI	CAGNNNCTG	1 cut(s)	178
AoxI	GGCC	1 cut(s)	23
Asp700I	GAANNNNTTC	1 cut(s)	147
BamHI	GGATCC	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	125
BclI	TGATCA	1 cut(s)	13
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme1390I	CCNGG	1 cut(s)	125
BmiI	GGNNCC	2 cut(s)	30, 109
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	140
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpuEI	CTTGAG	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	1 cut(s)	16
BseNI	ACTGG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	26
BsnI	GGCC	1 cut(s)	25
Bsp143I	GATC	5 cut(s)	13, 107, 136, 175, 219
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	30, 109
BspPI	GGATC	4 cut(s)	102, 115, 131, 183
BsrI	ACTGG	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	5 cut(s)	13, 107, 136, 175, 219
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	16
BstKTI	GATC	5 cut(s)	16, 110, 139, 178, 222
BstMBI	GATC	5 cut(s)	13, 107, 136, 175, 219
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	140
BstX2I	RGATCY	3 cut(s)	107, 136, 175
BstYI	RGATCY	3 cut(s)	107, 136, 175
BsuRI	GGCC	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	16
CaiI	CAGNNNCTG	1 cut(s)	178
CviJI	RGCY	3 cut(s)	25, 55, 226
CviKI_1	RGCY	3 cut(s)	25, 55, 226
DpnI	GATC	5 cut(s)	15, 109, 138, 177, 221
DpnII	GATC	5 cut(s)	13, 107, 136, 175, 219
EaeI	YGGCCR	1 cut(s)	23
Eco57I	CTGAAG	2 cut(s)	162, 200
EcoRII	CCWGG	1 cut(s)	123
FaiI	YATR	3 cut(s)	81, 230, 232
FbaI	TGATCA	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	47
GluI	GCNGC	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	25
HapII	CCGG	1 cut(s)	26
HpaII	CCGG	1 cut(s)	26
Hpy188I	TCNGA	2 cut(s)	18, 180
Hpy188III	TCNNGA	3 cut(s)	140, 173, 217
HpyAV	CCTTC	2 cut(s)	97, 137
HpyCH4III	ACNGT	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	5 cut(s)	13, 107, 136, 175, 219
LmnI	GCTCC	2 cut(s)	52, 213
LpnPI	CCDG	8 cut(s)	7, 35, 39, 45, 110, 137, 153, 158
LweI	GCATC	1 cut(s)	162
MalI	GATC	5 cut(s)	15, 109, 138, 177, 221
MboI	GATC	5 cut(s)	13, 107, 136, 175, 219
MboII	GAAGA	1 cut(s)	140
MflI	RGATCY	3 cut(s)	107, 136, 175
MnlI	CCTC	1 cut(s)	122
MroXI	GAANNNNTTC	1 cut(s)	147
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	5 cut(s)	13, 107, 136, 175, 219
NlaIV	GGNNCC	2 cut(s)	30, 109
PdmI	GAANNNNTTC	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	2 cut(s)	30, 109
PstNI	CAGNNNCTG	1 cut(s)	178
PsuI	RGATCY	3 cut(s)	107, 136, 175
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	5 cut(s)	13, 107, 136, 175, 219
ScrFI	CCNGG	1 cut(s)	125
SetI	ASST	3 cut(s)	34, 57, 148
SfaNI	GCATC	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
SsiI	CCGC	1 cut(s)	46
StyD4I	CCNGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	38
TauI	GCSGC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.