Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011161

Physical Location & Seq

Genomic Coordinates Reverse (-)

28437473 .. 28440473

Gene Structure 3001 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00307280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCCGGAGAAGAAGAAAACAGCGAGTTCTACCTGAGGTACTATGTCGGCCACAAGGGGAAGTTCGGGCACGAGTTCTTGGAGTTCGAGTTTCGACCCGACGGGAAGCTCCGATACGCCAACAACTCCAACTACAAGAACGACACCATCATCCGGAAAGAGGTCTACGTCACCCCCGCCGTCGTCAGAGAGTGTCGCCGTATCATTACTGAGAGCGAGATGAGCACTGCACATGAAAGCCACAACATTTACAATGCTTGTGATTGTTATGACTGTCCTATCATGAAAGAGGATGATCAGAACTGGCCGGAACCTGACCGTATTGGGCGGCAGGAACTTGAGATTGTAATAGGGAATGAGCATATCTCCTTCACTACTTCAAAGATTGGATCCCTCGTTGATGTCCAGGGCAGTAAAGATCCTGAAGGTCTTCGCATCTTTTATTATCTTGTTCAGGATCTGAAGTGCTTTGTGTTCTCTCTCATCTCGCTCCACTTCAAGATCAAGCCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009893 GO:0009987 GO:0010154 GO:0010183 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016604 GO:0016607 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035145 GO:0040011 GO:0042221 GO:0042330 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0046483 GO:0048316 GO:0048518 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050789 GO:0050896 GO:0050918 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

Mago_nashi

Protein Analysis

171

Amino Acids

20.02

Weight (kDa)

5.4

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mago_nashi	PF02792	10 - 79	3.4e-32	Mago nashi protein
Mago_nashi	PF02792	92 - 171	2.3e-39	Mago nashi protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02140
fragaria_vesca	FvH4_7g10360 FvH4_7g10360
malus_domestica	MD00G1129300.v1.1 MD07G1109700.v1.1
prunus_persica	Prupe.2G133100_v2.0.a1
pyrus_communis	pycom07g09420 pycom07g09430 pycom12646g00070
rosa_chinensis	RchiOBHm_Chr1g0348061
rosa_laevigata	RLG00000028694
rosa_multiflora	Rmu_sc0000253.1_g000002
rosa_roxburghii	Rroxscaffold_4G00307280
rosa_rugosa	Rorug01G0191400 Rorug01G0191500
rosa_samantha	Rh1AG209600 Rh1BG175300 Rh1CG194000 Rh1DG204900
rosa_wichuraiana	Rw1G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	165
AccIII	TCCGGA	1 cut(s)	153
AciI	CCGC	2 cut(s)	177, 328
AclWI	GGATC	4 cut(s)	384, 397, 413, 465
AcoI	YGGCCR	3 cut(s)	3, 49, 305
AcuI	CTGAAG	2 cut(s)	444, 482
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	153, 160
AgsI	TTSAA	2 cut(s)	381, 499
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	227
AlwI	GGATC	4 cut(s)	384, 397, 413, 465
AlwNI	CAGNNNCTG	1 cut(s)	460
Aor13HI	TCCGGA	1 cut(s)	153
AoxI	GGCC	3 cut(s)	3, 49, 305
Asp700I	GAANNNNTTC	1 cut(s)	429
AsuHPI	GGTGA	1 cut(s)	163
AxyI	CCTNAGG	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	72
BamHI	GGATCC	1 cut(s)	389
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BauI	CACGAG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	227
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	2 cut(s)	164, 183
BciT130I	CCWGG	1 cut(s)	407
BclI	TGATCA	1 cut(s)	295
BisI	GCNGC	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	330
Bme1390I	CCNGG	1 cut(s)	407
BmiI	GGNNCC	2 cut(s)	312, 391
BmrFI	CCNGG	1 cut(s)	407
BmsI	GCATC	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	422
BplI	GAGNNNNNCTC	2 cut(s)	350, 382
BpuEI	CTTGAG	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	406
BsaWI	WCCGGW	1 cut(s)	153
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 160
Bse1I	ACTGG	1 cut(s)	308
Bse21I	CCTNAGG	1 cut(s)	35
BseAI	TCCGGA	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	2 cut(s)	150, 298
BseLI	CCNNNNNNNGG	2 cut(s)	153, 160
BseMII	CTCAG	2 cut(s)	26, 201
BseNI	ACTGG	1 cut(s)	308
BseSI	GKGCMC	1 cut(s)	72
BsgI	GTGCAG	1 cut(s)	213
BshFI	GGCC	3 cut(s)	5, 51, 307
BsiHKAI	GWGCWC	1 cut(s)	227
BsiSI	CCGG	3 cut(s)	6, 154, 308
BslI	CCNNNNNNNGG	2 cut(s)	153, 160
BsnI	GGCC	3 cut(s)	5, 51, 307
Bsp1286I	GDGCHC	2 cut(s)	72, 227
Bsp13I	TCCGGA	1 cut(s)	153
Bsp143I	GATC	5 cut(s)	295, 389, 418, 457, 501
BspACI	CCGC	2 cut(s)	177, 328
BspANI	GGCC	3 cut(s)	5, 51, 307
BspCNI	CTCAG	2 cut(s)	27, 202
BspEI	TCCGGA	1 cut(s)	153
BspHI	TCATGA	1 cut(s)	282
BspLI	GGNNCC	2 cut(s)	312, 391
BspPI	GGATC	4 cut(s)	384, 397, 413, 465
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	5 cut(s)	295, 389, 418, 457, 501
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	2 cut(s)	275, 320
BstDEI	CTNAG	2 cut(s)	35, 210
BstF5I	GGATG	2 cut(s)	150, 298
BstKTI	GATC	5 cut(s)	298, 392, 421, 460, 504
BstMBI	GATC	5 cut(s)	295, 389, 418, 457, 501
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNI	CCWGG	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	405
BstSLI	GKGCMC	1 cut(s)	72
BstV2I	GAAGAC	1 cut(s)	422
BstX2I	RGATCY	3 cut(s)	389, 418, 457
BstYI	RGATCY	3 cut(s)	389, 418, 457
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	5, 51, 307
BtsCI	GGATG	2 cut(s)	150, 298
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
CaiI	CAGNNNCTG	1 cut(s)	460
CciI	TCATGA	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	2 cut(s)	233, 283
CviJI	RGCY	6 cut(s)	5, 51, 109, 240, 307, 508
CviKI_1	RGCY	6 cut(s)	5, 51, 109, 240, 307, 508
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	35, 210
DpnI	GATC	5 cut(s)	297, 391, 420, 459, 503
DpnII	GATC	5 cut(s)	295, 389, 418, 457, 501
EaeI	YGGCCR	3 cut(s)	3, 49, 305
Eco57I	CTGAAG	2 cut(s)	444, 482
Eco81I	CCTNAGG	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	405
FaeI	CATG	2 cut(s)	236, 286
FaiI	YATR	7 cut(s)	45, 234, 270, 284, 363, 512, 514
FatI	CATG	2 cut(s)	232, 282
FauI	CCCGC	1 cut(s)	184
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	329
FokI	GGATG	2 cut(s)	137, 305
Fsp4HI	GCNGC	1 cut(s)	329
GluI	GCNGC	1 cut(s)	329
HaeIII	GGCC	3 cut(s)	5, 51, 307
HapII	CCGG	3 cut(s)	6, 154, 308
Hin1II	CATG	2 cut(s)	236, 286
HpaII	CCGG	3 cut(s)	6, 154, 308
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	4 cut(s)	113, 188, 300, 462
Hpy188III	TCNNGA	5 cut(s)	154, 283, 422, 455, 499
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	2 cut(s)	104, 185
HpyAV	CCTTC	2 cut(s)	379, 419
HpyCH4III	ACNGT	2 cut(s)	275, 320
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	2 cut(s)	35, 210
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	236, 286
Kpn2I	TCCGGA	1 cut(s)	153
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	5 cut(s)	295, 389, 418, 457, 501
LmnI	GCTCC	2 cut(s)	114, 495
LweI	GCATC	1 cut(s)	444
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	5 cut(s)	297, 391, 420, 459, 503
MboI	GATC	5 cut(s)	295, 389, 418, 457, 501
MboII	GAAGA	3 cut(s)	23, 26, 422
MflI	RGATCY	3 cut(s)	389, 418, 457
MhlI	GDGCHC	2 cut(s)	72, 227
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	4 cut(s)	30, 154, 283, 404
MroI	TCCGGA	1 cut(s)	153
MroXI	GAANNNNTTC	1 cut(s)	429
MspI	CCGG	3 cut(s)	6, 154, 308
MspR9I	CCNGG	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	1 cut(s)	222
NdeII	GATC	5 cut(s)	295, 389, 418, 457, 501
NlaIII	CATG	2 cut(s)	236, 286
NlaIV	GGNNCC	2 cut(s)	312, 391
NmuCI	GTSAC	1 cut(s)	169
PagI	TCATGA	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	429
PkrI	GCNGC	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	2 cut(s)	312, 391
PstNI	CAGNNNCTG	1 cut(s)	460
PsuI	RGATCY	3 cut(s)	389, 418, 457
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SatI	GCNGC	1 cut(s)	329
Sau3AI	GATC	5 cut(s)	295, 389, 418, 457, 501
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	2 cut(s)	72, 227
SetI	ASST	7 cut(s)	36, 41, 111, 165, 171, 316, 430
SfaNI	GCATC	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
SsiI	CCGC	2 cut(s)	177, 328
StyD4I	CCNGG	1 cut(s)	405
TaaI	ACNGT	2 cut(s)	275, 320
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	2 cut(s)	87, 94
TauI	GCSGC	1 cut(s)	331
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	2 cut(s)	249, 299
TspRI	CASTG	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.