Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0011161

Physical Location & Seq

Genomic Coordinates Reverse (-)

27550045 .. 27551873

Gene Structure 1829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1129300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGCCGGAGAGGAAGAGACCAGCGAGTTCTACCTGAGGTACTACGTCGGCCACAAGGGCAAGTTCGGCCACGAGTTCCTGGAGTTCGAGTTTCGACCAGACGGCAAGCTCCGGTACGCCAACAATTCCAACTACAAGAACGACACCATCATTCGTAAGGAGGTCTACGTCACGCCTGCCGTCGTCAGGGAGTGCCGTCGTATCATCTCAGAGAGCGAGGTTTCTGATCATGAAGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009893 GO:0009987 GO:0010154 GO:0010183 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016604 GO:0016607 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035145 GO:0040011 GO:0042221 GO:0042330 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0046483 GO:0048316 GO:0048518 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050789 GO:0050896 GO:0050918 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

Mago_nashi

Protein Analysis

81

Amino Acids

9.5

Weight (kDa)

5.91

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mago_nashi	PF02792	10 - 77	3.8e-33	Mago nashi protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02140
fragaria_vesca	FvH4_7g10360 FvH4_7g10360
malus_domestica	MD00G1129300.v1.1 MD07G1109700.v1.1
prunus_persica	Prupe.2G133100_v2.0.a1
pyrus_communis	pycom07g09420 pycom07g09430 pycom12646g00070
rosa_chinensis	RchiOBHm_Chr1g0348061
rosa_laevigata	RLG00000028694
rosa_multiflora	Rmu_sc0000253.1_g000002
rosa_roxburghii	Rroxscaffold_4G00307280
rosa_rugosa	Rorug01G0191400 Rorug01G0191500
rosa_samantha	Rh1AG209600 Rh1BG175300 Rh1CG194000 Rh1DG204900
rosa_wichuraiana	Rw1G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	165
AcoI	YGGCCR	3 cut(s)	3, 49, 67
AfaI	GTAC	2 cut(s)	41, 116
AfiI	CCNNNNNNNGG	1 cut(s)	186
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	11
AoxI	GGCC	3 cut(s)	3, 49, 67
AxyI	CCTNAGG	1 cut(s)	35
BauI	CACGAG	1 cut(s)	71
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	3 cut(s)	118, 164, 180
BciT130I	CCWGG	1 cut(s)	80
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	11
BglI	GCCNNNNNGGC	1 cut(s)	57
Bme1390I	CCNGG	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	80
BpmI	CTGGAG	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse21I	CCTNAGG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMII	CTCAG	2 cut(s)	26, 222
BshFI	GGCC	3 cut(s)	5, 51, 69
BsiSI	CCGG	2 cut(s)	6, 112
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	11
BsnI	GGCC	3 cut(s)	5, 51, 69
Bso31I	GGTCTC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	226
BspANI	GGCC	3 cut(s)	5, 51, 69
BspCNI	CTCAG	2 cut(s)	27, 221
BspHI	TCATGA	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	11
BssMI	GATC	1 cut(s)	226
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	107, 177
BstDEI	CTNAG	2 cut(s)	35, 208
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 66
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	5, 51, 69
Cac8I	GCNNGC	2 cut(s)	107, 177
CciI	TCATGA	1 cut(s)	229
Csp6I	GTAC	2 cut(s)	40, 115
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	4 cut(s)	5, 51, 69, 109
CviKI_1	RGCY	4 cut(s)	5, 51, 69, 109
CviQI	GTAC	2 cut(s)	40, 115
DdeI	CTNAG	2 cut(s)	35, 208
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
EaeI	YGGCCR	3 cut(s)	3, 49, 67
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	11
Eco81I	CCTNAGG	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	78
FaeI	CATG	1 cut(s)	233
FaiI	YATR	1 cut(s)	231
FatI	CATG	1 cut(s)	229
FbaI	TGATCA	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	3 cut(s)	5, 51, 69
HapII	CCGG	2 cut(s)	6, 112
Hin1II	CATG	1 cut(s)	233
HpaII	CCGG	2 cut(s)	6, 112
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	211, 226
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	3 cut(s)	50, 185, 201
HpyAV	CCTTC	1 cut(s)	227
HpyCH4IV	ACGT	2 cut(s)	45, 168
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 66
HpyF3I	CTNAG	2 cut(s)	35, 208
HpySE526I	ACGT	2 cut(s)	45, 168
Hsp92II	CATG	1 cut(s)	233
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	9 cut(s)	19, 34, 47, 65, 92, 111, 125, 172, 189
MaeII	ACGT	2 cut(s)	45, 168
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	1 cut(s)	26
MluCI	AATT	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	4 cut(s)	4, 30, 154, 211
MspI	CCGG	2 cut(s)	6, 112
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	57, 66
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	1 cut(s)	233
NmuCI	GTSAC	1 cut(s)	169
PagI	TCATGA	1 cut(s)	229
PfoI	TCCNGGA	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
RsaI	GTAC	2 cut(s)	41, 116
RsaNI	GTAC	2 cut(s)	40, 115
Sau3AI	GATC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	80
SetI	ASST	7 cut(s)	36, 41, 48, 111, 165, 171, 222
Sse9I	AATT	1 cut(s)	124
StyD4I	CCNGG	1 cut(s)	78
TaiI	ACGT	2 cut(s)	48, 171
TaqI	TCGA	2 cut(s)	87, 94
TasI	AATT	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.