Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009401

Physical Location & Seq

Genomic Coordinates Forward (+)

907523 .. 909650

Gene Structure 2128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G03630.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGCTCTCCAAGCTGCCTATTCTCTTCTTCCTTCTACCATTTCAATCCAAAAAGAGGGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAGAGAAGACAGAAACCGCGATTTTCCACCGGTATTCGTGCACAGACAGTTACAGCCACGCCGCCGGCAAACGAAGCATCGCCGGAGCAAAAGAAGACTGAGAGAAAAGGCACTGCAGTGATCACTGGAGCTTCGTCTGGTTTAGGTTTAGCTACGGCCAAAGCTTTAGCAGACACAGGGAAATGGCATGTGATCATGGCTTGCAGGAACTTTCTCAAGGCCGAGAAGGCAGCGAGATCTGTTGGAATGTCCAAGGAAGATTACACAGTGATGCATCTTGATCTTGCTTCGCTTGAAAGCGTGAAGCAATTCGTTGAAAATTTCCGGAGAACAGAACAACCACTCGATGTTCTTGTCTGCAATGCCGCGGTTTACCAACCAACTGCTAAAGAGCCTTCTTTTACAGCTGAAGGCTTTGAGATAAGCGTTGGAACCAACCATCTCGGTCACTTTCTTCTCTCAAGATTGCTTCTTGATGACCTGAAAAAATCTGATTATCCATCAAAACGTATGATCATCGTAGGATCTATAACAGGAAACACAAATACTTTGGCTGGGAATGTACCGCCAAAGGCAAACCTTGGAGACCTAAGAGGCTTAGCGTCAGGATTGAATGGGCAAAACAGTTCAATGATAGATGGAGGAGAGTTTGATGGAGCAAAGGCTTACAAAGACAGCAAAGTATGCAATATGCTGACAATGCAGGAGCTTCACAGACGTTACCACGAGGAAACAGGAGTCACGTTTGCTTCTCTTTACCCTGGTTGCATCGCTACAACAGGGTTGTTCAGAGAACACATACCGCTGTTTCGGCTTCTTTTTCCGCCTTTTCAAAAGTATATCACCAAAGGTTACGTATCTGAAGAGGAAGCTGGCAAAAGACTAGCACAGGTTGTGAGTGACCCTAGTCTTGGGAAGTCAGGAGTGTATTGGAGTTGGAACAATAACTCGTCTTCGTTTGAGAATCAGCTTTCTAAAGAAGCAAGTGATGCGGAGAAGGCAAAGAAACTGTGGGAGGTTAGCGAGAAGCTTGTTGGTTTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003959 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009527 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009642 GO:0009646 GO:0009647 GO:0009707 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009941 GO:0010033 GO:0016020 GO:0016491 GO:0016627 GO:0016628 GO:0016630 GO:0016651 GO:0019867 GO:0019904 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042170 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050896 GO:0055035 GO:0055114 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

adh_short

Protein Analysis

401

Amino Acids

43.88

Weight (kDa)

9.18

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	88 - 180	2.6e-08	KR domain
adh_short	PF00106	89 - 232	9.6e-21	short chain dehydrogenase
adh_short_C2	PF13561	94 - 230	4.2e-11	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03630 AT1G03630 AT4G27440 AT4G27440 AT5G54190 AT5G54190
fragaria_vesca	FvH4_3g20600
malus_domestica	MD11G1241700.v1.1
prunus_persica	Prupe.4G185700_v2.0.a1 Prupe.4G185700_v2.0.a1 Prupe.4G185700_v2.0.a1
pyrus_communis	pycom11g21330
rosa_chinensis	RchiOBHm_Chr5g0034621
rosa_laevigata	RLG00000033559
rosa_multiflora	Rmu_sc0002460.1_g000093
rosa_roxburghii	Rroxscaffold_1G00045700
rosa_rugosa	Rorug05G0147200
rosa_samantha	Rh5AG239200 Rh5BG239900 Rh5CG270300 Rh5DG248100
rosa_wichuraiana	Rw5G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	178, 527
AccIII	TCCGGA	1 cut(s)	483
AciI	CCGC	8 cut(s)	176, 221, 525, 527, 725, 962, 983, 1151
AclWI	GGATC	1 cut(s)	691
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	2 cut(s)	62, 478
AcuI	CTGAAG	2 cut(s)	588, 1041
AfaI	GTAC	1 cut(s)	723
AfiI	CCNNNNNNNGG	2 cut(s)	55, 1070
AgeI	ACCGGT	1 cut(s)	188
AgsI	TTSAA	8 cut(s)	45, 67, 111, 455, 476, 772, 789, 992
AjnI	CCWGG	1 cut(s)	919
AleI	CACNNNNGTG	1 cut(s)	275
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	2 cut(s)	77, 738
Alw44I	GTGCAC	1 cut(s)	198
AlwI	GGATC	1 cut(s)	691
Aor13HI	TCCGGA	1 cut(s)	483
AoxI	GGCC	2 cut(s)	315, 378
ApaLI	GTGCAC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	14, 389
ApoI	RAATTY	2 cut(s)	62, 478
AsiGI	ACCGGT	1 cut(s)	188
Asp700I	GAANNNNTTC	1 cut(s)	467
AsuHPI	GGTGA	1 cut(s)	994
BaeGI	GKGCMC	1 cut(s)	202
BauI	CACGAG	1 cut(s)	884
BbsI	GAAGAC	3 cut(s)	172, 260, 1104
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	6 cut(s)	123, 158, 606, 667, 791, 806
BceAI	ACGGC	1 cut(s)	330
BciT130I	CCWGG	1 cut(s)	921
BclI	TGATCA	3 cut(s)	279, 351, 672
BcoDI	GTCTC	2 cut(s)	77, 738
BfaI	CTAG	2 cut(s)	1043, 1065
BfmI	CTRYAG	1 cut(s)	273
BglI	GCCNNNNNGGC	1 cut(s)	386
BglII	AGATCT	1 cut(s)	395
BisI	GCNGC	4 cut(s)	15, 221, 390, 525
BlpI	GCTNAGC	1 cut(s)	757
BlsI	GCNGC	4 cut(s)	16, 222, 391, 526
Bme1390I	CCNGG	1 cut(s)	921
BmiI	GGNNCC	1 cut(s)	592
BmrFI	CCNGG	1 cut(s)	921
BmsI	GCATC	5 cut(s)	245, 420, 442, 936, 1138
BoxI	GACNNNNGTC	1 cut(s)	1065
BpiI	GAAGAC	3 cut(s)	172, 260, 1104
BpmI	CTGGAG	1 cut(s)	306
Bpu1102I	GCTNAGC	1 cut(s)	757
BpuEI	CTTGAG	2 cut(s)	359, 604
BsaAI	YACGTR	1 cut(s)	1015
BsaI	GGTCTC	1 cut(s)	738
BsaJI	CCNNGG	4 cut(s)	411, 525, 739, 919
BsaWI	WCCGGW	2 cut(s)	188, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 1070
Bse118I	RCCGGY	2 cut(s)	188, 223
Bse1I	ACTGG	2 cut(s)	100, 289
Bse3DI	GCAATG	1 cut(s)	526
BseAI	TCCGGA	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	921
BseDI	CCNNGG	4 cut(s)	411, 525, 739, 919
BseLI	CCNNNNNNNGG	2 cut(s)	55, 1070
BseMI	GCAATG	1 cut(s)	526
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	100, 289
BseRI	GAGGAG	1 cut(s)	816
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	401
BseYI	CCCAGC	1 cut(s)	713
Bsh1236I	CGCG	2 cut(s)	178, 527
BshFI	GGCC	2 cut(s)	317, 380
BshTI	ACCGGT	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	202
BsiSI	CCGG	4 cut(s)	189, 224, 242, 484
BslI	CCNNNNNNNGG	2 cut(s)	55, 1070
BsmAI	GTCTC	2 cut(s)	77, 738
BsmBI	CGTCTC	1 cut(s)	77
BsnI	GGCC	2 cut(s)	317, 380
Bso31I	GGTCTC	1 cut(s)	738
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp13I	TCCGGA	1 cut(s)	483
Bsp143I	GATC	6 cut(s)	279, 351, 395, 439, 672, 683
Bsp1720I	GCTNAGC	1 cut(s)	757
BspACI	CCGC	8 cut(s)	176, 221, 525, 527, 725, 962, 983, 1151
BspANI	GGCC	2 cut(s)	317, 380
BspCNI	CTCAG	1 cut(s)	250
BspEI	TCCGGA	1 cut(s)	483
BspFNI	CGCG	2 cut(s)	178, 527
BspLI	GGNNCC	1 cut(s)	592
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	1 cut(s)	691
BspTNI	GGTCTC	1 cut(s)	738
BsrDI	GCAATG	1 cut(s)	526
BsrFI	RCCGGY	2 cut(s)	188, 223
BsrI	ACTGG	2 cut(s)	100, 289
BssAI	RCCGGY	2 cut(s)	188, 223
BssECI	CCNNGG	4 cut(s)	411, 525, 739, 919
BssMI	GATC	6 cut(s)	279, 351, 395, 439, 672, 683
BssSI	CACGAG	1 cut(s)	884
BssT1I	CCWWGG	2 cut(s)	411, 739
Bst2BI	CACGAG	1 cut(s)	884
Bst2UI	CCWGG	1 cut(s)	921
Bst4CI	ACNGT	4 cut(s)	208, 427, 785, 1170
Bst6I	CTCTTC	2 cut(s)	30, 1017
BstAPI	GCANNNNNTGC	2 cut(s)	843, 1148
BstBAI	YACGTR	1 cut(s)	1015
BstC8I	GCNNGC	3 cut(s)	225, 361, 1033
BstDEI	CTNAG	4 cut(s)	119, 258, 749, 757
BstDSI	CCRYGG	1 cut(s)	525
BstFNI	CGCG	2 cut(s)	178, 527
BstKTI	GATC	6 cut(s)	282, 354, 398, 442, 675, 686
BstMAI	GTCTC	2 cut(s)	77, 738
BstMBI	GATC	6 cut(s)	279, 351, 395, 439, 672, 683
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 233, 386, 843, 859, 970, 1148, 1157
BstNI	CCWGG	1 cut(s)	921
BstNSI	RCATGY	1 cut(s)	350
BstPAI	GACNNNNGTC	1 cut(s)	1065
BstSCI	CCNGG	1 cut(s)	919
BstSFI	CTRYAG	1 cut(s)	273
BstSLI	GKGCMC	1 cut(s)	202
BstSNI	TACGTA	1 cut(s)	1015
BstUI	CGCG	2 cut(s)	178, 527
BstV1I	GCAGC	1 cut(s)	401
BstV2I	GAAGAC	3 cut(s)	172, 260, 1104
BstX2I	RGATCY	2 cut(s)	395, 683
BstYI	RGATCY	2 cut(s)	395, 683
BsuRI	GGCC	2 cut(s)	317, 380
BtgI	CCRYGG	1 cut(s)	525
BtgZI	GCGATG	2 cut(s)	222, 913
BtsI	GCAGTG	2 cut(s)	270, 282
BtsIMutI	CAGTG	4 cut(s)	270, 282, 282, 432
Cac8I	GCNNGC	3 cut(s)	225, 361, 1033
Cfr10I	RCCGGY	2 cut(s)	188, 223
Cfr42I	CCGCGG	1 cut(s)	528
CseI	GACGC	1 cut(s)	750
Csp6I	GTAC	1 cut(s)	722
CspAI	ACCGGT	1 cut(s)	188
CviAII	CATG	3 cut(s)	347, 355, 1203
CviQI	GTAC	1 cut(s)	722
DdeI	CTNAG	4 cut(s)	119, 258, 749, 757
DpnI	GATC	6 cut(s)	281, 353, 397, 441, 674, 685
DpnII	GATC	6 cut(s)	279, 351, 395, 439, 672, 683
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	2 cut(s)	30, 1017
EarI	CTCTTC	2 cut(s)	30, 1017
EciI	GGCGGA	1 cut(s)	972
Eco105I	TACGTA	1 cut(s)	1015
Eco130I	CCWWGG	2 cut(s)	411, 739
Eco31I	GGTCTC	1 cut(s)	738
Eco32I	GATATC	1 cut(s)	135
Eco57I	CTGAAG	2 cut(s)	588, 1041
EcoRII	CCWGG	1 cut(s)	919
EcoRV	GATATC	1 cut(s)	135
EcoT14I	CCWWGG	2 cut(s)	411, 739
EcoT22I	ATGCAT	1 cut(s)	435
ErhI	CCWWGG	2 cut(s)	411, 739
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	3 cut(s)	350, 358, 1206
FaiI	YATR	9 cut(s)	348, 356, 671, 689, 844, 851, 959, 999, 1204
FatI	CATG	3 cut(s)	346, 354, 1202
FbaI	TGATCA	3 cut(s)	279, 351, 672
Fnu4HI	GCNGC	4 cut(s)	15, 221, 390, 525
Fsp4HI	GCNGC	4 cut(s)	15, 221, 390, 525
FspBI	CTAG	2 cut(s)	1043, 1065
GluI	GCNGC	4 cut(s)	15, 221, 390, 525
GsaI	CCCAGC	1 cut(s)	717
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	317, 380
HapII	CCGG	4 cut(s)	189, 224, 242, 484
HgaI	GACGC	1 cut(s)	750
Hin1II	CATG	3 cut(s)	350, 358, 1206
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HindIII	AAGCTT	2 cut(s)	321, 1187
HinfI	GANTC	2 cut(s)	897, 1123
HpaII	CCGG	4 cut(s)	189, 224, 242, 484
HphI	GGTGA	1 cut(s)	994
Hpy166II	GTNNAC	3 cut(s)	147, 200, 532
Hpy188I	TCNGA	3 cut(s)	652, 950, 1021
Hpy188III	TCNNGA	6 cut(s)	437, 484, 621, 632, 765, 1080
Hpy8I	GTNNAC	3 cut(s)	147, 200, 532
HpyAV	CCTTC	5 cut(s)	42, 379, 563, 564, 1150
HpyCH4III	ACNGT	4 cut(s)	208, 427, 785, 1170
HpyCH4IV	ACGT	4 cut(s)	667, 877, 902, 1014
HpyCH4V	TGCA	8 cut(s)	200, 275, 363, 433, 519, 846, 862, 927
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 233, 386, 843, 859, 970, 1148, 1157
HpyF3I	CTNAG	4 cut(s)	119, 258, 749, 757
HpySE526I	ACGT	4 cut(s)	667, 877, 902, 1014
Hsp92II	CATG	3 cut(s)	350, 358, 1206
Kpn2I	TCCGGA	1 cut(s)	483
KroI	GCCGGC	1 cut(s)	223
KroNI	GCCGGC	1 cut(s)	225
Ksp22I	TGATCA	3 cut(s)	279, 351, 672
KspI	CCGCGG	1 cut(s)	528
Kzo9I	GATC	6 cut(s)	279, 351, 395, 439, 672, 683
LmnI	GCTCC	4 cut(s)	244, 287, 815, 865
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	5 cut(s)	245, 420, 442, 936, 1138
MaeI	CTAG	2 cut(s)	1043, 1065
MaeII	ACGT	4 cut(s)	667, 877, 902, 1014
MaeIII	GTNAC	6 cut(s)	208, 605, 878, 898, 1010, 1058
MalI	GATC	6 cut(s)	281, 353, 397, 441, 674, 685
MboI	GATC	6 cut(s)	279, 351, 395, 439, 672, 683
MboII	GAAGA	9 cut(s)	17, 20, 93, 177, 265, 428, 605, 1034, 1104
MflI	RGATCY	2 cut(s)	395, 683
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	3 cut(s)	62, 467, 478
MlyI	GAGTC	1 cut(s)	906
MmeI	TCCRAC	3 cut(s)	382, 568, 1076
MnlI	CCTC	6 cut(s)	49, 746, 794, 880, 1018, 1168
Mph1103I	ATGCAT	1 cut(s)	435
MroI	TCCGGA	1 cut(s)	483
MroNI	GCCGGC	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	467
MslI	CAYNNNNRTG	2 cut(s)	275, 428
MspA1I	CMGCKG	3 cut(s)	527, 566, 964
MspI	CCGG	4 cut(s)	189, 224, 242, 484
MspR9I	CCNGG	1 cut(s)	921
MvaI	CCWGG	1 cut(s)	921
MvnI	CGCG	2 cut(s)	178, 527
MwoI	GCNNNNNNNGC	8 cut(s)	11, 233, 386, 843, 859, 970, 1148, 1157
NaeI	GCCGGC	1 cut(s)	225
NdeII	GATC	6 cut(s)	279, 351, 395, 439, 672, 683
NgoMIV	GCCGGC	1 cut(s)	223
NlaIII	CATG	3 cut(s)	350, 358, 1206
NlaIV	GGNNCC	1 cut(s)	592
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	3 cut(s)	605, 898, 1058
NsiI	ATGCAT	1 cut(s)	435
NspI	RCATGY	1 cut(s)	350
OliI	CACNNNNGTG	1 cut(s)	275
PdiI	GCCGGC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	1 cut(s)	1123
PinAI	ACCGGT	1 cut(s)	188
PkrI	GCNGC	4 cut(s)	16, 222, 391, 526
PleI	GAGTC	1 cut(s)	905
PpsI	GAGTC	1 cut(s)	905
Ppu21I	YACGTR	1 cut(s)	1015
PshAI	GACNNNNGTC	1 cut(s)	1065
Psp6I	CCWGG	1 cut(s)	919
PspFI	CCCAGC	1 cut(s)	713
PspGI	CCWGG	1 cut(s)	919
PspN4I	GGNNCC	1 cut(s)	592
PstI	CTGCAG	1 cut(s)	277
PsuI	RGATCY	2 cut(s)	395, 683
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	1 cut(s)	723
RsaNI	GTAC	1 cut(s)	722
RseI	CAYNNNNRTG	2 cut(s)	275, 428
SacII	CCGCGG	1 cut(s)	528
SatI	GCNGC	4 cut(s)	15, 221, 390, 525
Sau3AI	GATC	6 cut(s)	279, 351, 395, 439, 672, 683
SchI	GAGTC	1 cut(s)	906
ScrFI	CCNGG	1 cut(s)	921
SduI	GDGCHC	1 cut(s)	202
SfaNI	GCATC	5 cut(s)	245, 420, 442, 936, 1138
SfcI	CTRYAG	1 cut(s)	273
Sfr303I	CCGCGG	1 cut(s)	528
SgrBI	CCGCGG	1 cut(s)	528
SmiMI	CAYNNNNRTG	2 cut(s)	275, 428
SmlI	CTYRAG	2 cut(s)	374, 619
SmoI	CTYRAG	2 cut(s)	374, 619
SnaBI	TACGTA	1 cut(s)	1015
Sse9I	AATT	3 cut(s)	62, 467, 478
SsiI	CCGC	8 cut(s)	176, 221, 525, 527, 725, 962, 983, 1151
SspMI	CTAG	2 cut(s)	1043, 1065
StyD4I	CCNGG	1 cut(s)	919
StyI	CCWWGG	2 cut(s)	411, 739
TaaI	ACNGT	4 cut(s)	208, 427, 785, 1170
TaiI	ACGT	4 cut(s)	670, 880, 905, 1017
TaqI	TCGA	1 cut(s)	504
TaqII	GACCGA	1 cut(s)	593
TasI	AATT	3 cut(s)	62, 467, 478
TauI	GCSGC	2 cut(s)	223, 527
TfiI	GAWTC	1 cut(s)	1123
TscAI	CASTG	4 cut(s)	277, 282, 289, 432
TseFI	GTSAC	3 cut(s)	605, 898, 1058
TseI	GCWGC	2 cut(s)	14, 389
Tsp45I	GTSAC	3 cut(s)	605, 898, 1058
TspDTI	ATGAA	1 cut(s)	93
TspRI	CASTG	4 cut(s)	277, 282, 289, 432
VneI	GTGCAC	1 cut(s)	198
XapI	RAATTY	2 cut(s)	62, 478
XceI	RCATGY	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	467
XspI	CTAG	2 cut(s)	1043, 1065
Zsp2I	ATGCAT	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.