Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009401

Physical Location & Seq

Genomic Coordinates Forward (+)

13725546 .. 13727440

Gene Structure 1895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGCCCTTCAAGCTGCTTCTTTGGTCTCCTCTGCTTTCTCTGTTCGCAAAGATGCGAAGTTGAATGCTTCTTCATCATCTTTCAAGGACTCGAGTCTTTTTGGTGCCTCCATTACCGACCAAATCAAATCCGAACATGGATCTTCCTCGTTAAGATTCAAGAGAGAACAGAGCTTAAGGAATCTAGCAATTCGAGCCCAAACCGCTGCGACTTCAAGCCCTACAGTTACAAAATCCGTGGACGGCAAGAAAACGTTGAGGAAAGGAAATGTGGTGGTCACTGGAGCCTCGTCTGGGTTAGGTCTAGCCACGGCTAAAGCTCTAGCTGAGACAGGGAAATGGAACGTGATAATGGCGTGCAGAGACTTCCTTAAAGCCGAGAGAGCTGCTAAATCCGTAGGGATGCCTAAAGACAGCTACACAGTGATGCATTTAGACTTAGCCTCGTTGGACAGCGTGAGACAGTTTGTTGATAATTTCAGGAGAACAGAGACGCCTCTCGATGTTTTGGTCTGCAATGCTGCGGTTTATTTCCCGACAGCTAAAGAGCCTACTTACAGTGCTGAAGGGTTTGAGCTTAGTGTTGCGACGAACCATTTGGGACATTTTCTTCTCGCAAGGTTGTTGCTTGATGACTTGAAGAAATCTGATTACCCTTCAAAGCGTCTCATCATCGTCGGATCCATTACCGGGAACACGAATACATTGGCGGGTAATGTACCACCGAAGGCGAATCTCGGTGATTTGAGGGGTTTAGCCGGCGGATTAAACGGTTTAAACAGCTCAGCTATGATTGATGGAGGAGATTTCGACGGTGCAAAGGCTTACAAAGACAGTAAAGTCTGCAATATGTTGACAATGCAAGAGTTTCACAGGCGTTTCCATGAAGAAACTGGAGTCACTTTCGCTTCGCTTTACCCCGGTTGCATCGCCTCCACAGGTTTATTCCGAGAGCACATTCCTCTCTTCCGTGCCCTCTTCCCTCCCTTTCAGAAGTACATCACTAAAGGATATGTCTCCGAAACAGAGTCAGGCAAAAGACTTGCTCAGGTGGTGAGTGATCCAAGCTTGACGAAATCAGGGGTTTATTGGAGCTGGAACAATGCTTCGGCTTCTTTTGAGAACCAGTTATCAGAAGAAGCAAGTGACGTTGAGAAGGCTCGTAAAGTGTGGGAGATCAGTGAGAAGCTCGTGGGCTTGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003959 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009527 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009642 GO:0009646 GO:0009647 GO:0009707 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009941 GO:0010033 GO:0016020 GO:0016491 GO:0016627 GO:0016628 GO:0016630 GO:0016651 GO:0019867 GO:0019904 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042170 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050896 GO:0055035 GO:0055114 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

adh_short

Protein Analysis

401

Amino Acids

43.36

Weight (kDa)

9.23

Isoelectric Point (pI)

33.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	89 - 177	3.6e-06	KR domain
adh_short	PF00106	91 - 234	1.7e-19	short chain dehydrogenase
adh_short_C2	PF13561	95 - 231	6.4e-11	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03630 AT1G03630 AT4G27440 AT4G27440 AT5G54190 AT5G54190
fragaria_vesca	FvH4_3g20600
malus_domestica	MD11G1241700.v1.1
prunus_persica	Prupe.4G185700_v2.0.a1 Prupe.4G185700_v2.0.a1 Prupe.4G185700_v2.0.a1
pyrus_communis	pycom11g21330
rosa_chinensis	RchiOBHm_Chr5g0034621
rosa_laevigata	RLG00000033559
rosa_multiflora	Rmu_sc0002460.1_g000093
rosa_roxburghii	Rroxscaffold_1G00045700
rosa_rugosa	Rorug05G0147200
rosa_samantha	Rh5AG239200 Rh5BG239900 Rh5CG270300 Rh5DG248100
rosa_wichuraiana	Rw5G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	839
AccB1I	GGYRCC	1 cut(s)	104
AciI	CCGC	4 cut(s)	204, 524, 710, 762
AclI	AACGTT	1 cut(s)	254
AclWI	GGATC	4 cut(s)	148, 675, 688, 1055
AcuI	CTGAAG	1 cut(s)	585
AcyI	GRCGYC	1 cut(s)	494
AfaI	GTAC	2 cut(s)	720, 998
AfiI	CCNNNNNNNGG	2 cut(s)	294, 690
AflII	CTTAAG	1 cut(s)	175
AgsI	TTSAA	7 cut(s)	11, 64, 85, 160, 216, 640, 660
Alw21I	GWGCWC	1 cut(s)	957
Alw26I	GTCTC	7 cut(s)	31, 323, 357, 454, 485, 671, 1021
AlwI	GGATC	4 cut(s)	148, 675, 688, 1055
Ama87I	CYCGRG	1 cut(s)	91
AoxI	GGCC	2 cut(s)	3, 1200
ApeKI	GCWGC	4 cut(s)	14, 206, 386, 521
ArsI	GACNNNNNNTTYG	2 cut(s)	580, 612
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	691, 921
AsuHPI	GGTGA	2 cut(s)	752, 1066
AvaI	CYCGRG	1 cut(s)	91
BaeGI	GKGCMC	1 cut(s)	976
BamHI	GGATCC	1 cut(s)	680
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	199
BauI	CACGAG	1 cut(s)	1190
Bbv12I	GWGCWC	1 cut(s)	957
BbvI	GCAGC	3 cut(s)	193, 373, 508
BccI	CCATC	1 cut(s)	791
BceAI	ACGGC	2 cut(s)	259, 327
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BcnI	CCSGG	2 cut(s)	691, 921
BcoDI	GTCTC	7 cut(s)	31, 323, 357, 454, 485, 671, 1021
BfaI	CTAG	3 cut(s)	185, 305, 323
BfmI	CTRYAG	1 cut(s)	222
BfrI	CTTAAG	1 cut(s)	175
BisI	GCNGC	4 cut(s)	15, 207, 387, 522
BlpI	GCTNAGC	1 cut(s)	784
BlsI	GCNGC	4 cut(s)	16, 208, 388, 523
Bme1390I	CCNGG	2 cut(s)	691, 921
BmeT110I	CYCGRG	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	106, 286, 682
BmrFI	CCNGG	2 cut(s)	691, 921
BmsI	GCATC	4 cut(s)	43, 393, 417, 936
BoxI	GACNNNNGTC	1 cut(s)	93
BpmI	CTGGAG	2 cut(s)	303, 915
Bpu10I	CCTNAGC	1 cut(s)	1047
Bpu1102I	GCTNAGC	1 cut(s)	784
BpuMI	CCSGG	2 cut(s)	691, 921
BsaHI	GRCGYC	1 cut(s)	494
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	3 cut(s)	237, 309, 919
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 690
Bse118I	RCCGGY	1 cut(s)	758
Bse1I	ACTGG	3 cut(s)	286, 898, 1126
Bse3DI	GCAATG	1 cut(s)	523
BseDI	CCNNGG	3 cut(s)	237, 309, 919
BseGI	GGATG	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	294, 690
BseMI	GCAATG	1 cut(s)	523
BseMII	CTCAG	3 cut(s)	318, 798, 1061
BseNI	ACTGG	3 cut(s)	286, 898, 1126
BseRI	GAGGAG	2 cut(s)	19, 816
BseSI	GKGCMC	1 cut(s)	976
BseXI	GCAGC	3 cut(s)	193, 373, 508
BsgI	GTGCAG	1 cut(s)	379
BshFI	GGCC	2 cut(s)	5, 1202
BshNI	GGYRCC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	957
BsiHKCI	CYCGRG	1 cut(s)	91
BsiSI	CCGG	3 cut(s)	690, 759, 921
BslFI	GGGAC	1 cut(s)	615
BslI	CCNNNNNNNGG	2 cut(s)	294, 690
BsmAI	GTCTC	7 cut(s)	31, 323, 357, 454, 485, 671, 1021
BsmBI	CGTCTC	2 cut(s)	485, 671
BsmFI	GGGAC	1 cut(s)	615
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	2 cut(s)	5, 1202
Bso31I	GGTCTC	1 cut(s)	31
BsoBI	CYCGRG	1 cut(s)	91
Bsp1286I	GDGCHC	3 cut(s)	199, 957, 976
Bsp143I	GATC	4 cut(s)	140, 680, 1060, 1176
Bsp1720I	GCTNAGC	1 cut(s)	784
BspACI	CCGC	4 cut(s)	204, 524, 710, 762
BspANI	GGCC	2 cut(s)	5, 1202
BspCNI	CTCAG	3 cut(s)	319, 797, 1060
BspLI	GGNNCC	3 cut(s)	106, 286, 682
BspPI	GGATC	4 cut(s)	148, 675, 688, 1055
BspT107I	GGYRCC	1 cut(s)	104
BspTI	CTTAAG	1 cut(s)	175
BspTNI	GGTCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	523
BsrFI	RCCGGY	1 cut(s)	758
BsrI	ACTGG	3 cut(s)	286, 898, 1126
BssAI	RCCGGY	1 cut(s)	758
BssECI	CCNNGG	3 cut(s)	237, 309, 919
BssMI	GATC	4 cut(s)	140, 680, 1060, 1176
BssNI	GRCGYC	1 cut(s)	494
BssSI	CACGAG	1 cut(s)	1190
Bst2BI	CACGAG	1 cut(s)	1190
Bst4CI	ACNGT	7 cut(s)	226, 424, 465, 560, 773, 815, 836
Bst6I	CTCTTC	2 cut(s)	971, 983
BstACI	GRCGYC	1 cut(s)	494
BstAFI	CTTAAG	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	358, 760
BstDEI	CTNAG	5 cut(s)	327, 439, 578, 784, 1047
BstDSI	CCRYGG	2 cut(s)	237, 309
BstF5I	GGATG	1 cut(s)	408
BstKTI	GATC	4 cut(s)	143, 683, 1063, 1179
BstMAI	GTCTC	7 cut(s)	31, 323, 357, 454, 485, 671, 1021
BstMBI	GATC	4 cut(s)	140, 680, 1060, 1176
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 194, 203, 383
BstPAI	GACNNNNGTC	1 cut(s)	93
BstSCI	CCNGG	2 cut(s)	689, 919
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	976
BstV1I	GCAGC	3 cut(s)	193, 373, 508
BstX2I	RGATCY	2 cut(s)	140, 680
BstYI	RGATCY	2 cut(s)	140, 680
BsuRI	GGCC	2 cut(s)	5, 1202
BtgI	CCRYGG	2 cut(s)	237, 309
BtgZI	GCGATG	1 cut(s)	913
BtsCI	GGATG	1 cut(s)	408
BtsIMutI	CAGTG	4 cut(s)	279, 429, 565, 1186
Cac8I	GCNNGC	2 cut(s)	358, 760
Cfr10I	RCCGGY	1 cut(s)	758
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	2 cut(s)	502, 653
Csp6I	GTAC	2 cut(s)	719, 997
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviAII	CATG	2 cut(s)	137, 884
CviQI	GTAC	2 cut(s)	719, 997
DdeI	CTNAG	5 cut(s)	327, 439, 578, 784, 1047
DpnI	GATC	4 cut(s)	142, 682, 1062, 1178
DpnII	GATC	4 cut(s)	140, 680, 1060, 1176
DraI	TTTAAA	1 cut(s)	777
DrdI	GACNNNNNNGTC	1 cut(s)	839
DseDI	GACNNNNNNGTC	1 cut(s)	839
Eam1104I	CTCTTC	2 cut(s)	971, 983
EarI	CTCTTC	2 cut(s)	971, 983
EciI	GGCGGA	1 cut(s)	777
Eco24I	GRGCYC	1 cut(s)	199
Eco31I	GGTCTC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	585
Eco88I	CYCGRG	1 cut(s)	91
EcoT22I	ATGCAT	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	199
Esp3I	CGTCTC	2 cut(s)	485, 671
FaeI	CATG	2 cut(s)	140, 887
FaiI	YATR	5 cut(s)	138, 791, 851, 885, 1014
FaqI	GGGAC	1 cut(s)	615
FatI	CATG	2 cut(s)	136, 883
FauI	CCCGC	1 cut(s)	703
Fnu4HI	GCNGC	4 cut(s)	15, 207, 387, 522
FokI	GGATG	1 cut(s)	415
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	4 cut(s)	15, 207, 387, 522
FspBI	CTAG	3 cut(s)	185, 305, 323
GluI	GCNGC	4 cut(s)	15, 207, 387, 522
GsuI	CTGGAG	2 cut(s)	303, 915
HaeIII	GGCC	2 cut(s)	5, 1202
HapII	CCGG	3 cut(s)	690, 759, 921
HgaI	GACGC	2 cut(s)	502, 653
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	2 cut(s)	140, 887
HincII	GTYRAC	1 cut(s)	855
HindII	GTYRAC	1 cut(s)	855
HindIII	AAGCTT	1 cut(s)	1066
HinfI	GANTC	7 cut(s)	89, 94, 156, 181, 733, 897, 1028
HpaII	CCGG	3 cut(s)	690, 759, 921
HphI	GGTGA	2 cut(s)	752, 1066
Hpy166II	GTNNAC	2 cut(s)	241, 855
Hpy188I	TCNGA	7 cut(s)	133, 649, 680, 950, 993, 1021, 1135
Hpy188III	TCNNGA	4 cut(s)	160, 481, 500, 535
Hpy8I	GTNNAC	2 cut(s)	241, 855
Hpy99I	CGWCG	3 cut(s)	592, 680, 815
HpyAV	CCTTC	5 cut(s)	17, 560, 666, 721, 1150
HpyCH4III	ACNGT	7 cut(s)	226, 424, 465, 560, 773, 815, 836
HpyCH4IV	ACGT	3 cut(s)	254, 345, 1149
HpyCH4V	TGCA	7 cut(s)	360, 430, 516, 818, 846, 862, 927
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 194, 203, 383
HpyF3I	CTNAG	5 cut(s)	327, 439, 578, 784, 1047
HpySE526I	ACGT	3 cut(s)	254, 345, 1149
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	2 cut(s)	140, 887
KroI	GCCGGC	1 cut(s)	758
KroNI	GCCGGC	1 cut(s)	760
Kzo9I	GATC	4 cut(s)	140, 680, 1060, 1176
LmnI	GCTCC	2 cut(s)	284, 1092
Lsp1109I	GCAGC	3 cut(s)	193, 373, 508
LweI	GCATC	4 cut(s)	43, 393, 417, 936
MaeI	CTAG	3 cut(s)	185, 305, 323
MaeII	ACGT	3 cut(s)	254, 345, 1149
MaeIII	GTNAC	4 cut(s)	226, 277, 898, 1145
MalI	GATC	4 cut(s)	142, 682, 1062, 1178
MboI	GATC	4 cut(s)	140, 680, 1060, 1176
MboII	GAAGA	8 cut(s)	63, 135, 602, 652, 899, 958, 970, 1148
MflI	RGATCY	2 cut(s)	140, 680
MhlI	GDGCHC	3 cut(s)	199, 957, 976
MluCI	AATT	2 cut(s)	189, 475
MlyI	GAGTC	4 cut(s)	83, 103, 906, 1037
MmeI	TCCRAC	2 cut(s)	429, 658
Mph1103I	ATGCAT	1 cut(s)	432
MroNI	GCCGGC	1 cut(s)	758
MseI	TTAA	5 cut(s)	152, 176, 372, 767, 776
MslI	CAYNNNNRTG	1 cut(s)	425
MspA1I	CMGCKG	1 cut(s)	206
MspCI	CTTAAG	1 cut(s)	175
MspI	CCGG	3 cut(s)	690, 759, 921
MspR9I	CCNGG	2 cut(s)	691, 921
MssI	GTTTAAAC	1 cut(s)	777
Mva1269I	GAATGC	1 cut(s)	70
MwoI	GCNNNNNNNGC	4 cut(s)	11, 194, 203, 383
NaeI	GCCGGC	1 cut(s)	760
NciI	CCSGG	2 cut(s)	691, 921
NdeII	GATC	4 cut(s)	140, 680, 1060, 1176
NgoMIV	GCCGGC	1 cut(s)	758
NlaIII	CATG	2 cut(s)	140, 887
NlaIV	GGNNCC	3 cut(s)	106, 286, 682
NmeAIII	GCCGAG	1 cut(s)	403
NmuCI	GTSAC	3 cut(s)	277, 898, 1145
NsiI	ATGCAT	1 cut(s)	432
PaeR7I	CTCGAG	1 cut(s)	91
PctI	GAATGC	1 cut(s)	70
PdiI	GCCGGC	1 cut(s)	760
PfeI	GAWTC	3 cut(s)	156, 181, 733
PkrI	GCNGC	4 cut(s)	16, 208, 388, 523
PleI	GAGTC	4 cut(s)	83, 102, 905, 1036
PmeI	GTTTAAAC	1 cut(s)	777
PpsI	GAGTC	4 cut(s)	83, 102, 905, 1036
PshAI	GACNNNNGTC	1 cut(s)	93
Psp1406I	AACGTT	1 cut(s)	254
PspN4I	GGNNCC	3 cut(s)	106, 286, 682
PspPI	GGNCC	1 cut(s)	4
PspXI	VCTCGAGB	1 cut(s)	91
PsuI	RGATCY	2 cut(s)	140, 680
RsaI	GTAC	2 cut(s)	720, 998
RsaNI	GTAC	2 cut(s)	719, 997
RseI	CAYNNNNRTG	1 cut(s)	425
SaqAI	TTAA	5 cut(s)	152, 176, 372, 767, 776
SatI	GCNGC	4 cut(s)	15, 207, 387, 522
Sau3AI	GATC	4 cut(s)	140, 680, 1060, 1176
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	4 cut(s)	83, 103, 906, 1037
ScrFI	CCNGG	2 cut(s)	691, 921
SduI	GDGCHC	3 cut(s)	199, 957, 976
SfaNI	GCATC	4 cut(s)	43, 393, 417, 936
SfcI	CTRYAG	1 cut(s)	222
Sfr274I	CTCGAG	1 cut(s)	91
SlaI	CTCGAG	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	2 cut(s)	91, 175
SmoI	CTYRAG	2 cut(s)	91, 175
Sse9I	AATT	2 cut(s)	189, 475
SsiI	CCGC	4 cut(s)	204, 524, 710, 762
SspMI	CTAG	3 cut(s)	185, 305, 323
StyD4I	CCNGG	2 cut(s)	689, 919
TaaI	ACNGT	7 cut(s)	226, 424, 465, 560, 773, 815, 836
TaiI	ACGT	3 cut(s)	257, 348, 1152
TaqI	TCGA	4 cut(s)	92, 193, 501, 810
TasI	AATT	2 cut(s)	189, 475
TatI	WGTACW	1 cut(s)	996
TfiI	GAWTC	3 cut(s)	156, 181, 733
Tru1I	TTAA	5 cut(s)	152, 176, 372, 767, 776
Tru9I	TTAA	5 cut(s)	152, 176, 372, 767, 776
TscAI	CASTG	4 cut(s)	286, 429, 565, 1186
TseFI	GTSAC	3 cut(s)	277, 898, 1145
TseI	GCWGC	4 cut(s)	14, 206, 386, 521
Tsp45I	GTSAC	3 cut(s)	277, 898, 1145
TspDTI	ATGAA	2 cut(s)	63, 900
TspGWI	ACGGA	3 cut(s)	226, 385, 959
TspRI	CASTG	4 cut(s)	286, 429, 565, 1186
Vha464I	CTTAAG	1 cut(s)	175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	890
XhoI	CTCGAG	1 cut(s)	91
XspI	CTAG	3 cut(s)	185, 305, 323
Zsp2I	ATGCAT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.