Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0009401

Physical Location & Seq

Genomic Coordinates Reverse (-)

29058149 .. 29060015

Gene Structure 1867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG239200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCTCTTCGTGCTGCTTCTGTGGTTTCCTCTGCTTTCTCTGCTCCCAAGGAGGGAAAGTCAAGTGCTTCTTTCAAGGATTCAAGCCTTTTTGGAGTCTCATTCTCAGAAAATCTCAAGGCTGATTTCAGCTCTGTTGCACTAAGCTGCAAGAGAGAGTTCAAGCCAGTGAGGGCTCAAACAGCGGCCACAGCATCCCCAGCTATCAACAAGTCCACATCAGATGGGAAGAAGACTTTAAGAAAAGGCAGTGTAGTGATCACTGGTGCCTCCTCTGGACTTGGTCTAGCAACTGCAAAGGCTTTGGCCGAAACCGGAAAATGGCATGTAATTATGGCATGCAGGGATTTCCTCAAGGCCGAAAGAGCTGCCAAGGCAGCTGGGATGCCTAAAGAGAACTACACAATCATGCATCTAGACCTTGCTTCTCTAGATAGCGTTCGGCAATTTGTTGATAACTTCAGAAGATCTGAACGCCCCCTTGATGTTCTGGTCTGCAATGCTGCTGTGTATTTACCAACTGCTAAAGAGCCTACATTCACTGCTGATGGGTTTGAACTTAGTGTTGGGACTAACCATCTTGGACACTTCCTTCTTGCGCGGTTGATGGTTGAGGATTTGAACAAATCCGATTACCCTTCAAGGAGGCTCATCATTGTTGGCTCAATTACAGGGAACACAAACACTTTGGCTGGAAATGTACCTCCAAAGGCCAACCTTGGGGACCTGAGGGGACTTGCAGGGGGCGTAAATGGGGTCAACAGCTCGGCCATGATTGACGGTGGAGACTTTGATGGTGCCAAGGCATACAAGGACAGCAAAGTCTGCAACATGCTCACAATGCAAGAGTTCCACAGGCGCTACCATGAGGAGACTGGGATAACATTCGCTTCCCTTTACCCGGGCTGCATTGCCACAACTGGCTTGTTCAGGGAGCACATTCCCTTGTTCAGGCTTCTGTTCCCTCCATTCCAAAAGTACATCACCAAGGGCTATGTCTCGGAAGAAGAGTCTGGAAAGAGACTTGCTCAGGTTGTGAGCGACCCAAGCTTGACAAAGTCAGGAGTCTACTGGAGCTGGAACAAGACCTCTGCTTCATTTGAGAACCAACTGTCTGAAGAAGCCAGTGATGCAGAAAAGGCTCGCAAGGTGTGGGAAGTCAGTGAGAAGCTTGTCGGTTTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009527 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009642 GO:0009646 GO:0009647 GO:0009707 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009941 GO:0010033 GO:0016020 GO:0016491 GO:0016627 GO:0016628 GO:0016630 GO:0019867 GO:0019904 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042170 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050896 GO:0055035 GO:0055114 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

adh_short

Protein Analysis

395

Amino Acids

42.68

Weight (kDa)

9.1

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	83 - 171	1.9e-07	KR domain
adh_short	PF00106	85 - 227	5.9e-18	short chain dehydrogenase
adh_short_C2	PF13561	89 - 225	4.8e-11	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03630 AT1G03630 AT4G27440 AT4G27440 AT5G54190 AT5G54190
fragaria_vesca	FvH4_3g20600
malus_domestica	MD11G1241700.v1.1
prunus_persica	Prupe.4G185700_v2.0.a1 Prupe.4G185700_v2.0.a1 Prupe.4G185700_v2.0.a1
pyrus_communis	pycom11g21330
rosa_chinensis	RchiOBHm_Chr5g0034621
rosa_laevigata	RLG00000033559
rosa_multiflora	Rmu_sc0002460.1_g000093
rosa_roxburghii	Rroxscaffold_1G00045700
rosa_rugosa	Rorug05G0147200
rosa_samantha	Rh5AG239200 Rh5BG239900 Rh5CG270300 Rh5DG248100
rosa_wichuraiana	Rw5G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	821
AccB1I	GGYRCC	2 cut(s)	266, 797
AccI	GTMKAC	1 cut(s)	1068
AccII	CGCG	1 cut(s)	601
AciI	CCGC	2 cut(s)	185, 601
AcoI	YGGCCR	3 cut(s)	186, 306, 768
AcuI	CTGAAG	2 cut(s)	445, 1137
AfaI	GTAC	2 cut(s)	702, 980
AfiI	CCNNNNNNNGG	5 cut(s)	53, 321, 720, 901, 951
AgsI	TTSAA	6 cut(s)	76, 84, 163, 557, 622, 642
AjuI	GAANNNNNNNTTGG	2 cut(s)	549, 581
AluBI	AGCT	9 cut(s)	132, 147, 203, 368, 380, 765, 1050, 1077, 1171
AluI	AGCT	9 cut(s)	132, 147, 203, 368, 380, 765, 1050, 1077, 1171
Alw21I	GWGCWC	1 cut(s)	939
Alw26I	GTCTC	5 cut(s)	103, 780, 866, 1003, 1015
Ama87I	CYCGRG	1 cut(s)	901
AoxI	GGCC	5 cut(s)	186, 306, 357, 711, 768
ApeKI	GCWGC	6 cut(s)	14, 147, 368, 377, 503, 906
AspLEI	GCGC	2 cut(s)	601, 861
AspS9I	GGNCC	1 cut(s)	724
AsuC2I	CCSGG	2 cut(s)	902, 903
AsuHPI	GGTGA	1 cut(s)	976
AvaI	CYCGRG	1 cut(s)	901
AvaII	GGWCC	1 cut(s)	724
AxyI	CCTNAGG	1 cut(s)	728
BanI	GGYRCC	2 cut(s)	266, 797
BanII	GRGCYC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	939
BbvI	GCAGC	5 cut(s)	134, 355, 389, 490, 893
BccI	CCATC	5 cut(s)	218, 542, 585, 601, 788
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BclI	TGATCA	1 cut(s)	258
BcnI	CCSGG	2 cut(s)	902, 903
BcoDI	GTCTC	5 cut(s)	103, 780, 866, 1003, 1015
BfaI	CTAG	3 cut(s)	287, 416, 431
BfoI	RGCGCY	1 cut(s)	862
BglII	AGATCT	1 cut(s)	467
BisI	GCNGC	7 cut(s)	15, 148, 186, 369, 378, 504, 907
BlsI	GCNGC	7 cut(s)	16, 149, 187, 370, 379, 505, 908
Bme1390I	CCNGG	2 cut(s)	902, 903
Bme18I	GGWCC	1 cut(s)	724
BmeT110I	CYCGRG	1 cut(s)	901
BmgT120I	GGNCC	1 cut(s)	724
BmiI	GGNNCC	3 cut(s)	268, 725, 799
BmrFI	CCNGG	2 cut(s)	902, 903
BmrI	ACTGGG	1 cut(s)	885
BmsI	GCATC	4 cut(s)	203, 375, 421, 1120
BmuI	ACTGGG	1 cut(s)	885
BpiI	GAAGAC	1 cut(s)	239
BplI	GAGNNNNNCTC	2 cut(s)	1012, 1044
BpmI	CTGGAG	1 cut(s)	1093
Bpu10I	CCTNAGC	1 cut(s)	1029
BpuEI	CTTGAG	2 cut(s)	101, 338
BpuMI	CCSGG	2 cut(s)	902, 903
BsaJI	CCNNGG	6 cut(s)	48, 372, 718, 801, 901, 987
BsaWI	WCCGGW	1 cut(s)	314
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	5 cut(s)	53, 321, 720, 901, 951
Bse1I	ACTGG	6 cut(s)	167, 268, 880, 925, 1076, 1125
Bse21I	CCTNAGG	1 cut(s)	728
Bse3DI	GCAATG	2 cut(s)	505, 909
BseDI	CCNNGG	6 cut(s)	48, 372, 718, 801, 901, 987
BseGI	GGATG	2 cut(s)	194, 390
BseLI	CCNNNNNNNGG	5 cut(s)	53, 321, 720, 901, 951
BseMI	GCAATG	2 cut(s)	505, 909
BseMII	CTCAG	3 cut(s)	120, 719, 1043
BseNI	ACTGG	6 cut(s)	167, 268, 880, 925, 1076, 1125
BseRI	GAGGAG	2 cut(s)	262, 884
BseXI	GCAGC	5 cut(s)	134, 355, 389, 490, 893
BseYI	CCCAGC	2 cut(s)	199, 380
Bsh1236I	CGCG	1 cut(s)	601
BshFI	GGCC	5 cut(s)	188, 308, 359, 713, 770
BshNI	GGYRCC	2 cut(s)	266, 797
BsiHKAI	GWGCWC	1 cut(s)	939
BsiHKCI	CYCGRG	1 cut(s)	901
BsiSI	CCGG	2 cut(s)	315, 902
BslFI	GGGAC	3 cut(s)	583, 737, 747
BslI	CCNNNNNNNGG	5 cut(s)	53, 321, 720, 901, 951
BsmAI	GTCTC	5 cut(s)	103, 780, 866, 1003, 1015
BsmFI	GGGAC	3 cut(s)	583, 737, 747
BsnI	GGCC	5 cut(s)	188, 308, 359, 713, 770
BsoBI	CYCGRG	1 cut(s)	901
Bsp1286I	GDGCHC	2 cut(s)	178, 939
Bsp143I	GATC	2 cut(s)	258, 467
BspACI	CCGC	2 cut(s)	185, 601
BspANI	GGCC	5 cut(s)	188, 308, 359, 713, 770
BspCNI	CTCAG	3 cut(s)	119, 720, 1042
BspFNI	CGCG	1 cut(s)	601
BspLI	GGNNCC	3 cut(s)	268, 725, 799
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	266, 797
BsrDI	GCAATG	2 cut(s)	505, 909
BsrI	ACTGG	6 cut(s)	167, 268, 880, 925, 1076, 1125
BssECI	CCNNGG	6 cut(s)	48, 372, 718, 801, 901, 987
BssMI	GATC	2 cut(s)	258, 467
BssT1I	CCWWGG	5 cut(s)	48, 372, 718, 801, 987
Bst4CI	ACNGT	2 cut(s)	782, 1113
Bst6I	CTCTTC	2 cut(s)	12, 1002
BstAPI	GCANNNNNTGC	1 cut(s)	825
BstC8I	GCNNGC	2 cut(s)	340, 1144
BstDEI	CTNAG	5 cut(s)	106, 143, 560, 728, 1029
BstENI	CCTNNNNNAGG	1 cut(s)	949
BstF5I	GGATG	2 cut(s)	194, 390
BstFNI	CGCG	1 cut(s)	601
BstH2I	RGCGCY	1 cut(s)	862
BstHHI	GCGC	2 cut(s)	601, 861
BstKTI	GATC	2 cut(s)	261, 470
BstMAI	GTCTC	5 cut(s)	103, 780, 866, 1003, 1015
BstMBI	GATC	2 cut(s)	258, 467
BstNSI	RCATGY	3 cut(s)	329, 342, 835
BstSCI	CCNGG	2 cut(s)	900, 901
BstUI	CGCG	1 cut(s)	601
BstV1I	GCAGC	5 cut(s)	134, 355, 389, 490, 893
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
Bsu36I	CCTNAGG	1 cut(s)	728
BsuRI	GGCC	5 cut(s)	188, 308, 359, 713, 770
BtsCI	GGATG	2 cut(s)	194, 390
BtsI	GCAGTG	2 cut(s)	256, 540
BtsIMutI	CAGTG	6 cut(s)	174, 256, 261, 540, 1132, 1168
Cac8I	GCNNGC	2 cut(s)	340, 1144
CfoI	GCGC	2 cut(s)	601, 861
Cfr13I	GGNCC	1 cut(s)	724
Cfr9I	CCCGGG	1 cut(s)	901
Csp6I	GTAC	2 cut(s)	701, 979
CviAII	CATG	6 cut(s)	326, 339, 409, 772, 832, 866
CviQI	GTAC	2 cut(s)	701, 979
DdeI	CTNAG	5 cut(s)	106, 143, 560, 728, 1029
DpnI	GATC	2 cut(s)	260, 469
DpnII	GATC	2 cut(s)	258, 467
DrdI	GACNNNNNNGTC	1 cut(s)	821
DseDI	GACNNNNNNGTC	1 cut(s)	821
EaeI	YGGCCR	3 cut(s)	186, 306, 768
Eam1104I	CTCTTC	2 cut(s)	12, 1002
EarI	CTCTTC	2 cut(s)	12, 1002
Eco130I	CCWWGG	5 cut(s)	48, 372, 718, 801, 987
Eco24I	GRGCYC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	724
Eco57I	CTGAAG	2 cut(s)	445, 1137
Eco81I	CCTNAGG	1 cut(s)	728
Eco88I	CYCGRG	1 cut(s)	901
EcoNI	CCTNNNNNAGG	1 cut(s)	949
EcoO109I	RGGNCCY	1 cut(s)	724
EcoT14I	CCWWGG	5 cut(s)	48, 372, 718, 801, 987
EcoT22I	ATGCAT	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	5 cut(s)	48, 372, 718, 801, 987
FaeI	CATG	6 cut(s)	329, 342, 412, 775, 835, 869
FaiI	YATR	9 cut(s)	327, 335, 340, 410, 773, 808, 833, 867, 996
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FaqI	GGGAC	3 cut(s)	583, 737, 747
FatI	CATG	6 cut(s)	325, 338, 408, 771, 831, 865
FbaI	TGATCA	1 cut(s)	258
FblI	GTMKAC	1 cut(s)	1068
Fnu4HI	GCNGC	7 cut(s)	15, 148, 186, 369, 378, 504, 907
FokI	GGATG	2 cut(s)	181, 397
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	7 cut(s)	15, 148, 186, 369, 378, 504, 907
FspBI	CTAG	3 cut(s)	287, 416, 431
GlaI	GCGC	2 cut(s)	600, 860
GluI	GCNGC	7 cut(s)	15, 148, 186, 369, 378, 504, 907
GsaI	CCCAGC	2 cut(s)	203, 384
GsuI	CTGGAG	1 cut(s)	1093
HaeII	RGCGCY	1 cut(s)	862
HaeIII	GGCC	5 cut(s)	188, 308, 359, 713, 770
HapII	CCGG	2 cut(s)	315, 902
HhaI	GCGC	2 cut(s)	601, 861
Hin1II	CATG	6 cut(s)	329, 342, 412, 775, 835, 869
Hin6I	GCGC	2 cut(s)	599, 859
HinP1I	GCGC	2 cut(s)	599, 859
HincII	GTYRAC	1 cut(s)	760
HindII	GTYRAC	1 cut(s)	760
HindIII	AAGCTT	2 cut(s)	1048, 1169
HinfI	GANTC	4 cut(s)	80, 96, 1010, 1065
HpaII	CCGG	2 cut(s)	315, 902
HphI	GGTGA	1 cut(s)	976
Hpy166II	GTNNAC	3 cut(s)	216, 760, 1069
Hpy188I	TCNGA	7 cut(s)	109, 223, 464, 472, 631, 1003, 1117
Hpy188III	TCNNGA	5 cut(s)	276, 416, 431, 1014, 1062
Hpy8I	GTNNAC	3 cut(s)	216, 760, 1069
HpyAV	CCTTC	2 cut(s)	602, 648
HpyCH4III	ACNGT	2 cut(s)	782, 1113
HpyF3I	CTNAG	5 cut(s)	106, 143, 560, 728, 1029
Hsp92II	CATG	6 cut(s)	329, 342, 412, 775, 835, 869
HspAI	GCGC	2 cut(s)	599, 859
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	258, 467
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	3 cut(s)	49, 934, 1074
Lsp1109I	GCAGC	5 cut(s)	134, 355, 389, 490, 893
LweI	GCATC	4 cut(s)	203, 375, 421, 1120
MaeI	CTAG	3 cut(s)	287, 416, 431
MalI	GATC	2 cut(s)	260, 469
MboI	GATC	2 cut(s)	258, 467
MboII	GAAGA	6 cut(s)	241, 244, 477, 1016, 1019, 1130
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	2 cut(s)	178, 939
MluCI	AATT	3 cut(s)	330, 446, 666
MlyI	GAGTC	3 cut(s)	105, 1019, 1074
Mph1103I	ATGCAT	1 cut(s)	414
MseI	TTAA	2 cut(s)	239, 1186
MslI	CAYNNNNRTG	1 cut(s)	407
MspA1I	CMGCKG	2 cut(s)	185, 380
MspI	CCGG	2 cut(s)	315, 902
MspR9I	CCNGG	2 cut(s)	902, 903
MvnI	CGCG	1 cut(s)	601
NciI	CCSGG	2 cut(s)	902, 903
NdeII	GATC	2 cut(s)	258, 467
NlaIII	CATG	6 cut(s)	329, 342, 412, 775, 835, 869
NlaIV	GGNNCC	3 cut(s)	268, 725, 799
NmeAIII	GCCGAG	1 cut(s)	746
NsiI	ATGCAT	1 cut(s)	414
NspI	RCATGY	3 cut(s)	329, 342, 835
PaeI	GCATGC	1 cut(s)	342
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	80
PflFI	GACNNNGTC	2 cut(s)	282, 1057
PkrI	GCNGC	7 cut(s)	16, 149, 187, 370, 379, 505, 908
PleI	GAGTC	3 cut(s)	104, 1018, 1073
PpsI	GAGTC	3 cut(s)	104, 1018, 1073
PpuMI	RGGWCCY	1 cut(s)	724
Psp5II	RGGWCCY	1 cut(s)	724
PspFI	CCCAGC	2 cut(s)	199, 380
PspN4I	GGNNCC	3 cut(s)	268, 725, 799
PspPI	GGNCC	1 cut(s)	724
PspPPI	RGGWCCY	1 cut(s)	724
PsuI	RGATCY	1 cut(s)	467
PsyI	GACNNNGTC	2 cut(s)	282, 1057
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	2 cut(s)	702, 980
RsaNI	GTAC	2 cut(s)	701, 979
RseI	CAYNNNNRTG	1 cut(s)	407
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	239, 1186
SatI	GCNGC	7 cut(s)	15, 148, 186, 369, 378, 504, 907
Sau3AI	GATC	2 cut(s)	258, 467
Sau96I	GGNCC	1 cut(s)	724
SchI	GAGTC	3 cut(s)	105, 1019, 1074
ScrFI	CCNGG	2 cut(s)	902, 903
SduI	GDGCHC	2 cut(s)	178, 939
SfaNI	GCATC	4 cut(s)	203, 375, 421, 1120
SinI	GGWCC	1 cut(s)	724
SmaI	CCCGGG	1 cut(s)	903
SmiMI	CAYNNNNRTG	1 cut(s)	407
SmlI	CTYRAG	2 cut(s)	116, 353
SmoI	CTYRAG	2 cut(s)	116, 353
SphI	GCATGC	1 cut(s)	342
Sse9I	AATT	3 cut(s)	330, 446, 666
SsiI	CCGC	2 cut(s)	185, 601
SspMI	CTAG	3 cut(s)	287, 416, 431
StyD4I	CCNGG	2 cut(s)	900, 901
StyI	CCWWGG	5 cut(s)	48, 372, 718, 801, 987
TaaI	ACNGT	2 cut(s)	782, 1113
TasI	AATT	3 cut(s)	330, 446, 666
TatI	WGTACW	1 cut(s)	978
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	2 cut(s)	239, 1186
Tru9I	TTAA	2 cut(s)	239, 1186
TscAI	CASTG	6 cut(s)	174, 256, 268, 547, 1132, 1168
TseI	GCWGC	6 cut(s)	14, 147, 368, 377, 503, 906
TspDTI	ATGAA	1 cut(s)	1086
TspMI	CCCGGG	1 cut(s)	901
TspRI	CASTG	6 cut(s)	174, 256, 268, 547, 1132, 1168
Tth111I	GACNNNGTC	2 cut(s)	282, 1057
VpaK11BI	GGWCC	1 cut(s)	724
XagI	CCTNNNNNAGG	1 cut(s)	949
XbaI	TCTAGA	2 cut(s)	415, 430
XceI	RCATGY	3 cut(s)	329, 342, 835
XcmI	CCANNNNNNNNNTGG	1 cut(s)	872
XmaI	CCCGGG	1 cut(s)	901
XmiI	GTMKAC	1 cut(s)	1068
XspI	CTAG	3 cut(s)	287, 416, 431
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.