MD11G1241700.v1.1

Protochlorophyllide reductase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
35190727 .. 35193123
2397 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1241700.v1.1.491

Sequence Viewer

Length: 1188 bp
ATGGCTCTTCAGGCTGCTTCTGTGGTTTCTTCTGCATTTTCCGTTCTTAAAGAGGGAAAGACAAGTGCTTCTTTCAAGGATTCAAGTCTGTTTGGAGTCTCTTTCTCGGACAATCTCAAGGCTGAGTTCAGTTCTGTTGCATTAAGCTGCAAGAGGGAATTCAAGCCAGTGAGAGCCCAGACAACAGCAACAGCAAGCCCAGCAATTAACAGGGGAACATCAGAGGGAAGGAAAACTCTAAGAAAGGGCAGTGTGATTGTCACCGGCGCCTCTTCCGGACTCGGTCTAGCCACAGCCAAGTCTTTGGCCGAATCTGGAAAATGGCATGTAATTATGGCCTGCAGGGATTTCCTCAAGACTGAAAGAGCTGCCAAGTCAGCTGGCATGCCCAAAGAAAACTACACCATTATGCATCTAGACCTCGCTTCCCTCGACAGTGTGCGCCAATTTGTCGATAACTTCAGGCGATCTGAGAGGCCGCTTGATGTGCTTGTGTGTAATGCTGCTGTTTATCAGCCAACTGCTAAGGAACCCTCATTCACTGCTGAGGGATTCGAACTCAGTGTTGGGACTAACCATCTCGGACACTTCCTTCTTTCGCGGTTGCTGATGGAAGATTTGAACAAATCCGACTTCCCATCAAGGAGACTCATCATTGTTGGCTCAATTACCGGGAACACGAATACCTTAGCCGGAAATGTACCTCCAAAGGCCAACCTTGGGGACTTGAGGGGACTTGCAGGAGGCTTAAACGGTCTAAACAGCTCGGCCATGATCGATGGTGGAGACTTTGACGGTGCCAAGGCCTACAAGGACAGCAAAGTCTGCAACATGCTCACAATGCAAGAGTTCCACAGGCGCTACCATGAGGAAACCGGGATAACATTTACTTCCCTTTACCCCGGCTGCATTGCCACCACTGGTTTGTTCAGGGAGCACATTCCCTTGTTCAGGCTTCTGTTCCCTCCATTCCAAAAGTACATCACCAAGGGCTACGTCTCAGAAGAAGAAGCCGGAAAGAGACTTGCTCAGGTTGTGAGCGACCCAAGCTTGACAAAGTCGGGAGTCTACTGGAGCTGGAACAAGGATTCGGCTTCCTTCGAGAACCAACTGTCCCAAGAAGCTAGTGATGCGGAGAAGGCTCGCAAGGTGTGGGAGGTCAGTGAGAAGCTTGTGGGTTTGGCCTGA

Protein Analysis

396

Amino Acids

42.91

Weight (kDa)

9.03

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KR PF08659 83 - 175 6.3e-08 KR domain
adh_short PF00106 85 - 227 1.4e-18 short chain dehydrogenase
adh_short_C2 PF13561 89 - 224 1.6e-10 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 821
AccB1I GGYRCC 2 cut(s) 266, 797
AccI GTMKAC 1 cut(s) 1068
AccII CGCG 1 cut(s) 601
AccIII TCCGGA 1 cut(s) 275
AciI CCGC 3 cut(s) 479, 601, 1133
AcoI YGGCCR 2 cut(s) 306, 768
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 445
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 2 cut(s) 702, 980
AfiI CCNNNNNNNGG 2 cut(s) 720, 951
AgsI TTSAA 4 cut(s) 76, 84, 163, 622
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
AloI GAACNNNNNNTCC 2 cut(s) 1097, 1129
AluBI AGCT 8 cut(s) 147, 368, 380, 765, 1050, 1077, 1124, 1171
AluI AGCT 8 cut(s) 147, 368, 380, 765, 1050, 1077, 1124, 1171
Alw21I GWGCWC 1 cut(s) 939
Alw26I GTCTC 5 cut(s) 103, 640, 780, 1003, 1015
Aor13HI TCCGGA 1 cut(s) 275
AoxI GGCC 7 cut(s) 306, 336, 476, 711, 768, 804, 1182
ApeKI GCWGC 5 cut(s) 14, 147, 368, 503, 906
ApoI RAATTY 1 cut(s) 158
AspLEI GCGC 3 cut(s) 269, 444, 861
AsuC2I CCSGG 3 cut(s) 673, 877, 903
AsuHPI GGTGA 2 cut(s) 253, 976
AsuII TTCGAA 1 cut(s) 555
BanI GGYRCC 2 cut(s) 266, 797
BanII GRGCYC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 939
BbvCI CCTCAGC 1 cut(s) 546
BbvI GCAGC 4 cut(s) 134, 355, 490, 893
BccI CCATC 4 cut(s) 585, 604, 646, 773
BcnI CCSGG 3 cut(s) 673, 877, 903
BcoDI GTCTC 5 cut(s) 103, 640, 780, 1003, 1015
BfaI CTAG 3 cut(s) 287, 416, 1125
BfmI CTRYAG 1 cut(s) 340
BfoI RGCGCY 2 cut(s) 270, 862
BisI GCNGC 6 cut(s) 15, 148, 369, 479, 504, 907
BlsI GCNGC 6 cut(s) 16, 149, 370, 480, 505, 908
Bme1390I CCNGG 3 cut(s) 673, 877, 903
BmiI GGNNCC 3 cut(s) 268, 531, 799
BmrFI CCNGG 3 cut(s) 673, 877, 903
BmsI GCATC 2 cut(s) 421, 1120
BplI GAGNNNNNCTC 2 cut(s) 1012, 1044
BpmI CTGGAG 1 cut(s) 1093
Bpu10I CCTNAGC 4 cut(s) 525, 546, 688, 1029
Bpu14I TTCGAA 1 cut(s) 555
BpuEI CTTGAG 3 cut(s) 101, 338, 748
BpuMI CCSGG 3 cut(s) 673, 877, 903
Bsa29I ATCGAT 1 cut(s) 777
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 4 cut(s) 718, 801, 901, 987
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 2 cut(s) 720, 951
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 3 cut(s) 167, 925, 1076
Bse3DI GCAATG 1 cut(s) 909
BseAI TCCGGA 1 cut(s) 275
BseCI ATCGAT 1 cut(s) 777
BseDI CCNNGG 4 cut(s) 718, 801, 901, 987
BseLI CCNNNNNNNGG 2 cut(s) 720, 951
BseMI GCAATG 1 cut(s) 909
BseMII CTCAG 6 cut(s) 114, 462, 537, 574, 1014, 1043
BseNI ACTGG 3 cut(s) 167, 925, 1076
BseXI GCAGC 4 cut(s) 134, 355, 490, 893
BseYI CCCAGC 1 cut(s) 199
Bsh1236I CGCG 1 cut(s) 601
BshFI GGCC 7 cut(s) 308, 338, 478, 713, 770, 806, 1184
BshNI GGYRCC 2 cut(s) 266, 797
BshVI ATCGAT 1 cut(s) 777
BsiHKAI GWGCWC 1 cut(s) 939
BsiSI CCGG 7 cut(s) 264, 276, 672, 693, 876, 903, 1014
BslFI GGGAC 4 cut(s) 583, 737, 747, 1099
BslI CCNNNNNNNGG 2 cut(s) 720, 951
BsmAI GTCTC 5 cut(s) 103, 640, 780, 1003, 1015
BsmBI CGTCTC 1 cut(s) 1003
BsmFI GGGAC 4 cut(s) 583, 737, 747, 1099
BsnI GGCC 7 cut(s) 308, 338, 478, 713, 770, 806, 1184
Bsp119I TTCGAA 1 cut(s) 555
Bsp1286I GDGCHC 2 cut(s) 178, 939
Bsp13I TCCGGA 1 cut(s) 275
Bsp143I GATC 2 cut(s) 467, 774
BspACI CCGC 3 cut(s) 479, 601, 1133
BspANI GGCC 7 cut(s) 308, 338, 478, 713, 770, 806, 1184
BspCNI CTCAG 6 cut(s) 115, 463, 538, 573, 1013, 1042
BspDI ATCGAT 1 cut(s) 777
BspEI TCCGGA 1 cut(s) 275
BspFNI CGCG 1 cut(s) 601
BspLI GGNNCC 3 cut(s) 268, 531, 799
BspMAI CTGCAG 1 cut(s) 344
BspQI GCTCTTC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 555
BspT107I GGYRCC 2 cut(s) 266, 797
BsrDI GCAATG 1 cut(s) 909
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 3 cut(s) 167, 925, 1076
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 4 cut(s) 718, 801, 901, 987
BssMI GATC 2 cut(s) 467, 774
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 3 cut(s) 718, 801, 987
Bst4CI ACNGT 4 cut(s) 437, 755, 797, 1113
Bst6I CTCTTC 2 cut(s) 12, 277
BstACI GRCGYC 1 cut(s) 267
BstAPI GCANNNNNTGC 1 cut(s) 825
BstBI TTCGAA 1 cut(s) 555
BstC8I GCNNGC 5 cut(s) 196, 340, 382, 386, 1144
BstDEI CTNAG 9 cut(s) 123, 239, 471, 525, 546, 560, 688, 1000, 1029
BstENI CCTNNNNNAGG 1 cut(s) 949
BstFNI CGCG 1 cut(s) 601
BstH2I RGCGCY 2 cut(s) 270, 862
BstHHI GCGC 3 cut(s) 269, 444, 861
BstKTI GATC 2 cut(s) 470, 777
BstMAI GTCTC 5 cut(s) 103, 640, 780, 1003, 1015
BstMBI GATC 2 cut(s) 467, 774
BstMWI GCNNNNNNNGC 9 cut(s) 11, 200, 377, 487, 825, 841, 1047, 1130, 1139
BstNSI RCATGY 3 cut(s) 329, 388, 835
BstSCI CCNGG 3 cut(s) 671, 875, 901
BstSFI CTRYAG 1 cut(s) 340
BstUI CGCG 1 cut(s) 601
BstV1I GCAGC 4 cut(s) 134, 355, 490, 893
BstXI CCANNNNNNTGG 1 cut(s) 304
Bsu15I ATCGAT 1 cut(s) 777
BsuRI GGCC 7 cut(s) 308, 338, 478, 713, 770, 806, 1184
BsuTUI ATCGAT 1 cut(s) 777
BtsI GCAGTG 2 cut(s) 256, 540
BtsIMutI CAGTG 7 cut(s) 174, 256, 442, 540, 568, 918, 1168
Cac8I GCNNGC 5 cut(s) 196, 340, 382, 386, 1144
CfoI GCGC 3 cut(s) 269, 444, 861
Cfr10I RCCGGY 1 cut(s) 263
ClaI ATCGAT 1 cut(s) 777
Csp6I GTAC 2 cut(s) 701, 979
CviAII CATG 5 cut(s) 326, 385, 772, 832, 866
CviQI GTAC 2 cut(s) 701, 979
DdeI CTNAG 9 cut(s) 123, 239, 471, 525, 546, 560, 688, 1000, 1029
DinI GGCGCC 1 cut(s) 268
DpnI GATC 2 cut(s) 469, 776
DpnII GATC 2 cut(s) 467, 774
DrdI GACNNNNNNGTC 1 cut(s) 821
DseDI GACNNNNNNGTC 1 cut(s) 821
EaeI YGGCCR 2 cut(s) 306, 768
Eam1104I CTCTTC 2 cut(s) 12, 277
EarI CTCTTC 2 cut(s) 12, 277
Eco130I CCWWGG 3 cut(s) 718, 801, 987
Eco147I AGGCCT 1 cut(s) 806
Eco24I GRGCYC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 445
EcoNI CCTNNNNNAGG 1 cut(s) 949
EcoRI GAATTC 1 cut(s) 158
EcoT14I CCWWGG 3 cut(s) 718, 801, 987
EcoT22I ATGCAT 1 cut(s) 414
EcoT38I GRGCYC 1 cut(s) 178
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
ErhI CCWWGG 3 cut(s) 718, 801, 987
Esp3I CGTCTC 1 cut(s) 1003
FaeI CATG 5 cut(s) 329, 388, 775, 835, 869
FaiI YATR 7 cut(s) 327, 335, 386, 410, 773, 833, 867
FalI AAGNNNNNCTT 2 cut(s) 55, 87
FaqI GGGAC 4 cut(s) 583, 737, 747, 1099
FatI CATG 5 cut(s) 325, 384, 771, 831, 865
FblI GTMKAC 1 cut(s) 1068
Fnu4HI GCNGC 6 cut(s) 15, 148, 369, 479, 504, 907
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 6 cut(s) 15, 148, 369, 479, 504, 907
FspBI CTAG 3 cut(s) 287, 416, 1125
GlaI GCGC 3 cut(s) 268, 443, 860
GluI GCNGC 6 cut(s) 15, 148, 369, 479, 504, 907
GsaI CCCAGC 1 cut(s) 203
GsuI CTGGAG 1 cut(s) 1093
HaeII RGCGCY 2 cut(s) 270, 862
HaeIII GGCC 7 cut(s) 308, 338, 478, 713, 770, 806, 1184
HapII CCGG 7 cut(s) 264, 276, 672, 693, 876, 903, 1014
HhaI GCGC 3 cut(s) 269, 444, 861
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 5 cut(s) 329, 388, 775, 835, 869
Hin6I GCGC 3 cut(s) 267, 442, 859
HinP1I GCGC 3 cut(s) 267, 442, 859
HindIII AAGCTT 2 cut(s) 1048, 1169
HinfI GANTC 8 cut(s) 80, 96, 279, 311, 552, 648, 1065, 1088
HpaII CCGG 7 cut(s) 264, 276, 672, 693, 876, 903, 1014
HphI GGTGA 2 cut(s) 253, 976
Hpy166II GTNNAC 1 cut(s) 1069
Hpy188I TCNGA 6 cut(s) 109, 223, 472, 584, 631, 1003
Hpy188III TCNNGA 6 cut(s) 276, 315, 355, 416, 1062, 1102
Hpy8I GTNNAC 1 cut(s) 1069
HpyAV CCTTC 4 cut(s) 222, 602, 1108, 1132
HpyCH4III ACNGT 4 cut(s) 437, 755, 797, 1113
HpyCH4IV ACGT 1 cut(s) 996
HpyCH4V TGCA 9 cut(s) 35, 140, 150, 342, 412, 740, 828, 844, 909
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 200, 377, 487, 825, 841, 1047, 1130, 1139
HpyF3I CTNAG 9 cut(s) 123, 239, 471, 525, 546, 560, 688, 1000, 1029
HpySE526I ACGT 1 cut(s) 996
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 5 cut(s) 329, 388, 775, 835, 869
HspAI GCGC 3 cut(s) 267, 442, 859
KasI GGCGCC 1 cut(s) 266
Kpn2I TCCGGA 1 cut(s) 275
Kzo9I GATC 2 cut(s) 467, 774
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 934, 1074
Lsp1109I GCAGC 4 cut(s) 134, 355, 490, 893
LweI GCATC 2 cut(s) 421, 1120
MaeI CTAG 3 cut(s) 287, 416, 1125
MaeII ACGT 1 cut(s) 996
MaeIII GTNAC 1 cut(s) 259
MalI GATC 2 cut(s) 469, 776
MboI GATC 2 cut(s) 467, 774
MboII GAAGA 5 cut(s) 21, 264, 626, 1016, 1019
MhlI GDGCHC 2 cut(s) 178, 939
MluCI AATT 5 cut(s) 158, 204, 330, 446, 666
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 4 cut(s) 105, 273, 642, 1074
MmeI TCCRAC 1 cut(s) 654
Mph1103I ATGCAT 1 cut(s) 414
MroI TCCGGA 1 cut(s) 275
MseI TTAA 4 cut(s) 48, 143, 207, 749
MslI CAYNNNNRTG 1 cut(s) 407
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 7 cut(s) 264, 276, 672, 693, 876, 903, 1014
MspR9I CCNGG 3 cut(s) 673, 877, 903
MvnI CGCG 1 cut(s) 601
MwoI GCNNNNNNNGC 9 cut(s) 11, 200, 377, 487, 825, 841, 1047, 1130, 1139
NarI GGCGCC 1 cut(s) 267
NciI CCSGG 3 cut(s) 673, 877, 903
NdeII GATC 2 cut(s) 467, 774
NlaIII CATG 5 cut(s) 329, 388, 775, 835, 869
NlaIV GGNNCC 3 cut(s) 268, 531, 799
NmeAIII GCCGAG 1 cut(s) 746
NmuCI GTSAC 1 cut(s) 259
NsiI ATGCAT 1 cut(s) 414
NspI RCATGY 3 cut(s) 329, 388, 835
NspV TTCGAA 1 cut(s) 555
PaeI GCATGC 1 cut(s) 388
PceI AGGCCT 1 cut(s) 806
PciSI GCTCTTC 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PfeI GAWTC 4 cut(s) 80, 311, 552, 1088
PflFI GACNNNGTC 2 cut(s) 282, 1057
PkrI GCNGC 6 cut(s) 16, 149, 370, 480, 505, 908
PleI GAGTC 4 cut(s) 104, 273, 642, 1073
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 4 cut(s) 104, 273, 642, 1073
PspFI CCCAGC 1 cut(s) 199
PspN4I GGNNCC 3 cut(s) 268, 531, 799
PstI CTGCAG 1 cut(s) 344
PsyI GACNNNGTC 2 cut(s) 282, 1057
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 2 cut(s) 702, 980
RsaNI GTAC 2 cut(s) 701, 979
RseI CAYNNNNRTG 1 cut(s) 407
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 4 cut(s) 48, 143, 207, 749
SatI GCNGC 6 cut(s) 15, 148, 369, 479, 504, 907
Sau3AI GATC 2 cut(s) 467, 774
SbfI CCTGCAGG 1 cut(s) 344
SchI GAGTC 4 cut(s) 105, 273, 642, 1074
ScrFI CCNGG 3 cut(s) 673, 877, 903
SdaI CCTGCAGG 1 cut(s) 344
SduI GDGCHC 2 cut(s) 178, 939
SfaNI GCATC 2 cut(s) 421, 1120
SfcI CTRYAG 1 cut(s) 340
SfoI GGCGCC 1 cut(s) 268
SfuI TTCGAA 1 cut(s) 555
SgrAI CRCCGGYG 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 407
SmlI CTYRAG 3 cut(s) 116, 353, 727
SmoI CTYRAG 3 cut(s) 116, 353, 727
SphI GCATGC 1 cut(s) 388
Sse8387I CCTGCAGG 1 cut(s) 344
Sse9I AATT 5 cut(s) 158, 204, 330, 446, 666
SseBI AGGCCT 1 cut(s) 806
SsiI CCGC 3 cut(s) 479, 601, 1133
SspDI GGCGCC 1 cut(s) 266
SspMI CTAG 3 cut(s) 287, 416, 1125
StuI AGGCCT 1 cut(s) 806
StyD4I CCNGG 3 cut(s) 671, 875, 901
StyI CCWWGG 3 cut(s) 718, 801, 987
TaaI ACNGT 4 cut(s) 437, 755, 797, 1113
TaiI ACGT 1 cut(s) 999
TaqI TCGA 5 cut(s) 432, 453, 555, 777, 1101
TaqII GACCGA 1 cut(s) 272
TasI AATT 5 cut(s) 158, 204, 330, 446, 666
TatI WGTACW 1 cut(s) 978
TauI GCSGC 1 cut(s) 481
TfiI GAWTC 4 cut(s) 80, 311, 552, 1088
Tru1I TTAA 4 cut(s) 48, 143, 207, 749
Tru9I TTAA 4 cut(s) 48, 143, 207, 749
TscAI CASTG 7 cut(s) 174, 256, 442, 547, 568, 925, 1168
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 5 cut(s) 14, 147, 368, 503, 906
Tsp45I GTSAC 1 cut(s) 259
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 7 cut(s) 174, 256, 442, 547, 568, 925, 1168
Tth111I GACNNNGTC 2 cut(s) 282, 1057
XagI CCTNNNNNAGG 1 cut(s) 949
XapI RAATTY 1 cut(s) 158
XbaI TCTAGA 1 cut(s) 415
XceI RCATGY 3 cut(s) 329, 388, 835
XmiI GTMKAC 1 cut(s) 1068
XspI CTAG 3 cut(s) 287, 416, 1125
Zsp2I ATGCAT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.