Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009401

Physical Location & Seq

Genomic Coordinates Reverse (-)

13639816 .. 13641902

Gene Structure 2087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g20600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCTCTTCGTGCTGCTTCTGTGGTTTCCTCTGCTTTCTCTGCTCCCAAGGAGGGAAAGCCGTGTGCTTCTTTCAAGGATTCAACCCTGTTTGGAGTCTCATTCTCTGAAAATCTCAAGGCTGATTTCAGCTCTGTTGCACTAAGCTGCAAGAGAGAGTTCAAGCCAGTGAGGGCTCAAACAGCAGCCACAGCATCCCCAGCAATCAACAAGTCCACTTCAGATGGGAAGAAGACTCTGAGAAAAGGCAGTGTAGTGATCACTGGTGCCTCCTCTGGACTTGGTCTAGCCACAGCCAAGGCATTGGCCGAAACCGGGAAATGGCATGTGATTATGGCATGCAGGGATTTCCTTAAGGCTGAAAGAGCTGCCAAGGCAGCTGGGATGCCGAAAGAGAACTACACTATCATGCATCTAGACCTTGCTTCTCTAGACAGCGTTCGGCAATTTGTTGACAACTTCAGAAGATCGGAACGCCCCCTTGATGTTCTGGTCTGCAATGCTGCTGTGTATTTACCGACTGCTAAGGAGCCTACTTACACTGCTGATGGATTTGAACTTAGTGTTGGAACTAACCATCTTGGACATTTCCTTCTTGCGCGGTTGATGCTTGAGGATTTGAACAAATCCGATTACCCTTCAAAGAGACTCATCATTGTTGGCTCAATTACAGGGAACACAAACACTTTGGCTGGAAATGTACCTCCAAAGGCCAACCTTGGGGATTTGAGGGGACTTGCAGGGGGTGTAAATGGGGTCAACAGCTCGGCCATGATTGATGGTGGAGACTTTGACGGTGCCAAGGCTTACAAGGACAGCAAAGTCTGCAACATGCTCACAATGCAAGAGTTCCACAGGCGCTATCACGAGGAGACTGGGATCACATTCGCTTCCCTTTACCCCGGTTGCATTGCCACAACTGGCTTGTTCAGGGAGCACATTCCCTTGTTCAGGCTCCTGTTCCCTCCATTCCAGAAGTACATCACCAAGGGTTATGTCTCTGAAGAAGAATCCGGAAAGAGACTTGCTCAGGTTGTAAGCGACCCAAGCTTGACAAAGTCAGGAGTCTACTGGAGCTGGAACAAGACCTCTGCTTCATTTGAGAACCAACTGTCTGAAGAAGCCAGTGATGCAGACAAGGCTCGCAAGCTGTGGGAAGTCAGTGAGAAGCTTGTCGGTTTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009527 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009642 GO:0009646 GO:0009647 GO:0009707 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009941 GO:0010033 GO:0016020 GO:0016491 GO:0016627 GO:0016628 GO:0016630 GO:0019867 GO:0019904 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042170 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050896 GO:0055035 GO:0055114 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

adh_short

Protein Analysis

396

Amino Acids

42.72

Weight (kDa)

9.03

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	83 - 171	1.9e-07	KR domain
adh_short	PF00106	85 - 227	3.1e-18	short chain dehydrogenase
adh_short_C2	PF13561	89 - 225	2.9e-11	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03630 AT1G03630 AT4G27440 AT4G27440 AT5G54190 AT5G54190
fragaria_vesca	FvH4_3g20600
malus_domestica	MD11G1241700.v1.1
prunus_persica	Prupe.4G185700_v2.0.a1 Prupe.4G185700_v2.0.a1 Prupe.4G185700_v2.0.a1
pyrus_communis	pycom11g21330
rosa_chinensis	RchiOBHm_Chr5g0034621
rosa_laevigata	RLG00000033559
rosa_multiflora	Rmu_sc0002460.1_g000093
rosa_roxburghii	Rroxscaffold_1G00045700
rosa_rugosa	Rorug05G0147200
rosa_samantha	Rh5AG239200 Rh5BG239900 Rh5CG270300 Rh5DG248100
rosa_wichuraiana	Rw5G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	821
AccB1I	GGYRCC	2 cut(s)	266, 797
AccI	GTMKAC	1 cut(s)	1068
AccII	CGCG	1 cut(s)	601
AccIII	TCCGGA	1 cut(s)	1013
AciI	CCGC	1 cut(s)	601
AclWI	GGATC	1 cut(s)	887
AcoI	YGGCCR	2 cut(s)	306, 768
AcuI	CTGAAG	4 cut(s)	204, 445, 1023, 1137
AfaI	GTAC	2 cut(s)	702, 980
AfiI	CCNNNNNNNGG	5 cut(s)	53, 315, 321, 720, 951
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	6 cut(s)	76, 84, 163, 557, 622, 642
AjuI	GAANNNNNNNTTGG	2 cut(s)	549, 581
AluBI	AGCT	9 cut(s)	132, 147, 368, 380, 765, 1050, 1077, 1150, 1171
AluI	AGCT	9 cut(s)	132, 147, 368, 380, 765, 1050, 1077, 1150, 1171
Alw21I	GWGCWC	1 cut(s)	939
Alw26I	GTCTC	6 cut(s)	103, 640, 780, 866, 1003, 1015
AlwI	GGATC	1 cut(s)	887
Aor13HI	TCCGGA	1 cut(s)	1013
AoxI	GGCC	3 cut(s)	306, 711, 768
ApeKI	GCWGC	6 cut(s)	14, 147, 185, 368, 377, 503
AspLEI	GCGC	2 cut(s)	601, 861
AsuC2I	CCSGG	2 cut(s)	316, 903
AsuHPI	GGTGA	1 cut(s)	976
BanI	GGYRCC	2 cut(s)	266, 797
BanII	GRGCYC	1 cut(s)	178
BauI	CACGAG	1 cut(s)	866
BbsI	GAAGAC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	939
BbvI	GCAGC	5 cut(s)	134, 197, 355, 389, 490
BccI	CCATC	4 cut(s)	218, 542, 585, 773
BceAI	ACGGC	1 cut(s)	46
BclI	TGATCA	1 cut(s)	258
BcnI	CCSGG	2 cut(s)	316, 903
BcoDI	GTCTC	6 cut(s)	103, 640, 780, 866, 1003, 1015
BfaI	CTAG	3 cut(s)	287, 416, 431
BfoI	RGCGCY	1 cut(s)	862
BfrI	CTTAAG	1 cut(s)	353
BisI	GCNGC	6 cut(s)	15, 148, 186, 369, 378, 504
BlsI	GCNGC	6 cut(s)	16, 149, 187, 370, 379, 505
Bme1390I	CCNGG	2 cut(s)	316, 903
BmiI	GGNNCC	4 cut(s)	268, 531, 799, 956
BmrFI	CCNGG	2 cut(s)	316, 903
BmrI	ACTGGG	1 cut(s)	885
BmsI	GCATC	5 cut(s)	203, 375, 421, 597, 1120
BmuI	ACTGGG	1 cut(s)	885
BpiI	GAAGAC	1 cut(s)	239
BplI	GAGNNNNNCTC	2 cut(s)	1012, 1044
BpmI	CTGGAG	1 cut(s)	1093
Bpu10I	CCTNAGC	2 cut(s)	525, 1029
BpuEI	CTTGAG	2 cut(s)	101, 632
BpuMI	CCSGG	2 cut(s)	316, 903
BsaJI	CCNNGG	7 cut(s)	48, 297, 372, 718, 801, 901, 987
BsaWI	WCCGGW	1 cut(s)	1013
Bsc4I	CCNNNNNNNGG	5 cut(s)	53, 315, 321, 720, 951
Bse1I	ACTGG	6 cut(s)	167, 268, 880, 925, 1076, 1125
Bse3DI	GCAATG	2 cut(s)	505, 909
BseAI	TCCGGA	1 cut(s)	1013
BseDI	CCNNGG	7 cut(s)	48, 297, 372, 718, 801, 901, 987
BseGI	GGATG	2 cut(s)	194, 390
BseLI	CCNNNNNNNGG	5 cut(s)	53, 315, 321, 720, 951
BseMI	GCAATG	2 cut(s)	505, 909
BseMII	CTCAG	2 cut(s)	230, 1043
BseNI	ACTGG	6 cut(s)	167, 268, 880, 925, 1076, 1125
BseRI	GAGGAG	2 cut(s)	262, 884
BseXI	GCAGC	5 cut(s)	134, 197, 355, 389, 490
BseYI	CCCAGC	2 cut(s)	199, 380
Bsh1236I	CGCG	1 cut(s)	601
BshFI	GGCC	3 cut(s)	308, 713, 770
BshNI	GGYRCC	2 cut(s)	266, 797
BsiHKAI	GWGCWC	1 cut(s)	939
BsiSI	CCGG	3 cut(s)	315, 903, 1014
BslFI	GGGAC	1 cut(s)	747
BslI	CCNNNNNNNGG	5 cut(s)	53, 315, 321, 720, 951
BsmAI	GTCTC	6 cut(s)	103, 640, 780, 866, 1003, 1015
BsmFI	GGGAC	1 cut(s)	747
BsnI	GGCC	3 cut(s)	308, 713, 770
Bsp1286I	GDGCHC	2 cut(s)	178, 939
Bsp13I	TCCGGA	1 cut(s)	1013
Bsp143I	GATC	3 cut(s)	258, 467, 879
BspACI	CCGC	1 cut(s)	601
BspANI	GGCC	3 cut(s)	308, 713, 770
BspCNI	CTCAG	2 cut(s)	231, 1042
BspEI	TCCGGA	1 cut(s)	1013
BspFNI	CGCG	1 cut(s)	601
BspLI	GGNNCC	4 cut(s)	268, 531, 799, 956
BspPI	GGATC	1 cut(s)	887
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	266, 797
BspTI	CTTAAG	1 cut(s)	353
BsrDI	GCAATG	2 cut(s)	505, 909
BsrI	ACTGG	6 cut(s)	167, 268, 880, 925, 1076, 1125
BssECI	CCNNGG	7 cut(s)	48, 297, 372, 718, 801, 901, 987
BssMI	GATC	3 cut(s)	258, 467, 879
BssSI	CACGAG	1 cut(s)	866
BssT1I	CCWWGG	6 cut(s)	48, 297, 372, 718, 801, 987
Bst2BI	CACGAG	1 cut(s)	866
Bst4CI	ACNGT	2 cut(s)	797, 1113
Bst6I	CTCTTC	1 cut(s)	12
BstAFI	CTTAAG	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	825
BstC8I	GCNNGC	3 cut(s)	340, 1144, 1148
BstDEI	CTNAG	5 cut(s)	143, 239, 525, 560, 1029
BstENI	CCTNNNNNAGG	1 cut(s)	949
BstF5I	GGATG	2 cut(s)	194, 390
BstFNI	CGCG	1 cut(s)	601
BstH2I	RGCGCY	1 cut(s)	862
BstHHI	GCGC	2 cut(s)	601, 861
BstKTI	GATC	3 cut(s)	261, 470, 882
BstMAI	GTCTC	6 cut(s)	103, 640, 780, 866, 1003, 1015
BstMBI	GATC	3 cut(s)	258, 467, 879
BstNSI	RCATGY	3 cut(s)	329, 342, 835
BstSCI	CCNGG	2 cut(s)	314, 901
BstUI	CGCG	1 cut(s)	601
BstV1I	GCAGC	5 cut(s)	134, 197, 355, 389, 490
BstV2I	GAAGAC	1 cut(s)	239
BstXI	CCANNNNNNTGG	1 cut(s)	304
BsuRI	GGCC	3 cut(s)	308, 713, 770
BtsCI	GGATG	2 cut(s)	194, 390
BtsI	GCAGTG	2 cut(s)	256, 540
BtsIMutI	CAGTG	6 cut(s)	174, 256, 261, 540, 1132, 1168
Cac8I	GCNNGC	3 cut(s)	340, 1144, 1148
CfoI	GCGC	2 cut(s)	601, 861
Csp6I	GTAC	2 cut(s)	701, 979
CviAII	CATG	5 cut(s)	326, 339, 409, 772, 832
CviQI	GTAC	2 cut(s)	701, 979
DdeI	CTNAG	5 cut(s)	143, 239, 525, 560, 1029
DpnI	GATC	3 cut(s)	260, 469, 881
DpnII	GATC	3 cut(s)	258, 467, 879
DrdI	GACNNNNNNGTC	1 cut(s)	821
DseDI	GACNNNNNNGTC	1 cut(s)	821
EaeI	YGGCCR	2 cut(s)	306, 768
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco130I	CCWWGG	6 cut(s)	48, 297, 372, 718, 801, 987
Eco24I	GRGCYC	1 cut(s)	178
Eco57I	CTGAAG	4 cut(s)	204, 445, 1023, 1137
EcoNI	CCTNNNNNAGG	1 cut(s)	949
EcoT14I	CCWWGG	6 cut(s)	48, 297, 372, 718, 801, 987
EcoT22I	ATGCAT	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	6 cut(s)	48, 297, 372, 718, 801, 987
FaeI	CATG	5 cut(s)	329, 342, 412, 775, 835
FaiI	YATR	7 cut(s)	327, 335, 340, 410, 773, 833, 996
FaqI	GGGAC	1 cut(s)	747
FatI	CATG	5 cut(s)	325, 338, 408, 771, 831
FbaI	TGATCA	1 cut(s)	258
FblI	GTMKAC	1 cut(s)	1068
Fnu4HI	GCNGC	6 cut(s)	15, 148, 186, 369, 378, 504
FokI	GGATG	2 cut(s)	181, 397
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	6 cut(s)	15, 148, 186, 369, 378, 504
FspBI	CTAG	3 cut(s)	287, 416, 431
GlaI	GCGC	2 cut(s)	600, 860
GluI	GCNGC	6 cut(s)	15, 148, 186, 369, 378, 504
GsaI	CCCAGC	2 cut(s)	203, 384
GsuI	CTGGAG	1 cut(s)	1093
HaeII	RGCGCY	1 cut(s)	862
HaeIII	GGCC	3 cut(s)	308, 713, 770
HapII	CCGG	3 cut(s)	315, 903, 1014
HhaI	GCGC	2 cut(s)	601, 861
Hin1II	CATG	5 cut(s)	329, 342, 412, 775, 835
Hin6I	GCGC	2 cut(s)	599, 859
HinP1I	GCGC	2 cut(s)	599, 859
HincII	GTYRAC	2 cut(s)	454, 760
HindII	GTYRAC	2 cut(s)	454, 760
HindIII	AAGCTT	2 cut(s)	1048, 1169
HinfI	GANTC	6 cut(s)	80, 96, 235, 648, 1010, 1065
HpaII	CCGG	3 cut(s)	315, 903, 1014
HphI	GGTGA	1 cut(s)	976
Hpy166II	GTNNAC	4 cut(s)	216, 454, 760, 1069
Hpy188I	TCNGA	8 cut(s)	109, 223, 240, 464, 472, 631, 1003, 1117
Hpy188III	TCNNGA	7 cut(s)	276, 416, 431, 866, 973, 1014, 1062
Hpy8I	GTNNAC	4 cut(s)	216, 454, 760, 1069
HpyAV	CCTTC	2 cut(s)	602, 648
HpyCH4III	ACNGT	2 cut(s)	797, 1113
HpyF3I	CTNAG	5 cut(s)	143, 239, 525, 560, 1029
Hsp92II	CATG	5 cut(s)	329, 342, 412, 775, 835
HspAI	GCGC	2 cut(s)	599, 859
Kpn2I	TCCGGA	1 cut(s)	1013
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	3 cut(s)	258, 467, 879
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	5 cut(s)	49, 529, 934, 960, 1074
Lsp1109I	GCAGC	5 cut(s)	134, 197, 355, 389, 490
LweI	GCATC	5 cut(s)	203, 375, 421, 597, 1120
MaeI	CTAG	3 cut(s)	287, 416, 431
MalI	GATC	3 cut(s)	260, 469, 881
MboI	GATC	3 cut(s)	258, 467, 879
MboII	GAAGA	6 cut(s)	241, 244, 477, 1016, 1019, 1130
MhlI	GDGCHC	2 cut(s)	178, 939
MluCI	AATT	2 cut(s)	446, 666
MlyI	GAGTC	4 cut(s)	105, 229, 642, 1074
MmeI	TCCRAC	1 cut(s)	547
Mph1103I	ATGCAT	1 cut(s)	414
MroI	TCCGGA	1 cut(s)	1013
MseI	TTAA	2 cut(s)	354, 1186
MslI	CAYNNNNRTG	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	380
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	3 cut(s)	315, 903, 1014
MspR9I	CCNGG	2 cut(s)	316, 903
MvnI	CGCG	1 cut(s)	601
NciI	CCSGG	2 cut(s)	316, 903
NdeII	GATC	3 cut(s)	258, 467, 879
NlaIII	CATG	5 cut(s)	329, 342, 412, 775, 835
NlaIV	GGNNCC	4 cut(s)	268, 531, 799, 956
NmeAIII	GCCGAG	1 cut(s)	746
NsiI	ATGCAT	1 cut(s)	414
NspI	RCATGY	3 cut(s)	329, 342, 835
PaeI	GCATGC	1 cut(s)	342
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	80, 1010
PflFI	GACNNNGTC	2 cut(s)	282, 1057
PkrI	GCNGC	6 cut(s)	16, 149, 187, 370, 379, 505
PleI	GAGTC	4 cut(s)	104, 229, 642, 1073
PpsI	GAGTC	4 cut(s)	104, 229, 642, 1073
PspFI	CCCAGC	2 cut(s)	199, 380
PspN4I	GGNNCC	4 cut(s)	268, 531, 799, 956
PsyI	GACNNNGTC	2 cut(s)	282, 1057
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	2 cut(s)	702, 980
RsaNI	GTAC	2 cut(s)	701, 979
RseI	CAYNNNNRTG	1 cut(s)	407
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	354, 1186
SatI	GCNGC	6 cut(s)	15, 148, 186, 369, 378, 504
Sau3AI	GATC	3 cut(s)	258, 467, 879
SchI	GAGTC	4 cut(s)	105, 229, 642, 1074
ScrFI	CCNGG	2 cut(s)	316, 903
SduI	GDGCHC	2 cut(s)	178, 939
SfaNI	GCATC	5 cut(s)	203, 375, 421, 597, 1120
SmiMI	CAYNNNNRTG	1 cut(s)	407
SmlI	CTYRAG	3 cut(s)	116, 353, 611
SmoI	CTYRAG	3 cut(s)	116, 353, 611
SphI	GCATGC	1 cut(s)	342
Sse9I	AATT	2 cut(s)	446, 666
SsiI	CCGC	1 cut(s)	601
SspMI	CTAG	3 cut(s)	287, 416, 431
StyD4I	CCNGG	2 cut(s)	314, 901
StyI	CCWWGG	6 cut(s)	48, 297, 372, 718, 801, 987
TaaI	ACNGT	2 cut(s)	797, 1113
TasI	AATT	2 cut(s)	446, 666
TatI	WGTACW	1 cut(s)	978
TfiI	GAWTC	2 cut(s)	80, 1010
Tru1I	TTAA	2 cut(s)	354, 1186
Tru9I	TTAA	2 cut(s)	354, 1186
TscAI	CASTG	6 cut(s)	174, 256, 268, 547, 1132, 1168
TseI	GCWGC	6 cut(s)	14, 147, 185, 368, 377, 503
TspDTI	ATGAA	1 cut(s)	1086
TspRI	CASTG	6 cut(s)	174, 256, 268, 547, 1132, 1168
Tth111I	GACNNNGTC	2 cut(s)	282, 1057
Vha464I	CTTAAG	1 cut(s)	353
XagI	CCTNNNNNAGG	1 cut(s)	949
XbaI	TCTAGA	2 cut(s)	415, 430
XceI	RCATGY	3 cut(s)	329, 342, 835
XmiI	GTMKAC	1 cut(s)	1068
XspI	CTAG	3 cut(s)	287, 416, 431
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.